Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1156600 Malus domestica HOM05D005804 ORTHO05D006849 1.4e-245 852.4 420 100.0
Prupe.5G150700 Prunus persica HOM05D005804 ORTHO05D006849 2.1e-196 689.1 430 80.0
MD06G1141400 Malus domestica HOM05D005804 ORTHO05D006849 4.7e-180 634.8 393 80.7
FAN08G1998 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.8e-164 582.4 415 72.5
FAN13G2030 Fragaria x ananassa HOM05D005804 ORTHO05D006849 4.7e-164 581.6 422 71.6
FvH4_5g08360 Fragaria vesca HOM05D005804 ORTHO05D006849 8.1e-164 580.9 416 72.4
FAN04G2797 Fragaria x ananassa HOM05D005804 ORTHO05D006849 4.9e-161 571.6 420 70.5
FAN18G4115 Fragaria x ananassa HOM05D005804 ORTHO05D006849 2.4e-160 569.3 411 71.8
QL10p002869 Quercus lobata HOM05D005804 ORTHO05D006849 5.4e-152 541.6 424 65.8
Cfa018793 Carpinus fangiana HOM05D005804 ORTHO05D006849 1.1e-144 517.3 440 61.6
Haze_07141 Corylus avellana HOM05D005804 ORTHO05D006849 3.2e-144 515.8 446 61.0
CiPaw.11G006800 Carya illinoinensis HOM05D005804 ORTHO05D006849 7.1e-136 488.0 431 60.1
GSVIVG01008547001 Vitis vinifera HOM05D005804 ORTHO05D006849 2.9e-129 466.1 450 57.6
COL.COLO4_28132 Corchorus olitorius HOM05D005804 ORTHO05D006849 2.1e-127 459.9 425 56.7
Psat5g051400 Pisum sativum HOM05D005804 ORTHO05D006849 4.6e-127 458.8 427 57.1
Lalb_Chr11g0069551 Lupinus albus HOM05D005804 ORTHO05D006849 1.3e-126 457.2 433 57.3
Thecc.03G129500 Theobroma cacao HOM05D005804 ORTHO05D006849 1.8e-126 456.8 434 56.7
Gorai.001G058800 Gossypium raimondii HOM05D005804 ORTHO05D006849 3.9e-126 455.7 426 55.9
Duzib205G0351 Durio zibethinus HOM05D005804 ORTHO05D006849 5.1e-126 455.3 432 55.8
Hma1.2p1_0014F.1_g009390 Hydrangea macrophylla HOM05D005804 ORTHO05D006849 3.3e-125 452.6 429 58.0
TPR.G14211 Trifolium pratense HOM05D005804 ORTHO05D006849 4.8e-124 448.7 427 56.0
Dinv23150 Davidia involucrata HOM05D005804 ORTHO05D006849 8.2e-124 448.0 427 59.5
Cpa.g.sc13.112 Carica papaya HOM05D005804 ORTHO05D006849 2.0e-122 443.4 422 55.9
TAR629G0711 Trochodendron aralioides HOM05D005804 ORTHO05D006849 1.4e-120 437.2 431 58.0
Medtr3g099220 Medicago truncatula HOM05D005804 ORTHO05D006849 1.9e-120 436.8 420 55.5
TWI23G1188 Tripterygium wilfordii HOM05D005804 ORTHO05D006849 2.5e-120 436.4 429 55.5
Medtr2g045240 Medicago truncatula HOM05D005804 ORTHO05D006849 4.6e-119 432.2 416 55.5
Medtr2g045245 Medicago truncatula HOM05D005804 ORTHO05D006849 4.6e-119 432.2 416 55.5
Atru.chr12.1219 Acer truncatum HOM05D005804 ORTHO05D006849 2.3e-118 429.9 434 54.1
Ca_16047_v3 Cicer arietinum L. HOM05D005804 ORTHO05D006849 2.3e-118 429.9 428 54.4
Lj1g0008882 Lotus japonicus HOM05D005804 ORTHO05D006849 1.5e-117 427.2 425 56.7
THA.LOC104825017 Tarenaya hassleriana HOM05D005804 ORTHO05D006849 1.9e-117 426.8 424 52.4
Atru.chr6.1796 Acer truncatum HOM05D005804 ORTHO05D006849 3.7e-116 422.5 421 54.9
CsaV3_1G009670 Cucumis sativus L. HOM05D005804 ORTHO05D006849 6.3e-116 421.8 433 52.2
CANSAT80G2783 Cannabis sativa HOM05D005804 ORTHO05D006849 8.2e-116 421.4 392 56.6
ClCG03G003790 Citrullus lanatus HOM05D005804 ORTHO05D006849 5.3e-115 418.7 446 51.3
Ciclev10031832m.g Citrus clementina HOM05D005804 ORTHO05D006849 5.3e-115 418.7 417 55.6
Rhsim12G0175100 Rhododendron simsii HOM05D005804 ORTHO05D006849 1.7e-113 413.7 464 51.5
TAR371G0929 Trochodendron aralioides HOM05D005804 ORTHO05D006849 8.5e-113 411.4 431 54.8
arahy.Tifrunner.gnm1.ann1.Y2QIS7 Arachis hypogaea HOM05D005804 ORTHO05D006849 1.9e-112 410.2 410 54.6
arahy.Tifrunner.gnm1.ann1.PR501J Arachis hypogaea HOM05D005804 ORTHO05D006849 7.2e-112 408.3 413 53.8
arahy.Tifrunner.gnm1.ann1.489AYV Arachis hypogaea HOM05D005804 ORTHO05D006849 6.7e-110 401.7 426 52.8
arahy.Tifrunner.gnm1.ann1.I073XK Arachis hypogaea HOM05D005804 ORTHO05D006849 3.3e-109 399.4 412 52.9
Aqoxy5G03360 Aquilegia oxysepala HOM05D005804 ORTHO05D006849 5.7e-109 398.7 436 51.4
Cc04_g08810 Coffea canephora HOM05D005804 ORTHO05D006849 6.3e-108 395.2 432 52.3
PSO478G1623 Papaver somniferum HOM05D005804 ORTHO05D006849 3.4e-106 389.4 442 52.9
Peaxi162Scf00171g00421 Petunia axillaris HOM05D005804 ORTHO05D006849 5.9e-106 388.7 429 51.0
Oeu058729.2 Olea europaea HOM05D005804 ORTHO05D006849 1.0e-105 387.9 466 47.9
VMungo1309G0122 Vigna mungo HOM05D005804 ORTHO05D006849 1.7e-105 387.1 419 50.6
DCAR_007491 Daucus carota HOM05D005804 ORTHO05D006849 8.5e-105 384.8 420 52.1
Lj9A479T55 Lonicera japonica HOM05D005804 ORTHO05D006849 2.1e-103 380.2 405 56.3
HanXRQChr13g0408711 Helianthus annuus HOM05D005804 ORTHO05D006849 2.7e-103 379.8 420 50.7
AL7G28300 Arabidopsis lyrata HOM05D005804 ORTHO05D006849 4.7e-103 379.0 425 49.9
Sc22g0003840 Simmondsia chinensis HOM05D005804 ORTHO05D006849 6.1e-103 378.6 433 49.7
AT4G24900 Arabidopsis thaliana HOM05D005804 ORTHO05D006849 7.9e-103 378.3 424 50.0
Lsat_1_v5_gn_1_33221 Lactuca sativa HOM05D005804 ORTHO05D006849 1.4e-102 377.5 419 51.8
Nitab4.5_0010950g0010 Nicotiana tabacum HOM05D005804 ORTHO05D006849 1.8e-102 377.1 425 49.4
MELO3C002363.2 Cucumis melo HOM05D005804 ORTHO05D006849 5.1e-102 375.6 433 49.4
Hund02443 Selenicereus undatus HOM05D005804 ORTHO05D006849 2.6e-101 373.2 423 48.2
Sopen03g029080 Solanum pennellii HOM05D005804 ORTHO05D006849 1.4e-99 367.5 423 47.5
Solyc03g098330.2 Solanum lycopersicum HOM05D005804 ORTHO05D006849 3.1e-99 366.3 411 48.7
MBI11_g05331_MAGBIO Magnolia biondii HOM05D005804 ORTHO05D006849 5.3e-99 365.5 407 51.8
Sp7g22880 Schrenkiella parvula HOM05D005804 ORTHO05D006849 2.2e-97 360.1 420 48.3
RcHm_v2.0_Chr7g0190091 Rosa chinensis HOM05D005804 ORTHO05D006849 3.8e-97 359.4 214 80.8
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 5.0e-97 359.0 423 48.5
PGSC0003DMG400025629 Solanum tuberosum HOM05D005804 ORTHO05D006849 1.4e-96 357.5 421 47.5
SGA_v2.0_scaffold164G38120 Striga asiatica HOM05D005804 ORTHO05D006849 8.0e-95 351.7 453 43.0
Thhalv10025155m.g Eutrema salsugineum HOM05D005804 ORTHO05D006849 5.2e-94 349.0 411 48.9
SalBow8G2935 Salvia bowleyana HOM05D005804 ORTHO05D006849 5.2e-94 349.0 432 47.7
Aa31LG7G10880 Aethionema arabicum HOM05D005804 ORTHO05D006849 1.7e-92 344.0 440 47.0
Glyma.06G170000 Glycine max HOM05D005804 ORTHO05D006849 4.8e-92 342.4 406 49.0
SHI10578 Sapria himalayana HOM05D005804 ORTHO05D006849 3.1e-91 339.7 421 47.5
Migut.O00254 Erythranthe guttata HOM05D005804 ORTHO05D006849 7.0e-91 338.6 430 44.7
Ah.02g114880 Amaranthus hybridus HOM05D005804 ORTHO05D006849 1.7e-89 334.0 419 46.8
BcaNung06008 Brassica carinata HOM05D005804 ORTHO05D006849 1.7e-89 334.0 439 45.3
BraA01t01555Z Brassica rapa HOM05D005804 ORTHO05D006849 5.2e-86 322.4 441 43.1
AUR62029607 Chenopodium quinoa HOM05D005804 ORTHO05D006849 8.8e-86 321.6 406 46.6
A01p16190 Brassica napus HOM05D005804 ORTHO05D006849 2.6e-85 320.1 441 42.9
HPP92_013611 Vanilla planifolia HOM05D005804 ORTHO05D006849 9.1e-83 311.6 408 42.9
BcaC09g52237 Brassica carinata HOM05D005804 ORTHO05D006849 1.6e-82 310.8 435 43.2
EL10Ac5g11407 Beta vulgaris HOM05D005804 ORTHO05D006849 3.5e-82 309.7 532 39.1
BolC1t01947H Brassica oleracea HOM05D005804 ORTHO05D006849 3.5e-82 309.7 439 42.6
C01p20180 Brassica napus HOM05D005804 ORTHO05D006849 3.2e-80 303.1 433 42.3
Sed0001636 Sechium edule HOM05D005804 ORTHO05D006849 4.2e-80 302.8 425 44.7
CSS0001147 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 4.7e-79 299.3 246 63.8
Actinidia08874 Actinidia chinensis HOM05D005804 ORTHO05D006849 1.2e-74 284.6 264 56.8
Potri.012G098000 Populus trichocarpa HOM05D005804 ORTHO05D006849 5.0e-73 279.3 253 54.9
Zm00001eb102430 Zea mays HOM05D005804 ORTHO05D006849 2.1e-71 273.9 430 42.1
Manes.14G051101 Manihot esculenta HOM05D005804 ORTHO05D006849 6.1e-71 272.3 218 61.5
Eucgr.K02724 Eucalyptus grandis HOM05D005804 ORTHO05D006849 1.0e-70 271.6 312 52.6
RcHm_v2.0_Chr7g0190081 Rosa chinensis HOM05D005804 ORTHO05D006849 1.8e-67 260.8 193 72.0
unitig_26.g9610 Utricularia gibba HOM05D005804 ORTHO05D006849 9.2e-67 258.5 437 38.7
ECA247G1629 Erigeron canadensis HOM05D005804 ORTHO05D006849 4.0e-62 243.0 321 48.9
Gohir.A07G051132 Gossypium hirsutum HOM05D005804 ORTHO05D006849 8.9e-62 241.9 173 63.0
Nitab4.5_0001180g0250 Nicotiana tabacum HOM05D005804 ORTHO05D006849 1.1e-59 235.0 326 43.9
Gohir.D07G055532 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.9e-59 234.2 167 62.9
SEGI_29979 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 7.8e-58 228.8 450 33.6
Phvul.009G166301 Phaseolus vulgaris HOM05D005804 ORTHO05D006849 3.1e-54 216.9 175 57.1
Dinv11177 Davidia involucrata HOM05D005804 ORTHO05D006849 4.0e-54 216.5 266 53.4
Manes.14G051001 Manihot esculenta HOM05D005804 ORTHO05D006849 2.1e-50 204.1 159 68.6
AagrBONN_evm.TU.Sc2ySwM_362.247 Anthoceros agrestis HOM05D005804 ORTHO05D006849 5.1e-49 199.5 417 33.6
Lalb_Chr08g0237181 Lupinus albus HOM05D005804 ORTHO05D006849 2.5e-48 197.2 127 70.1
Carub.0007s1617 Capsella rubella HOM05D005804 ORTHO05D006849 3.3e-48 196.8 159 59.1
Gohir.D07G055466 Gossypium hirsutum HOM05D005804 ORTHO05D006849 1.2e-47 194.9 159 63.5
Gohir.A07G051066 Gossypium hirsutum HOM05D005804 ORTHO05D006849 2.8e-47 193.7 159 63.5
Lalb_Chr08g0237201 Lupinus albus HOM05D005804 ORTHO05D006849 8.1e-47 192.2 158 64.6
Os09g0506900 Oryza sativa ssp. japonica HOM05D005804 ORTHO05D006849 2.0e-45 187.6 187 50.3
CSS0012660 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 3.4e-45 186.8 163 61.3
Medtr2g045235 Medicago truncatula HOM05D005804 ORTHO05D006849 3.4e-45 186.8 169 59.2
AUR62034830 Chenopodium quinoa HOM05D005804 ORTHO05D006849 6.4e-44 182.6 247 44.5
AUR62034829 Chenopodium quinoa HOM05D005804 ORTHO05D006849 3.2e-43 180.3 239 44.8
SMO133G0032 Selaginella moellendorffii HOM05D005804 ORTHO05D006849 2.3e-41 174.1 408 31.6
Pp3c6_21480 Physcomitrium patens HOM05D005804 ORTHO05D006849 8.6e-41 172.2 476 30.0
CARHR232300 Cardamine hirsuta HOM05D005804 ORTHO05D006849 9.5e-40 168.7 229 45.0
ATR0178G019 Amborella trichopoda HOM05D005804 ORTHO05D006849 1.6e-39 167.9 129 60.5
CDE05G3468 Ceratophyllum demersum HOM05D005804 ORTHO05D006849 1.4e-38 164.9 290 40.7
SGA_v2.0_scaffold110G31174 Striga asiatica HOM05D052586 ORTHO05D006849 2.0e-37 161.0 113 58.4
vmacro16719 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 1.7e-36 157.9 176 52.8
Carub.0007s1616 Capsella rubella HOM05D005804 ORTHO05D006849 4.2e-35 153.3 186 49.5
ATR0178G002 Amborella trichopoda HOM05D005804 ORTHO05D006849 7.8e-34 149.1 280 38.9
vmacro16720 Vaccinium macrocarpon HOM05D005804 ORTHO05D006849 9.0e-30 135.6 141 52.5
SEGI_07598 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 1.9e-27 127.9 131 41.2
Dinv11175 Davidia involucrata HOM05D005804 ORTHO05D006849 2.7e-26 124.0 156 48.7
SEGI_03962 Sequoiadendron giganteum HOM05D005804 ORTHO05D006849 3.5e-26 123.6 352 31.0
Mapoly0096s0044 Marchantia polymorpha HOM05D005804 ORTHO05D006849 5.1e-25 119.8 133 36.8
Oeu016044.4 Olea europaea HOM05D005804 ORTHO05D006849 5.6e-24 116.3 172 40.7
Potri.015G096700 Populus trichocarpa HOM05D005804 ORTHO05D006849 5.6e-24 116.3 251 35.9
Mapoly0096s0043 Marchantia polymorpha HOM05D005804 ORTHO05D006849 7.3e-24 115.9 148 47.3
SalBow2G1912 Salvia bowleyana HOM05D000011 ORTHO05D000018 6.2e-23 112.8 134 47.8
Zm00001eb317740 Zea mays HOM05D005804 ORTHO05D006849 1.7e-20 104.8 101 57.4
CiPaw.12G043400 Carya illinoinensis HOM05D005804 ORTHO05D006849 6.2e-15 86.3 71 63.4
CSS0025658 Camellia sinensis var. sinensis HOM05D005804 ORTHO05D006849 4.5e-13 80.1 160 38.1
CBR_g12751 Chara braunii HOM05D005804 ORTHO05D006849 2.2e-12 77.8 168 33.9
Actinidia36808 Actinidia chinensis HOM05D005804 ORTHO05D006849 3.2e-11 73.9 71 52.1
Sabra15G0117400 Salix brachista HOM05D005804 ORTHO05D006849 1.3e-07 62.0 108 36.1


User provided reference genes

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