Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 4.8e-307 1057.0 528 100.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.5e-287 991.5 529 94.1
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 6.9e-245 850.5 523 82.2
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 5.1e-224 781.2 522 74.7
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 9.6e-223 776.9 522 74.3
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.3e-221 771.2 522 73.4
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 5.8e-220 767.7 505 75.8
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.5e-217 758.4 527 72.3
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 2.2e-214 749.2 519 72.1
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 6.1e-209 731.1 516 72.3
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.4e-208 729.9 526 70.3
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 4.8e-206 721.5 529 69.2
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.6e-204 715.7 529 69.8
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 2.6e-204 715.7 517 70.2
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 3.4e-204 715.3 510 70.2
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 5.9e-204 714.5 529 67.1
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 5.0e-203 711.4 555 68.1
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.0e-203 711.4 547 66.9
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 8.5e-203 710.7 527 67.7
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 5.5e-202 708.0 514 67.7
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 9.4e-202 707.2 530 67.4
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 1.2e-201 706.8 509 69.9
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.0e-200 703.7 549 67.0
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.9e-200 701.8 526 67.5
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.1e-199 700.3 514 68.3
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 2.6e-199 699.1 525 68.8
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 5.7e-199 698.0 489 72.6
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 2.8e-198 695.7 529 65.8
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.1e-197 692.2 534 67.0
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.2e-196 690.3 517 67.5
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 2.0e-196 689.5 531 65.5
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 3.4e-196 688.7 600 60.7
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.3e-195 686.8 529 65.6
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 4.2e-194 681.8 538 66.0
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.6e-193 679.9 531 66.3
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.4e-192 676.8 527 66.4
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.1e-191 673.7 528 64.8
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 3.3e-191 672.2 539 63.8
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 4.4e-191 671.8 526 65.6
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 5.7e-191 671.4 527 65.8
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.8e-189 666.4 527 64.1
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 5.3e-189 664.8 547 64.0
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.6e-188 663.3 530 65.5
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 1.5e-186 656.8 546 63.4
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 5.5e-186 654.8 532 64.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 6.1e-185 651.4 563 59.1
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 8.0e-185 651.0 527 63.4
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.0e-184 650.6 527 63.4
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 2.3e-184 649.4 544 62.1
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.0e-184 649.0 567 58.6
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 8.8e-184 647.5 531 63.1
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 2.0e-183 646.4 570 58.6
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 2.0e-183 646.4 510 63.9
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.6e-183 646.0 564 58.9
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 9.7e-183 644.0 529 63.9
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 1.3e-182 643.7 530 64.7
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.3e-182 643.7 527 63.0
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 2.2e-182 642.9 545 61.8
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.8e-182 642.5 555 58.6
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 3.5e-180 635.6 453 72.0
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 6.5e-179 631.3 599 59.3
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.5e-178 630.2 553 59.3
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 6.1e-177 624.8 518 62.2
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.4e-176 623.6 537 61.1
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 3.0e-176 622.5 562 59.3
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 3.4e-175 619.0 469 65.0
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 8.3e-174 614.4 552 58.7
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 5.4e-173 611.7 543 59.5
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 2.7e-172 609.4 533 60.6
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 5.0e-171 605.1 537 60.1
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 9.5e-170 600.9 518 59.8
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.8e-169 599.4 525 60.0
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 2.3e-168 596.3 528 59.7
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.7e-166 590.1 524 58.8
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.2e-166 589.7 532 59.4
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 3.7e-166 589.0 559 57.6
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 3.1e-165 585.9 548 57.3
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 8.6e-163 577.8 512 58.6
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.5e-162 576.2 514 58.0
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 4.3e-162 575.5 525 57.7
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 7.3e-162 574.7 529 57.7
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.6e-161 573.5 528 56.8
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.6e-161 573.5 482 60.4
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.8e-161 572.8 518 57.3
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.6e-161 572.4 531 56.5
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.0e-160 570.9 555 55.5
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 5.2e-160 568.5 533 58.7
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 6.8e-160 568.2 531 56.7
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 6.8e-160 568.2 539 54.9
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.0e-159 566.6 520 57.7
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 2.2e-158 563.1 517 57.4
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.2e-158 563.1 364 71.4
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.4e-157 560.5 523 56.8
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.9e-157 560.1 487 58.9
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 4.1e-157 558.9 521 56.2
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 4.6e-156 555.4 535 55.3
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.3e-154 549.3 532 55.8
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 4.7e-153 545.4 556 52.2
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 3.1e-152 542.7 536 53.9
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 4.0e-152 542.3 545 54.9
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 8.9e-152 541.2 490 57.1
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 3.4e-151 539.3 555 51.5
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.7e-147 526.9 364 68.7
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 5.1e-147 525.4 525 54.7
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.1e-146 524.2 389 64.5
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 3.6e-145 519.2 523 54.1
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 6.8e-144 515.0 555 50.3
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 9.9e-143 511.1 515 54.0
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.5e-138 496.5 522 52.9
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 9.5e-138 494.6 523 50.3
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.2e-137 494.2 511 50.9
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.1e-137 493.4 298 75.8
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 4.0e-136 489.2 511 49.5
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.0e-135 486.9 435 57.2
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 5.8e-135 485.3 484 53.5
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 6.4e-134 481.9 320 74.7
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 2.3e-131 473.4 510 50.0
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.6e-129 466.1 314 69.4
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.7e-129 465.7 322 68.0
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 4.0e-128 462.6 488 52.3
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.2e-126 456.8 530 50.2
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.9e-125 453.8 411 57.7
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.3e-121 441.0 482 50.4
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.4e-120 436.8 273 73.3
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.5e-114 416.8 546 41.9
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 9.6e-114 414.8 372 53.5
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.3e-113 414.5 547 41.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.3e-113 414.5 547 41.7
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 2.1e-113 413.7 566 41.7
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 6.2e-113 412.1 360 53.3
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 8.1e-113 411.8 566 41.5
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.1e-112 411.4 355 54.1
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.8e-112 410.6 581 41.0
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 2.4e-112 410.2 544 41.7
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.2e-110 403.7 381 50.4
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 3.8e-110 402.9 348 54.3
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 8.4e-110 401.7 489 45.4
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.2e-108 397.9 594 38.7
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.0e-107 394.8 573 40.1
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.0e-107 394.8 573 40.1
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.9e-107 392.9 561 40.1
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.9e-107 392.9 561 40.1
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.9e-106 390.6 281 61.9
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.8e-104 384.0 418 48.3
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.9e-104 382.1 453 47.5
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.2e-101 373.2 298 56.0
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.8e-99 367.5 522 40.8
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 6.7e-99 365.5 227 72.2
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 9.4e-93 345.1 208 75.5
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.0e-91 340.1 208 74.0
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 7.4e-90 335.5 394 50.3
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.4e-83 314.7 297 50.2
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 7.4e-74 282.3 538 37.7
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 1.7e-73 281.2 293 56.3
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 7.7e-63 245.7 335 46.9
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.2e-58 231.9 243 56.8
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 5.7e-58 229.6 531 34.7
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 3.3e-53 213.8 163 62.0
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 1.6e-52 211.5 570 30.9
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 4.7e-52 209.9 293 44.0
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 2.5e-45 187.6 124 72.6
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 4.0e-43 180.3 257 37.0
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 2.7e-39 167.5 133 57.9
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.7e-38 164.9 102 74.5
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.8e-35 152.9 83 85.5
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.3e-29 134.0 82 73.2
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 3.6e-28 130.6 133 48.1
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 8.9e-27 125.9 67 86.6
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 4.9e-25 120.2 65 86.2
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.1e-23 114.8 92 57.6
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.6e-20 105.1 226 34.5
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 4.7e-20 103.6 231 34.6
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.1e-15 88.2 230 31.7
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 1.1e-13 82.4 159 37.1
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 1.2e-07 62.4 352 24.1
Aa31LG3G7440 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.5e-07 60.8 63 52.4


User provided reference genes

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