Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 9.2e-161 570.1 272 100.0
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 8.9e-156 553.5 272 96.3
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.2e-152 543.1 272 94.5
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 7.8e-144 513.8 276 88.8
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.6e-141 505.0 280 87.1
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 8.1e-141 503.8 280 86.8
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.0e-140 501.5 280 86.4
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 6.9e-140 500.7 280 86.4
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.4e-139 498.0 257 91.1
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 2.4e-132 475.7 269 83.6
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 3.1e-132 475.3 256 85.9
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.5e-131 473.0 271 83.4
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 7.6e-131 470.7 268 81.3
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.3e-130 469.9 263 81.7
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 2.9e-130 468.8 270 81.1
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 6.4e-130 467.6 256 84.4
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 8.4e-130 467.2 265 82.6
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.6e-128 463.0 265 81.5
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 1.6e-128 463.0 263 80.6
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 3.5e-128 461.8 264 80.7
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 3.5e-128 461.8 266 81.2
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 3.5e-128 461.8 265 81.9
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 6.0e-128 461.1 263 81.0
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 7.9e-128 460.7 270 80.4
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 3.0e-127 458.8 270 79.3
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 3.9e-127 458.4 257 82.5
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 5.1e-127 458.0 263 82.1
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 5.1e-127 458.0 267 80.1
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 5.1e-127 458.0 267 80.1
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 6.7e-127 457.6 268 78.4
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.9e-126 456.1 264 79.2
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.9e-126 456.1 264 79.9
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.5e-126 455.7 266 80.8
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 2.5e-126 455.7 265 78.9
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 5.6e-126 454.5 256 82.4
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 2.1e-125 452.6 258 81.4
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 2.1e-125 452.6 263 80.6
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.1e-125 452.6 272 77.9
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.1e-125 452.6 263 79.1
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 4.8e-125 451.4 272 77.9
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 8.1e-125 450.7 252 81.7
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 8.1e-125 450.7 263 80.2
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 8.1e-125 450.7 264 78.0
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.1e-124 450.3 263 78.7
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.4e-124 449.9 272 77.6
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 1.4e-124 449.9 276 77.2
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.8e-124 449.5 272 76.5
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.8e-124 449.5 265 78.9
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.8e-124 449.5 257 81.7
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 2.4e-124 449.1 272 77.9
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 3.1e-124 448.7 272 77.2
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 4.0e-124 448.4 271 77.1
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 4.0e-124 448.4 263 80.2
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 6.9e-124 447.6 272 77.2
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 6.9e-124 447.6 271 78.2
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 1.2e-123 446.8 262 79.4
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 1.5e-123 446.4 270 77.4
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 2.6e-123 445.7 270 77.0
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.6e-123 445.7 265 78.5
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 3.4e-123 445.3 272 76.5
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 3.4e-123 445.3 266 78.2
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 3.4e-123 445.3 277 76.9
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 5.8e-123 444.5 263 76.4
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 7.6e-123 444.1 270 76.7
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.3e-122 443.4 265 77.7
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.7e-122 443.0 254 81.1
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 1.7e-122 443.0 277 76.2
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 2.2e-122 442.6 272 76.1
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 2.9e-122 442.2 264 78.8
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 1.4e-121 439.9 268 76.1
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.4e-121 439.9 263 79.8
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 2.5e-121 439.1 250 82.0
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 3.2e-121 438.7 263 78.3
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 4.2e-121 438.3 265 76.2
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 7.1e-121 437.6 264 78.4
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 2.1e-120 436.0 275 76.7
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 2.7e-120 435.6 275 75.6
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 2.7e-120 435.6 271 75.6
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.0e-119 433.7 265 77.7
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 5.1e-119 431.4 258 77.1
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.1e-118 430.3 264 75.4
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.1e-118 430.3 258 76.7
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.9e-118 429.5 272 74.6
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.3e-118 428.7 277 72.6
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.3e-117 426.8 256 77.3
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.6e-117 426.4 265 76.2
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.6e-117 426.4 270 75.9
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.8e-117 424.9 286 70.6
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 1.1e-116 423.7 272 73.2
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.8e-116 422.9 250 78.8
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.4e-116 422.5 284 71.1
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 4.5e-115 418.3 241 78.4
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.0e-114 417.2 256 75.8
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.3e-114 416.8 269 76.6
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.7e-114 416.4 259 76.1
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 3.8e-114 415.2 272 72.1
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 5.0e-114 414.8 289 68.9
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.4e-113 413.3 245 79.2
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 1.9e-113 412.9 260 73.1
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 2.1e-112 409.5 276 71.4
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 5.1e-111 404.8 268 73.1
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 5.1e-111 404.8 250 74.4
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 7.4e-110 401.0 277 72.2
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 2.8e-109 399.1 231 75.8
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 4.8e-109 398.3 256 74.6
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.1e-108 397.1 280 66.8
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 1.5e-107 393.3 231 74.5
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 3.8e-106 388.7 231 77.9
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.8e-103 379.8 222 79.3
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.9e-103 378.6 235 75.3
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 5.1e-103 378.3 286 66.8
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 6.7e-103 377.9 210 81.9
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.1e-102 377.1 226 76.1
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 3.4e-99 365.5 250 66.0
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.9e-98 362.5 237 65.8
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 1.9e-97 359.8 235 65.1
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 7.2e-97 357.8 220 69.1
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 3.3e-94 349.0 303 59.4
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 1.3e-93 347.1 193 81.3
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 4.1e-92 342.0 263 63.1
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 9.1e-92 340.9 242 62.8
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 1.6e-91 340.1 257 64.6
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 5.0e-90 335.1 231 70.1
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 7.2e-89 331.3 333 52.9
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 2.0e-86 323.2 281 59.8
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 8.2e-85 317.8 164 86.0
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 7.2e-81 304.7 215 60.9
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 8.0e-80 301.2 167 82.6
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.4e-78 295.4 198 65.2
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 3.5e-75 285.8 162 81.5
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 5.7e-70 268.5 157 80.9
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 2.1e-64 250.0 241 54.8
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.4e-63 247.3 163 74.2
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.7e-61 240.4 138 79.7
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 5.6e-57 225.3 214 56.5
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 2.7e-51 206.5 121 76.9
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.1e-49 201.1 121 75.2
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 8.9e-31 138.3 105 66.7
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 4.2e-28 129.4 82 76.8
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 4.2e-28 129.4 72 83.3
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 4.6e-27 125.9 81 74.1
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 1.4e-23 114.4 66 69.7
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 2.4e-23 113.6 65 76.9
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.8e-22 109.0 65 70.8
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 2.3e-18 97.1 52 78.8
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 3.9e-18 96.3 88 59.1
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 2.1e-16 90.5 64 68.8
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 1.5e-14 84.3 85 55.3
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 3.4e-14 83.2 84 50.0
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 6.4e-13 79.0 55 69.1
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 6.4e-13 79.0 55 70.9
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 2.4e-12 77.0 55 65.5
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 1.2e-11 74.7 73 49.3
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 3.5e-11 73.2 52 69.2
SEGI_34327 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 6.2e-08 62.4 97 42.3


User provided reference genes

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