Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 6.6e-99 364.0 179 100.0
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 4.3e-90 334.7 179 92.2
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 6.8e-88 327.4 179 89.9
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.3e-82 308.1 179 82.7
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.1e-81 305.8 179 82.1
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.1e-81 305.8 179 82.1
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.8e-81 304.7 179 82.1
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 4.8e-81 304.7 179 82.7
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.0e-80 301.6 179 80.4
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 8.7e-67 257.3 190 67.4
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.5e-66 256.5 183 73.2
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 2.5e-66 255.8 183 67.8
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.7e-65 251.9 182 69.8
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 6.2e-65 251.1 179 67.0
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.4e-64 250.0 179 67.0
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 3.1e-64 248.8 183 66.1
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 4.0e-64 248.4 187 67.4
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 5.3e-64 248.1 180 66.7
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.0e-63 246.1 179 64.8
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 2.6e-63 245.7 196 64.3
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.6e-63 245.7 179 65.4
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.4e-63 245.4 179 65.4
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 5.8e-63 244.6 189 66.7
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.3e-62 243.4 188 65.4
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.9e-62 242.3 189 66.7
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 4.9e-62 241.5 191 66.0
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.5e-62 241.1 181 65.2
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.1e-61 240.4 187 66.3
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.4e-61 240.0 182 67.6
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 1.9e-61 239.6 172 68.0
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.2e-61 238.8 185 63.8
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 7.1e-61 237.7 184 63.6
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 9.3e-61 237.3 186 64.5
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.7e-60 235.7 183 65.0
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 3.5e-60 235.3 179 63.7
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 3.5e-60 235.3 167 70.1
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.6e-60 235.0 185 64.9
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 4.6e-60 235.0 183 62.3
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 7.9e-60 234.2 185 63.8
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.0e-59 233.8 176 65.3
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 1.3e-59 233.4 226 58.4
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.8e-59 233.0 174 66.1
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 3.0e-59 232.3 185 63.2
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.1e-59 231.5 185 64.3
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 8.7e-59 230.7 178 62.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.1e-58 230.3 183 63.9
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 1.1e-58 230.3 186 61.3
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.9e-58 229.6 248 51.6
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 3.3e-58 228.8 225 54.7
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 3.3e-58 228.8 184 62.5
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 3.3e-58 228.8 183 60.1
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 4.3e-58 228.4 181 64.1
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 5.7e-58 228.0 142 74.6
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 7.4e-58 227.6 179 62.6
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 7.4e-58 227.6 190 60.0
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 9.6e-58 227.3 151 68.2
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 9.6e-58 227.3 185 60.5
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.6e-57 226.5 183 62.3
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.6e-57 226.5 191 61.3
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 2.1e-57 226.1 180 63.3
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 2.8e-57 225.7 151 66.9
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.7e-57 225.3 187 59.9
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 6.2e-57 224.6 179 63.1
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 6.2e-57 224.6 185 60.5
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 6.2e-57 224.6 185 61.6
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 8.2e-57 224.2 186 59.7
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 8.2e-57 224.2 179 63.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.1e-56 223.8 196 59.7
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.8e-56 223.0 192 58.9
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.4e-56 222.6 185 60.0
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 3.1e-56 222.2 179 61.5
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 4.0e-56 221.9 182 58.8
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 4.0e-56 221.9 185 61.1
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 5.3e-56 221.5 179 62.0
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 5.3e-56 221.5 142 72.5
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 6.9e-56 221.1 185 59.5
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 9.0e-56 220.7 184 59.8
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.2e-55 220.3 182 58.8
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.5e-55 219.9 163 65.0
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.5e-55 219.9 182 63.2
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 2.0e-55 219.5 179 64.2
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 2.6e-55 219.2 186 58.6
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.6e-55 219.2 139 74.8
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 3.4e-55 218.8 162 65.4
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 4.5e-55 218.4 185 56.8
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 7.6e-55 217.6 180 58.3
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 7.6e-55 217.6 180 58.3
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.0e-54 217.2 167 65.9
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.3e-54 216.9 163 64.4
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.3e-54 216.9 185 60.5
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.7e-54 216.5 185 56.2
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.7e-54 216.5 193 58.0
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.7e-54 216.5 272 46.7
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.7e-54 216.5 185 57.8
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 2.2e-54 216.1 181 59.7
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-54 216.1 188 58.5
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 2.9e-54 215.7 182 58.2
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 2.9e-54 215.7 186 57.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 2.9e-54 215.7 183 56.8
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 5.0e-54 214.9 188 58.0
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 5.0e-54 214.9 137 69.3
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 5.0e-54 214.9 181 60.2
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.1e-53 213.8 176 61.4
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.4e-53 213.4 189 57.1
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 2.5e-53 212.6 140 71.4
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 3.2e-53 212.2 128 74.2
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 4.2e-53 211.8 115 81.7
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 7.1e-53 211.1 181 60.2
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 9.3e-53 210.7 191 56.5
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 9.3e-53 210.7 128 73.4
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 3.5e-52 208.8 187 55.6
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.8e-51 206.5 204 54.9
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 2.3e-51 206.1 184 58.2
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 3.9e-51 205.3 185 55.7
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 6.7e-51 204.5 179 57.5
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 1.1e-50 203.8 194 55.2
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 5.7e-50 201.4 183 59.0
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 1.3e-49 200.3 129 70.5
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.4e-47 192.2 158 63.9
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 4.2e-45 185.3 118 70.3
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.7e-44 182.6 114 69.3
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 4.6e-44 181.8 113 70.8
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.1e-44 181.4 160 58.8
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.6e-39 166.0 123 60.2
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.3e-38 163.7 146 50.7
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.6e-36 156.8 123 56.9
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 8.8e-35 151.0 86 81.4
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.1e-34 150.6 87 73.6
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 2.8e-33 146.0 142 57.0
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 7.2e-29 131.3 72 77.8
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 2.1e-28 129.8 130 47.7
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 3.6e-28 129.0 80 75.0
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 8.0e-28 127.9 86 66.3
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.8e-27 126.7 78 67.9
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 8.8e-27 124.4 130 53.8
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 3.1e-24 115.9 72 65.3
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 9.1e-24 114.4 65 72.3
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 4.5e-23 112.1 112 56.2
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.5e-21 107.1 116 42.2
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 3.6e-20 102.4 165 35.2
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 4.0e-19 99.0 59 76.3
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 4.1e-16 89.0 83 55.4
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 3.7e-09 65.9 35 77.1
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.6e-07 60.5 63 41.3


User provided reference genes

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