Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1142800 Malus domestica HOM05D000087 ORTHO05D005735 2.3e-128 462.2 236 100.0
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 2.4e-101 372.5 233 84.1
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 3.8e-94 348.6 235 77.0
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 2.3e-91 339.3 230 72.6
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 3.9e-91 338.6 230 72.6
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 3.7e-89 332.0 230 72.6
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.8e-89 331.6 230 71.7
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.1e-88 328.6 230 70.9
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 7.9e-84 314.3 230 68.7
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 7.5e-58 228.0 240 52.1
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 9.7e-58 227.6 244 50.4
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.7e-57 226.9 241 51.9
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 2.2e-57 226.5 243 50.2
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 8.2e-57 224.6 244 50.0
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 5.9e-55 218.4 231 52.4
CiPaw.11G106300 Carya illinoinensis HOM05D000087 ORTHO05D005735 1.1e-53 214.2 254 46.1
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 1.1e-53 214.2 238 48.7
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 8.0e-52 208.0 238 49.6
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 1.0e-51 207.6 239 49.0
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 3.0e-51 206.1 237 48.5
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 3.0e-51 206.1 238 49.6
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 4.0e-51 205.7 238 49.2
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 2.0e-50 203.4 244 48.4
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 3.4e-50 202.6 243 46.9
Hma1.2p1_0198F.1_g085370 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 4.4e-50 202.2 239 46.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 7.5e-50 201.4 250 46.0
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 1.4e-48 197.2 239 46.9
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.4e-48 197.2 248 44.8
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 3.1e-48 196.1 246 45.9
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 1.7e-46 190.3 248 46.0
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 5.0e-46 188.7 240 43.8
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 2.7e-44 183.0 246 44.7
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 8.0e-44 181.4 248 44.8
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 3.0e-43 179.5 227 47.1
vmacro08520 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 6.8e-43 178.3 246 43.1
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 2.0e-42 176.8 239 39.3
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 1.1e-40 171.0 239 44.4
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 1.6e-39 167.2 270 37.8
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 3.5e-39 166.0 247 42.1
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 5.9e-39 165.2 238 40.8
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.0e-38 164.5 223 41.3
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 3.8e-38 162.5 240 38.3
Glyma.06G181000 Glycine max HOM05D000087 ORTHO05D005735 8.6e-38 161.4 246 40.7
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 8.6e-38 161.4 244 37.3
Duzib084G1107 Durio zibethinus HOM05D000087 ORTHO05D005735 2.5e-37 159.8 210 41.9
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 2.5e-37 159.8 236 39.8
Cpa.g.sc37.117 Carica papaya HOM05D000087 ORTHO05D005735 8.0e-36 154.8 253 43.1
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 1.0e-35 154.5 246 40.7
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 1.4e-35 154.1 309 33.7
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 1.8e-35 153.7 251 38.2
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 1.8e-35 153.7 242 37.2
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 3.0e-35 152.9 248 40.3
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 2.6e-34 149.8 253 36.8
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 4.4e-34 149.1 231 39.4
Oeu019648.1 Olea europaea HOM05D000087 ORTHO05D005735 9.8e-34 147.9 239 37.7
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 2.9e-33 146.4 250 39.6
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 2.9e-33 146.4 237 38.4
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 2.4e-32 143.3 241 39.4
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 4.1e-32 142.5 240 35.0
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 5.4e-32 142.1 231 41.1
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 5.4e-32 142.1 231 41.1
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 9.2e-32 141.4 231 41.1
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 9.2e-32 141.4 231 41.1
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 1.6e-31 140.6 241 37.8
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 5.9e-31 138.7 246 35.4
Ca_16291_v3 Cicer arietinum L. HOM05D000087 ORTHO05D005735 7.8e-31 138.3 244 38.1
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 4.3e-29 132.5 245 36.7
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 5.6e-29 132.1 242 35.5
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 5.6e-29 132.1 243 35.4
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 9.5e-29 131.3 234 37.2
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.6e-28 130.6 239 38.5
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 8.0e-28 128.3 245 36.3
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 8.3e-25 118.2 252 33.3
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 7.0e-24 115.2 267 33.3
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 1.7e-22 110.5 255 32.5
SalBow4G1355 Salvia bowleyana HOM05D000087 ORTHO05D005735 5.0e-22 109.0 231 32.0
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 7.3e-21 105.1 179 37.4
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 9.5e-21 104.8 237 31.2
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.8e-19 100.5 262 31.3
RcHm_v2.0_Chr7g0188101 Rosa chinensis HOM05D000087 ORTHO05D005735 3.1e-19 99.8 86 62.8
VMungo1127G1440 Vigna mungo HOM05D000087 ORTHO05D005735 2.0e-18 97.1 145 41.4
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 2.2e-17 93.6 246 30.1
MBI04_g07085_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 4.9e-17 92.4 95 48.4
MBI04_g39794_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 1.4e-16 90.9 95 48.4
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.9e-13 80.5 190 32.1
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 1.6e-12 77.4 135 35.6
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 3.6e-12 76.3 135 34.8
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 3.6e-12 76.3 135 34.8
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 2.3e-11 73.6 135 34.1
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 1.2e-10 71.2 135 33.3
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 6.4e-09 65.5 134 34.3
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 7.1e-08 62.0 77 45.5
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 1.7e-06 57.4 137 29.9
Ah.10g034360 Amaranthus hybridus HOM05D000087 ORTHO05D005735 2.3e-06 57.0 97 37.1
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.3e-06 57.0 150 24.0


User provided reference genes

Program Settings