Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1138600 Malus domestica HOM05D008304 ORTHO05D004056 6.2e-29 130.2 69 100.0
MD06G1122200 Malus domestica HOM05D008304 ORTHO05D004056 7.8e-24 113.2 69 88.4
Prupe.5G132900 Prunus persica HOM05D008304 ORTHO05D004056 7.3e-22 106.7 69 85.5
Cpa.g.sc37.98 Carica papaya HOM05D008304 ORTHO05D004056 6.0e-16 87.0 80 65.0
COL.COLO4_10829 Corchorus olitorius HOM05D008304 ORTHO05D004056 7.8e-16 86.7 81 65.4
QL02p027330 Quercus lobata HOM05D008304 ORTHO05D004056 2.3e-15 85.1 80 62.5
FvH4_5g10570 Fragaria vesca HOM05D008304 ORTHO05D004056 3.3e-14 81.3 70 71.4
FAN04G0709 Fragaria x ananassa HOM05D008304 ORTHO05D012179 3.3e-14 81.3 70 71.4
FAN13G2184 Fragaria x ananassa HOM05D008304 ORTHO05D012179 3.3e-14 81.3 70 71.4
FAN18G4101 Fragaria x ananassa HOM05D008304 ORTHO05D012179 3.3e-14 81.3 70 71.4
Duzib205G1739 Durio zibethinus HOM05D008304 ORTHO05D004056 4.3e-14 80.9 81 63.0
Thecc.03G217700 Theobroma cacao HOM05D008304 ORTHO05D004056 2.1e-13 78.6 79 63.3
Gohir.A12G241800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 1.4e-12 75.9 76 57.9
Gorai.008G260200 Gossypium raimondii HOM05D008304 ORTHO05D004056 1.4e-12 75.9 76 57.9
Manes.01G055200 Manihot esculenta HOM05D008304 ORTHO05D004056 3.1e-12 74.7 79 59.5
GSVIVG01019681001 Vitis vinifera HOM05D008304 ORTHO05D004056 3.1e-12 74.7 82 64.6
Gohir.D12G243000 Gossypium hirsutum HOM05D008304 ORTHO05D004056 6.9e-12 73.6 76 56.6
CiPaw.11G110100 Carya illinoinensis HOM05D008304 ORTHO05D004056 9.0e-12 73.2 85 56.5
Haze_09200 Corylus avellana HOM05D008304 ORTHO05D004056 2.0e-11 72.0 83 56.6
CANSAT21G0162 Cannabis sativa HOM05D008304 ORTHO05D004056 2.6e-11 71.6 79 63.3
TAR629G3464 Trochodendron aralioides HOM05D008304 ORTHO05D004056 3.4e-11 71.2 77 61.0
Atru.chr9.1863 Acer truncatum HOM05D008304 ORTHO05D004056 4.5e-11 70.9 72 66.7
Cfa011898 Carpinus fangiana HOM05D008304 ORTHO05D004056 5.8e-11 70.5 83 56.6
Gohir.D09G182600 Gossypium hirsutum HOM05D008304 ORTHO05D004056 5.8e-11 70.5 76 56.6
Gorai.006G204900 Gossypium raimondii HOM05D008304 ORTHO05D004056 5.8e-11 70.5 76 56.6
Actinidia22217 Actinidia chinensis HOM05D008304 ORTHO05D004056 7.6e-11 70.1 84 58.3
Ciclev10023139m.g Citrus clementina HOM05D008304 ORTHO05D004056 9.9e-11 69.7 81 58.0
Gohir.A09G187800 Gossypium hirsutum HOM05D008304 ORTHO05D004056 2.2e-10 68.6 76 55.3
Dinv12896 Davidia involucrata HOM05D008304 ORTHO05D004056 3.8e-10 67.8 82 53.7
ClCG01G001410 Citrullus lanatus HOM05D008304 ORTHO05D004056 4.9e-10 67.4 83 54.2
Sabra16G0303400 Salix brachista HOM05D008304 ORTHO05D004056 1.1e-09 66.2 69 55.1
RcHm_v2.0_Chr7g0187581 Rosa chinensis HOM05D008304 ORTHO05D004056 1.9e-09 65.5 72 56.9
Dinv18759 Davidia involucrata HOM05D008304 ORTHO05D004056 3.2e-09 64.7 93 47.3
CSS0003921 Camellia sinensis var. sinensis HOM05D008304 ORTHO05D004056 5.4e-09 63.9 89 51.7
Nitab4.5_0002520g0050 Nicotiana tabacum HOM05D008304 ORTHO05D004056 7.1e-09 63.5 88 48.9
Potri.011G151900 Populus trichocarpa HOM05D008304 ORTHO05D004056 7.1e-09 63.5 69 55.1
Oeu042857.1 Olea europaea HOM05D008304 ORTHO05D004056 9.3e-09 63.2 72 59.7
Potri.001G449633 Populus trichocarpa HOM05D008304 ORTHO05D004056 2.1e-08 62.0 69 52.2
MBI04_g22063_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 4.6e-08 60.8 77 53.2
Ca_01501_v3 Cicer arietinum L. HOM05D005953 ORTHO05D004056 7.9e-08 60.1 70 54.3
Lalb_Chr03g0029431 Lupinus albus HOM05D005953 ORTHO05D004056 7.9e-08 60.1 69 55.1
Oeu015753.1 Olea europaea HOM05D008304 ORTHO05D004056 1.3e-07 59.3 70 60.0
Sabra11G0136700 Salix brachista HOM05D008304 ORTHO05D004056 1.3e-07 59.3 69 52.2
Sabra11G0148600 Salix brachista HOM05D008304 ORTHO05D004056 1.3e-07 59.3 69 52.2
CDE04G3503 Ceratophyllum demersum HOM05D008304 ORTHO05D004056 1.8e-07 58.9 75 52.0
Medtr2g090340 Medicago truncatula HOM05D005953 ORTHO05D004056 1.8e-07 58.9 71 52.1
Sed0018210 Sechium edule HOM05D008304 ORTHO05D004056 1.8e-07 58.9 78 50.0
vmacro11488 Vaccinium macrocarpon HOM05D008304 ORTHO05D004056 2.3e-07 58.5 88 48.9
HPP92_014633 Vanilla planifolia HOM05D005953 ORTHO05D004056 3.0e-07 58.2 75 50.7
ATR0304G024 Amborella trichopoda HOM05D005953 ORTHO05D004056 3.9e-07 57.8 75 53.3
Sabra13G0111400 Salix brachista HOM05D005953 ORTHO05D004056 3.9e-07 57.8 67 56.7
Atru.chr6.2998 Acer truncatum HOM05D005953 ORTHO05D004056 5.1e-07 57.4 76 55.3
Thecc.02G179300 Theobroma cacao HOM05D005953 ORTHO05D004056 6.7e-07 57.0 79 53.2
MBI06_g06482_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 8.7e-07 56.6 79 50.6
Cc08_g16980 Coffea canephora HOM05D008304 ORTHO05D004056 1.1e-06 56.2 87 50.6
Peaxi162Scf00074g00131 Petunia axillaris HOM05D008304 ORTHO05D004056 1.1e-06 56.2 78 50.0
MELO3C013618.2 Cucumis melo HOM05D005953 ORTHO05D004056 1.5e-06 55.8 75 52.0
CsaV3_5G001550 Cucumis sativus L. HOM05D008304 ORTHO05D004056 1.5e-06 55.8 79 48.1
MBI07_g12792_MAGBIO Magnolia biondii HOM05D005953 ORTHO05D004056 1.5e-06 55.8 82 48.8
arahy.Tifrunner.gnm1.ann1.RLZ54R Arachis hypogaea HOM05D005953 ORTHO05D004056 1.9e-06 55.5 73 49.3
Migut.E00724 Erythranthe guttata HOM05D008304 ORTHO05D004056 1.9e-06 55.5 74 51.4
MBI12_g20132_MAGBIO Magnolia biondii HOM05D008304 ORTHO05D004056 1.9e-06 55.5 81 46.9
CARHR212450 Cardamine hirsuta HOM05D010428 ORTHO05D012179 2.5e-06 55.1 69 50.7
ECA233G3589 Erigeron canadensis HOM05D000020 ORTHO05D000543 2.5e-06 55.1 64 53.1
Migut.H01186 Erythranthe guttata HOM05D005953 ORTHO05D004056 2.5e-06 55.1 72 54.2
Thhalv10027949m.g Eutrema salsugineum HOM05D010428 ORTHO05D012179 2.5e-06 55.1 66 53.0
AT5G42110 Arabidopsis thaliana HOM05D010428 ORTHO05D012179 3.3e-06 54.7 69 53.6
Carub.0007s3322 Capsella rubella HOM05D010428 ORTHO05D012179 3.3e-06 54.7 69 52.2
CDE08G1618 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 3.3e-06 54.7 79 49.4
DCAR_021242 Daucus carota HOM05D005953 ORTHO05D004056 3.3e-06 54.7 72 51.4
HanXRQChr07g0192251 Helianthus annuus HOM05D010428 ORTHO05D012179 3.3e-06 54.7 66 54.5
Hma1.2p1_1201F.1_g266560 Hydrangea macrophylla HOM05D005953 ORTHO05D004056 3.3e-06 54.7 73 52.1
QL02p049480 Quercus lobata HOM05D005953 ORTHO05D004056 3.3e-06 54.7 74 54.1
QL08p038675 Quercus lobata HOM05D005953 ORTHO05D004056 3.3e-06 54.7 74 54.1
Eucgr.D01660 Eucalyptus grandis HOM05D008304 ORTHO05D004056 4.3e-06 54.3 82 46.3
Potri.019G100601 Populus trichocarpa HOM05D005953 ORTHO05D004056 4.3e-06 54.3 69 49.3
Sp7g00020 Schrenkiella parvula HOM05D010428 ORTHO05D012179 4.3e-06 54.3 69 52.2
Aqoxy1G02469 Aquilegia oxysepala HOM05D005953 ORTHO05D004056 5.6e-06 53.9 82 50.0
ECA246G2973 Erigeron canadensis HOM05D005953 ORTHO05D004056 5.6e-06 53.9 76 52.6
AL7G47030 Arabidopsis lyrata HOM05D010428 ORTHO05D012179 7.4e-06 53.5 69 52.2
arahy.Tifrunner.gnm1.ann1.XD6XV6 Arachis hypogaea HOM05D005953 ORTHO05D004056 7.4e-06 53.5 73 46.6
BcaB06g27689 Brassica carinata HOM05D010428 ORTHO05D012179 7.4e-06 53.5 69 52.2
CAN.G567.106 Capsicum annuum HOM05D008304 ORTHO05D004056 7.4e-06 53.5 76 47.4
Ciclev10017361m.g Citrus clementina HOM05D005953 ORTHO05D004056 7.4e-06 53.5 78 46.2
Nn1g06570 Nelumbo nucifera HOM05D005953 ORTHO05D004056 7.4e-06 53.5 82 48.8
CDE02G2683 Ceratophyllum demersum HOM05D005953 ORTHO05D004056 9.6e-06 53.1 76 46.1
Nn1g00437 Nelumbo nucifera HOM05D008304 ORTHO05D004056 9.6e-06 53.1 71 50.7


User provided reference genes

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