Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 3.6e-291 1004.2 507 100.0
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 8.5e-277 956.4 509 94.5
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 2.1e-267 925.2 507 90.7
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.7e-245 852.4 510 83.1
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.5e-244 848.6 510 84.1
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 9.5e-244 846.7 511 84.3
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 1.2e-241 839.7 514 83.1
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.0e-241 839.0 511 84.0
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 3.2e-239 831.6 511 82.8
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 1.5e-228 796.2 505 76.8
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 3.4e-225 785.0 507 77.1
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 1.1e-223 780.0 513 76.6
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 4.2e-223 778.1 517 76.4
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 7.1e-223 777.3 504 75.0
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 1.5e-220 769.6 508 74.4
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 2.5e-220 768.8 513 74.5
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 2.1e-219 765.8 507 74.2
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.8e-218 762.7 503 73.8
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 4.0e-218 761.5 503 73.6
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 5.3e-218 761.1 509 74.9
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 5.3e-218 761.1 504 74.4
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 9.0e-218 760.4 508 74.8
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 1.2e-217 760.0 516 74.2
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 1.5e-217 759.6 517 74.3
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 2.0e-217 759.2 512 74.6
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 2.2e-216 755.7 505 74.1
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 3.8e-216 755.0 525 71.8
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 4.9e-216 754.6 505 73.9
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 4.9e-216 754.6 503 73.2
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 6.4e-216 754.2 511 73.0
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 3.2e-215 751.9 514 74.9
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 3.2e-215 751.9 508 72.8
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 7.1e-215 750.7 507 73.4
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 7.1e-215 750.7 516 72.5
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 3.5e-214 748.4 522 72.4
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 5.6e-212 741.1 525 70.3
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 9.6e-212 740.3 563 67.0
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 2.8e-211 738.8 512 71.9
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 1.8e-210 736.1 528 70.3
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 4.0e-210 734.9 513 71.9
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 5.3e-210 734.6 503 71.8
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 9.9e-209 730.3 511 70.3
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 2.9e-208 728.8 506 71.1
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 7.1e-207 724.2 506 70.8
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 1.2e-206 723.4 493 72.2
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 1.2e-206 723.4 486 73.9
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 7.9e-206 720.7 507 70.2
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 4.3e-204 714.9 598 63.0
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 4.3e-204 714.9 506 69.0
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 1.3e-203 713.4 505 67.9
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 1.2e-201 706.8 503 70.4
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.0e-201 706.1 506 68.2
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 6.4e-200 701.0 504 68.8
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 3.0e-197 692.2 520 67.3
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 1.5e-196 689.9 503 69.0
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 2.1e-195 686.0 504 68.5
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 8.2e-195 684.1 508 67.3
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 5.3e-194 681.4 509 67.6
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 5.8e-193 677.9 520 64.2
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 4.9e-192 674.9 512 67.2
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.9e-189 665.2 520 63.8
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 1.8e-186 656.4 517 64.2
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 6.9e-186 654.4 527 63.2
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.0e-184 650.6 518 64.5
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 3.2e-183 645.6 512 64.6
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 7.2e-183 644.4 496 66.3
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 9.4e-183 644.0 538 61.5
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 1.6e-182 643.3 533 63.0
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 2.7e-182 642.5 515 64.3
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 1.1e-180 637.1 530 62.8
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 1.3e-179 633.6 465 68.6
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 1.7e-179 633.3 519 63.2
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 8.2e-179 630.9 458 69.0
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 1.1e-178 630.6 564 59.8
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.4e-178 630.2 517 60.5
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 3.8e-176 622.1 394 78.4
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 5.5e-175 618.2 533 58.2
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 6.1e-174 614.8 525 60.8
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 2.3e-173 612.8 518 61.4
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 2.3e-173 612.8 494 62.6
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.5e-172 610.1 518 61.2
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.5e-172 610.1 518 61.2
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.5e-172 610.1 518 61.2
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 3.3e-172 609.0 518 61.0
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.7e-171 606.7 555 58.6
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.0e-168 597.4 506 60.5
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 7.5e-156 554.7 402 68.2
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.2e-155 553.1 364 75.5
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 8.3e-155 551.2 501 56.5
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 1.7e-144 516.9 349 73.9
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 4.9e-139 498.8 278 90.3
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.1e-125 454.5 379 62.0
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 2.7e-121 439.9 469 54.4
Oeu058016.1 Olea europaea HOM05D005847 ORTHO05D007143 2.7e-121 439.9 498 51.6
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.5e-116 424.1 530 45.5
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 7.8e-113 411.8 531 45.4
Nitab4.5_0002027g0040 Nicotiana tabacum HOM05D005847 ORTHO05D007143 6.4e-107 392.1 490 49.0
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 2.4e-106 390.2 510 42.9
CDE04G1283 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 1.3e-96 357.8 253 70.4
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 1.3e-96 357.8 233 75.5
MSTRG.26906 Avicennia marina HOM05D005847 ORTHO05D007143 9.9e-92 341.7 253 68.0
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 8.7e-88 328.6 261 62.1
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 4.5e-84 316.2 556 35.1
QL10p010267 Quercus lobata HOM05D005847 ORTHO05D007143 1.6e-81 307.8 202 71.3
Cpa.g.sc15.20 Carica papaya HOM05D005847 ORTHO05D007143 1.8e-77 294.3 184 77.7
SHI06935 Sapria himalayana HOM05D005847 ORTHO05D007143 5.5e-74 282.7 457 39.2
Nn1g00324 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.8e-70 270.4 219 65.8
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 3.4e-68 263.5 237 56.5
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 1.5e-63 248.1 259 44.4
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 8.5e-59 232.3 247 49.0
Aqoxy5G04303 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.1e-57 227.6 213 58.2
RcHm_v2.0_Chr7g0205571 Rosa chinensis HOM05D005847 ORTHO05D007143 6.1e-57 226.1 247 55.5
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 3.7e-54 216.9 489 29.4
SEGI_09534 Sequoiadendron giganteum HOM05D005847 ORTHO05D007143 1.4e-48 198.4 180 56.1
Cpa.g.c33268 Carica papaya HOM05D005847 ORTHO05D007143 7.5e-47 192.6 147 63.9
RcHm_v2.0_Chr7g0205551 Rosa chinensis HOM05D005847 ORTHO05D007143 1.2e-44 185.3 258 47.3
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 4.0e-40 170.2 473 29.8
CDE04G2319 Ceratophyllum demersum HOM05D005847 ORTHO05D007143 5.2e-40 169.9 188 48.9
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 1.6e-33 148.3 487 27.3
Atru.chr1.1468 Acer truncatum HOM05D005847 ORTHO05D007143 1.7e-30 138.3 105 61.9
Cpa.g.sc15.22 Carica papaya HOM05D005847 ORTHO05D007143 1.3e-27 128.6 82 74.4
Nn1g00325 Nelumbo nucifera HOM05D005847 ORTHO05D007143 1.5e-26 125.2 96 65.6
AUR62019891 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.2e-25 122.1 117 49.6
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 2.9e-22 110.9 187 36.9
Os10g0520950 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 2.9e-22 110.9 121 51.2
QL02p028460 Quercus lobata HOM05D005847 ORTHO05D007143 3.5e-20 104.0 126 50.0
Lj3g0011757 Lotus japonicus HOM05D005847 ORTHO05D007143 1.1e-18 99.0 190 38.9
Medtr8g040720 Medicago truncatula HOM05D005847 ORTHO05D007143 6.2e-17 93.2 53 75.5
QL02p028464 Quercus lobata HOM05D005847 ORTHO05D007143 3.9e-11 73.9 89 43.8
Nitab4.5_0000109g0320 Nicotiana tabacum HOM05D005847 ORTHO05D007143 8.1e-09 66.2 45 68.9
Medtr8g040530 Medicago truncatula HOM05D005847 ORTHO05D007143 2.6e-07 61.2 65 53.8
Sabra03G0104700 Salix brachista HOM05D005847 ORTHO05D007143 8.3e-06 56.2 64 53.1


User provided reference genes

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