Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1134500 Malus domestica HOM05D003086 ORTHO05D003347 6.7e-27 123.6 80 100.0
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 1.7e-17 92.4 80 68.8
Prupe.5G126200 Prunus persica HOM05D003086 ORTHO05D003347 4.1e-16 87.8 81 64.2
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.1e-13 79.7 80 57.5
Psat7g022720 Pisum sativum HOM05D003086 ORTHO05D003347 2.7e-12 75.1 84 67.9
CiPaw.12G080100 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.6e-12 74.7 79 53.2
Lj4g0018385 Lotus japonicus HOM05D003086 ORTHO05D003347 1.0e-11 73.2 80 70.0
QL02p028382 Quercus lobata HOM05D003086 ORTHO05D003347 1.4e-11 72.8 77 54.5
FAN18G2695 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.8e-11 72.4 78 52.6
TWI60G1451 Tripterygium wilfordii HOM05D003086 ORTHO05D003347 1.8e-11 72.4 45 80.0
Sed0015662 Sechium edule HOM05D003086 ORTHO05D003347 3.0e-11 71.6 51 72.5
Medtr8g099965 Medicago truncatula HOM05D003086 ORTHO05D003347 4.0e-11 71.2 87 65.5
ClCG01G001890 Citrullus lanatus HOM05D003086 ORTHO05D003347 6.7e-11 70.5 45 73.3
MELO3C005750.2 Cucumis melo HOM05D003086 ORTHO05D003347 8.8e-11 70.1 45 73.3
Gorai.004G131100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.1e-10 69.7 45 75.6
FAN08G3604 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.5e-10 69.3 78 52.6
FAN13G3255 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.5e-10 69.3 78 51.3
Manes.02G005600 Manihot esculenta HOM05D003086 ORTHO05D003347 1.5e-10 69.3 78 50.0
Gohir.A08G111400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-10 68.9 45 75.6
Gohir.D08G124400 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-10 68.9 45 75.6
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 2.0e-10 68.9 45 75.6
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 3.3e-10 68.2 50 72.0
FvH4_5g11470 Fragaria vesca HOM05D003086 ORTHO05D003347 3.3e-10 68.2 78 51.3
Manes.01G053400 Manihot esculenta HOM05D003086 ORTHO05D003347 3.3e-10 68.2 76 50.0
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 3.3e-10 68.2 45 75.6
THA.LOC109116607 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 5.7e-10 67.4 45 73.3
Glyma.05G219700 Glycine max HOM05D003086 ORTHO05D003347 7.5e-10 67.0 47 68.1
Glyma.08G026000 Glycine max HOM05D003086 ORTHO05D003347 7.5e-10 67.0 47 68.1
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 9.7e-10 66.6 47 66.0
CsaV3_5G002030 Cucumis sativus L. HOM05D003086 ORTHO05D003347 9.7e-10 66.6 45 68.9
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 1.7e-09 65.9 47 63.8
FAN04G2505 Fragaria x ananassa HOM05D003086 ORTHO05D003347 1.7e-09 65.9 78 51.3
Potri.001G087200 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.2e-09 65.5 76 51.3
Sabra01G0063400 Salix brachista HOM05D003086 ORTHO05D003347 2.2e-09 65.5 77 49.4
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 2.8e-09 65.1 69 55.1
RcHm_v2.0_Chr7g0186341 Rosa chinensis HOM05D003086 ORTHO05D003347 2.8e-09 65.1 79 54.4
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 3.7e-09 64.7 45 68.9
Lalb_Chr05g0223911 Lupinus albus HOM05D003086 ORTHO05D003347 8.2e-09 63.5 83 61.4
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.8e-08 62.4 47 59.6
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 2.4e-08 62.0 47 61.7
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 2.4e-08 62.0 88 42.0
CiPaw.11G115700 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.1e-08 61.6 45 64.4
Sed0027058 Sechium edule HOM05D003086 ORTHO05D003347 4.1e-08 61.2 41 65.9
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.3e-08 60.8 47 57.4
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 5.3e-08 60.8 47 57.4
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 5.3e-08 60.8 80 46.2
Duzib084G0307 Durio zibethinus HOM05D003086 ORTHO05D003347 7.0e-08 60.5 42 71.4
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 7.0e-08 60.5 45 62.2
SHI06941 Sapria himalayana HOM05D003472 ORTHO05D004200 7.0e-08 60.5 75 44.0
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 9.1e-08 60.1 39 74.4
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.2e-07 59.7 89 41.6
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.2e-07 59.7 47 63.8
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.2e-07 59.7 80 43.8
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 1.2e-07 59.7 42 64.3
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 1.2e-07 59.7 47 57.4
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 1.6e-07 59.3 42 71.4
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.6e-07 59.3 42 71.4
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 1.6e-07 59.3 42 71.4
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.6e-07 59.3 90 41.1
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.6e-07 59.3 90 41.1
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 1.6e-07 59.3 43 60.5
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 2.0e-07 58.9 47 59.6
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.0e-07 58.9 40 72.5
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.0e-07 58.9 40 72.5
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 2.7e-07 58.5 47 55.3
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 2.7e-07 58.5 47 63.8
TPR.G3409 Trifolium pratense HOM05D003086 ORTHO05D003347 2.7e-07 58.5 90 52.2
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 3.5e-07 58.2 59 57.6
CiPaw.05G227500 Carya illinoinensis HOM05D003086 ORTHO05D003347 3.5e-07 58.2 47 55.3
Thhalv10026968m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 4.5e-07 57.8 42 69.0
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 4.5e-07 57.8 47 55.3
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 4.5e-07 57.8 42 66.7
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 5.9e-07 57.4 53 58.5
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 5.9e-07 57.4 53 58.5
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 5.9e-07 57.4 47 55.3
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 5.9e-07 57.4 42 61.9
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 5.9e-07 57.4 41 63.4
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 5.9e-07 57.4 45 55.6
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 7.7e-07 57.0 39 69.2
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 7.7e-07 57.0 39 69.2
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 7.7e-07 57.0 39 69.2
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 7.7e-07 57.0 47 55.3
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.7e-07 57.0 40 62.5
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 7.7e-07 57.0 45 55.6
CANSAT21G1677 Cannabis sativa HOM05D003086 ORTHO05D003347 1.0e-06 56.6 38 65.8
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.0e-06 56.6 47 57.4
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.3e-06 56.2 49 57.1
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.3e-06 56.2 49 57.1
BcaC09g50920 Brassica carinata HOM05D003086 ORTHO05D003347 1.3e-06 56.2 45 60.0
C01p19250 Brassica napus HOM05D003086 ORTHO05D003347 1.3e-06 56.2 45 60.0
BolC1t01850H Brassica oleracea HOM05D003086 ORTHO05D003347 1.3e-06 56.2 45 60.0
BraA01t01474Z Brassica rapa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 45 60.0
BraA08t32861Z Brassica rapa HOM05D003086 ORTHO05D003347 1.3e-06 56.2 45 60.0
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 1.3e-06 56.2 47 53.2
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 1.3e-06 56.2 39 66.7
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.3e-06 56.2 78 43.6
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.3e-06 56.2 78 43.6
Atru.chr9.1962 Acer truncatum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 43 62.8
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 39 69.2
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.7e-06 55.8 79 41.8
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 1.7e-06 55.8 39 69.2
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 1.7e-06 55.8 44 61.4
Lalb_Chr09g0332101 Lupinus albus HOM05D003086 ORTHO05D003347 1.7e-06 55.8 38 63.2
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 1.7e-06 55.8 40 62.5
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 2.2e-06 55.5 39 69.2
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 2.2e-06 55.5 39 69.2
BcaNung01108 Brassica carinata HOM05D003086 ORTHO05D003347 2.2e-06 55.5 45 57.8
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 2.2e-06 55.5 47 61.7
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 2.2e-06 55.5 45 55.6
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 2.2e-06 55.5 92 39.1
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 2.2e-06 55.5 46 54.3
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.2e-06 55.5 47 57.4
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 2.2e-06 55.5 47 59.6
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 2.9e-06 55.1 39 71.8
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 2.9e-06 55.1 39 71.8
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 2.9e-06 55.1 39 71.8
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 2.9e-06 55.1 39 71.8
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 2.9e-06 55.1 39 71.8
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 2.9e-06 55.1 39 71.8
Phvul.002G328908 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 2.9e-06 55.1 94 55.3
Potri.003G143800 Populus trichocarpa HOM05D003086 ORTHO05D003347 2.9e-06 55.1 65 56.9
Sp6g06680 Schrenkiella parvula HOM05D003086 ORTHO05D003347 2.9e-06 55.1 34 76.5
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 3.8e-06 54.7 45 53.3
AT1G64584 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 3.8e-06 54.7 42 66.7
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 3.8e-06 54.7 53 56.6
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 3.8e-06 54.7 53 56.6
AL7G29250 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 5.0e-06 54.3 41 63.4
AT4G24026 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 5.0e-06 54.3 41 63.4
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 5.0e-06 54.3 45 57.8
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 5.0e-06 54.3 84 42.9
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 6.5e-06 53.9 77 44.2
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 6.5e-06 53.9 39 61.5
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 6.5e-06 53.9 47 57.4
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 6.5e-06 53.9 43 58.1
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 6.5e-06 53.9 43 58.1
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 8.5e-06 53.5 85 42.4
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 8.5e-06 53.5 86 40.7


User provided reference genes

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