Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 4.3e-33 144.1 71 100.0
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 6.1e-32 140.2 71 94.4
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 1.4e-31 139.0 71 95.8
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 4.0e-31 137.5 71 93.0
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 6.8e-31 136.7 71 95.8
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 91.5
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 91.5
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 91.5
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 88.7
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 88.7
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 91.5
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 88.7
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 90.1
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 90.1
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 88.7
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 88.7
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 88.7
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 87.3
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 88.7
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 88.7
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 88.7
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 90.1
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 2.2e-29 131.7 71 87.3
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 2.2e-29 131.7 71 87.3
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 2.2e-29 131.7 71 90.1
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 2.2e-29 131.7 69 89.9
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 2.9e-29 131.3 71 87.3
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.9e-29 131.3 71 88.7
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 88.7
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 87.3
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 88.7
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 88.7
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 87.3
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 87.3
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 87.1
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 87.1
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 87.1
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 87.1
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 87.1
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 6.4e-29 130.2 70 87.1
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 87.3
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 85.9
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 85.9
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 85.9
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 85.9
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 85.9
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 85.9
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 85.9
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 87.3
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 85.9
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 87.3
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 87.3
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 87.3
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 85.9
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 3.2e-28 127.9 71 84.5
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 4.1e-28 127.5 71 84.5
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 4.1e-28 127.5 71 85.9
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 4.1e-28 127.5 71 85.9
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 4.1e-28 127.5 71 84.5
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 5.4e-28 127.1 70 87.1
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 5.4e-28 127.1 71 84.5
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 5.4e-28 127.1 71 84.5
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 7.0e-28 126.7 71 85.9
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 7.0e-28 126.7 71 84.5
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 7.0e-28 126.7 71 84.5
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 9.2e-28 126.3 71 85.9
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 9.2e-28 126.3 71 85.9
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 1.2e-27 125.9 70 85.7
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.2e-27 125.9 71 84.5
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.6e-27 125.6 70 85.7
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 1.6e-27 125.6 71 83.1
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 2.0e-27 125.2 70 85.7
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 2.7e-27 124.8 70 84.3
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 2.7e-27 124.8 71 84.5
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 3.5e-27 124.4 71 80.3
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 7.8e-27 123.2 71 83.1
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 1.3e-26 122.5 63 92.1
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.3e-26 122.5 71 84.5
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 1.7e-26 122.1 71 83.1
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 1.7e-26 122.1 71 83.1
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 2.3e-26 121.7 71 81.7
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 3.0e-26 121.3 71 80.3
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 3.0e-26 121.3 90 70.0
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 6.6e-26 120.2 71 81.7
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 5.6e-25 117.1 71 77.5
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 1.2e-24 115.9 70 77.1
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 6.2e-24 113.6 62 85.5
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 8.0e-24 113.2 71 71.8
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 1.4e-23 112.5 69 75.4
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 1.2e-22 109.4 99 59.6
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 2.0e-22 108.6 71 76.1
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 5.8e-22 107.1 69 72.5
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 1.1e-20 102.8 71 67.6
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 6.0e-19 97.1 56 82.1
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 6.6e-18 93.6 145 43.4
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 1.1e-17 92.8 63 74.6
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 2.5e-17 91.7 44 93.2
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 7.3e-17 90.1 50 86.0
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 3.6e-16 87.8 49 83.7
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 8.1e-16 86.7 53 75.5
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 2.3e-15 85.1 49 83.7
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 5.2e-15 84.0 48 81.2
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 7.5e-14 80.1 38 89.5
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 9.9e-14 79.7 48 75.0
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 9.9e-14 79.7 51 72.5
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 2.2e-13 78.6 62 62.9
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 3.7e-13 77.8 47 76.6
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 3.7e-13 77.8 69 55.1
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 3.7e-13 77.8 69 58.0
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 4.9e-13 77.4 62 59.7
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 2.4e-12 75.1 53 67.9
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 3.2e-12 74.7 71 52.1
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 9.2e-12 73.2 48 72.9
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 1.2e-11 72.8 70 52.9
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 2.7e-11 71.6 37 94.6
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 7.8e-11 70.1 36 94.4
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 7.8e-11 70.1 36 94.4
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 7.8e-11 70.1 36 94.4
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.0e-10 69.7 34 91.2
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 1.9e-09 65.5 38 81.6
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 5.6e-09 63.9 47 66.0
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 5.6e-09 63.9 43 74.4
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 9.5e-09 63.2 37 83.8
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 1.2e-08 62.8 43 72.1
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 2.8e-08 61.6 37 75.7


User provided reference genes

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