Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1131100 Malus domestica HOM05D002255 ORTHO05D002288 8.5e-129 463.8 248 100.0
MD06G1110100 Malus domestica HOM05D002255 ORTHO05D002288 4.4e-93 345.1 248 79.8
Prupe.5G123000 Prunus persica HOM05D002255 ORTHO05D002288 1.6e-58 230.3 251 56.6
FAN18G0019 Fragaria x ananassa HOM05D002255 ORTHO05D002288 9.3e-51 204.5 253 51.8
FvH4_5g04950 Fragaria vesca HOM05D002255 ORTHO05D002288 1.6e-50 203.8 253 51.8
RcHm_v2.0_Chr7g0194121 Rosa chinensis HOM05D002255 ORTHO05D002288 1.6e-50 203.8 239 52.3
FAN13G3015 Fragaria x ananassa HOM05D002255 ORTHO05D002288 3.9e-49 199.1 253 51.0
FAN08G1358 Fragaria x ananassa HOM05D002255 ORTHO05D002288 8.7e-49 198.0 253 51.0
QL02p029860 Quercus lobata HOM05D002255 ORTHO05D002288 2.1e-42 176.8 248 48.0
FAN18G0680 Fragaria x ananassa HOM05D002255 ORTHO05D002288 7.4e-40 168.3 251 43.8
Cfa011979 Carpinus fangiana HOM05D002255 ORTHO05D002288 9.0e-38 161.4 231 44.6
Ciclev10023315m.g Citrus clementina HOM05D002255 ORTHO05D002288 9.0e-38 161.4 250 44.4
Potri.001G089000 Populus trichocarpa HOM05D002255 ORTHO05D002288 2.9e-36 156.4 250 42.4
Atru.chr9.1928 Acer truncatum HOM05D002255 ORTHO05D002288 1.4e-35 154.1 253 43.9
CiPaw.12G081200 Carya illinoinensis HOM05D002255 ORTHO05D002288 4.2e-35 152.5 251 43.8
Sabra01G0065200 Salix brachista HOM05D002255 ORTHO05D002288 4.2e-35 152.5 248 42.3
Medtr8g099655 Medicago truncatula HOM05D002255 ORTHO05D002288 1.2e-34 151.0 244 41.4
Thecc.03G301000 Theobroma cacao HOM05D002255 ORTHO05D002288 1.2e-34 151.0 248 42.3
CANSAT21G1974 Cannabis sativa HOM05D002255 ORTHO05D002288 1.8e-33 147.1 261 39.8
COL.COLO4_10731 Corchorus olitorius HOM05D002255 ORTHO05D002288 2.3e-33 146.7 249 41.4
CiPaw.11G118700 Carya illinoinensis HOM05D002255 ORTHO05D002288 5.1e-33 145.6 250 43.2
Haze_09094 Corylus avellana HOM05D002255 ORTHO05D002288 1.1e-32 144.4 212 42.0
Ca_17465_v3 Cicer arietinum L. HOM05D002255 ORTHO05D002288 1.9e-32 143.7 252 39.7
Phvul.002G300100 Phaseolus vulgaris HOM05D002255 ORTHO05D002288 1.9e-32 143.7 245 39.2
VMungo0251G1524 Vigna mungo HOM05D002255 ORTHO05D002288 2.5e-32 143.3 248 38.7
TPR.G3449 Trifolium pratense HOM05D002255 ORTHO05D002288 1.6e-31 140.6 248 37.9
Duzib205G1099 Durio zibethinus HOM05D002255 ORTHO05D002288 2.1e-31 140.2 257 41.2
Gohir.A09G189700 Gossypium hirsutum HOM05D002255 ORTHO05D002288 3.7e-31 139.4 249 39.0
Gohir.D09G184400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.4e-30 137.5 249 38.6
FAN04G2345 Fragaria x ananassa HOM05D002255 ORTHO05D002288 1.8e-30 137.1 252 42.5
Lj4g0026828 Lotus japonicus HOM05D002255 ORTHO05D002288 1.2e-29 134.4 248 39.1
Manes.02G008000 Manihot esculenta HOM05D002255 ORTHO05D002288 1.2e-29 134.4 234 38.9
Gorai.006G206900 Gossypium raimondii HOM05D002255 ORTHO05D002288 2.6e-29 133.3 249 38.2
Glyma.08G024400 Glycine max HOM05D002255 ORTHO05D002288 4.5e-29 132.5 219 39.3
Psat7g024880 Pisum sativum HOM05D002255 ORTHO05D002288 2.2e-28 130.2 246 37.4
Glyma.05G218300 Glycine max HOM05D002255 ORTHO05D002288 6.5e-28 128.6 219 37.9
Nn1g00261 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.4e-27 127.5 247 36.0
Lalb_Chr05g0224011 Lupinus albus HOM05D002255 ORTHO05D002288 3.2e-27 126.3 229 37.1
QL02p029894 Quercus lobata HOM05D002255 ORTHO05D002288 7.1e-27 125.2 200 43.0
Eucgr.E00885 Eucalyptus grandis HOM05D002255 ORTHO05D002288 2.1e-26 123.6 254 35.4
CSS0048832 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 6.7e-25 118.6 243 36.6
Actinidia22177 Actinidia chinensis HOM05D002255 ORTHO05D002288 1.1e-24 117.9 242 37.2
Nn3g18976 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.1e-24 117.9 236 34.7
Hma1.2p1_0359F.1_g135100 Hydrangea macrophylla HOM05D002255 ORTHO05D002288 4.3e-24 115.9 234 37.2
Cpa.g.sc634.4 Carica papaya HOM05D002255 ORTHO05D002288 2.8e-23 113.2 232 36.2
MBI06_g13416_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 3.7e-23 112.8 240 35.4
Peaxi162Scf00102g01853 Petunia axillaris HOM05D002255 ORTHO05D002288 8.2e-23 111.7 251 33.9
Sed0012868 Sechium edule HOM05D002255 ORTHO05D002288 1.4e-22 110.9 250 33.2
TWI60G0014 Tripterygium wilfordii HOM05D002255 ORTHO05D002288 5.3e-22 109.0 233 32.2
CSS0015495 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 6.9e-22 108.6 252 34.9
ATR0602G057 Amborella trichopoda HOM05D002255 ORTHO05D002288 1.2e-21 107.8 218 34.9
Gohir.A02G099300 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.2e-21 107.8 233 36.1
Gohir.D03G084400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 4.5e-21 105.9 234 35.9
Gorai.003G078200 Gossypium raimondii HOM05D002255 ORTHO05D002288 4.5e-21 105.9 234 35.9
DCAR_006522 Daucus carota HOM05D002255 ORTHO05D002288 5.9e-21 105.5 267 32.2
ClCG07G011470 Citrullus lanatus HOM05D002255 ORTHO05D002288 1.0e-20 104.8 253 32.8
PSO384G0536 Papaver somniferum HOM05D002255 ORTHO05D002288 1.7e-20 104.0 219 33.8
CsaV3_4G006750 Cucumis sativus L. HOM05D002255 ORTHO05D002288 3.8e-20 102.8 242 32.2
EL10Ac5g12942 Beta vulgaris HOM05D002255 ORTHO05D002288 5.0e-20 102.4 221 34.8
Lsat_1_v5_gn_3_11301 Lactuca sativa HOM05D002255 ORTHO05D002288 6.5e-20 102.1 240 35.0
HanXRQChr17g0534981 Helianthus annuus HOM05D002255 ORTHO05D002288 1.9e-19 100.5 213 34.3
Lj2P163T54 Lonicera japonica HOM05D002255 ORTHO05D002288 3.2e-19 99.8 215 38.6
PGSC0003DMG400005843 Solanum tuberosum HOM05D002255 ORTHO05D002288 5.5e-19 99.0 246 31.7
AUR62019868 Chenopodium quinoa HOM05D002255 ORTHO05D002288 7.2e-19 98.6 221 34.4
PGR042G2287 Punica granatum HOM05D002255 ORTHO05D002288 7.2e-19 98.6 261 36.8
Sc01g0010380 Simmondsia chinensis HOM05D002255 ORTHO05D002288 1.6e-18 97.4 241 31.5
MELO3C016274.2 Cucumis melo HOM05D002255 ORTHO05D002288 2.1e-18 97.1 232 31.5
ECA246G0612 Erigeron canadensis HOM05D002255 ORTHO05D002288 2.1e-18 97.1 214 31.8
Sopen08g004240 Solanum pennellii HOM05D002255 ORTHO05D002288 1.4e-17 94.4 246 30.9
Solyc08g008360.2 Solanum lycopersicum HOM05D002255 ORTHO05D002288 1.8e-17 94.0 246 30.9
Aqoxy7G00071 Aquilegia oxysepala HOM05D002255 ORTHO05D002288 8.8e-17 91.7 278 27.3
QL02p029876 Quercus lobata HOM05D002255 ORTHO05D002288 4.3e-16 89.4 86 61.6
SEGI_25160 Sequoiadendron giganteum HOM05D002255 ORTHO05D002288 2.4e-14 83.6 227 29.5
AUR62010866 Chenopodium quinoa HOM05D002255 ORTHO05D002288 1.5e-13 80.9 210 31.0
ATR0078G028 Amborella trichopoda HOM05D002255 ORTHO05D002288 3.4e-13 79.7 250 29.2
Ah.12g052770 Amaranthus hybridus HOM05D002255 ORTHO05D002288 5.9e-13 79.0 210 30.5
Cfa003741 Carpinus fangiana HOM05D002255 ORTHO05D002288 7.7e-13 78.6 245 30.2
Nitab4.5_0007367g0010 Nicotiana tabacum HOM05D002255 ORTHO05D002288 1.3e-12 77.8 236 30.1
Dinv37512 Davidia involucrata HOM05D002255 ORTHO05D002288 2.2e-12 77.0 76 53.9
Haze_15727 Corylus avellana HOM05D002255 ORTHO05D002288 5.0e-12 75.9 245 29.4
Nitab4.5_0002231g0100 Nicotiana tabacum HOM05D002255 ORTHO05D002288 1.9e-11 73.9 252 28.6
Rhsim02G0246900 Rhododendron simsii HOM05D002255 ORTHO05D002288 1.6e-10 70.9 79 54.4
Sabra11G0146400 Salix brachista HOM05D002255 ORTHO05D002288 2.1e-10 70.5 222 28.8
Sc01g0010790 Simmondsia chinensis HOM05D002255 ORTHO05D002288 2.7e-10 70.1 236 30.1
QL08p047076 Quercus lobata HOM05D002255 ORTHO05D002288 3.6e-10 69.7 245 29.8
SGA_v2.0_scaffold104G30247 Striga asiatica HOM05D002255 ORTHO05D002288 3.6e-10 69.7 241 29.9
Prupe.2G196900 Prunus persica HOM05D002255 ORTHO05D002288 6.1e-10 68.9 245 28.2
ClCG07G008260 Citrullus lanatus HOM05D002255 ORTHO05D002288 7.9e-10 68.6 227 29.1
unitig_748.g7136 Utricularia gibba HOM05D002255 ORTHO05D002288 7.9e-10 68.6 238 29.0
THA.LOC104813045 Tarenaya hassleriana HOM05D012458 ORTHO05D014337 1.0e-09 68.2 103 37.9
Nitab4.5_0000479g0060 Nicotiana tabacum HOM05D002255 ORTHO05D002288 1.4e-09 67.8 248 25.8
Sed0000936 Sechium edule HOM05D002255 ORTHO05D002288 1.4e-09 67.8 225 28.9
QL02p029867 Quercus lobata HOM05D002255 ORTHO05D002288 1.8e-09 67.4 58 63.8
Lalb_Chr19g0130591 Lupinus albus HOM05D002255 ORTHO05D002288 2.3e-09 67.0 221 28.5
Peaxi162Scf00074g10019 Petunia axillaris HOM05D002255 ORTHO05D002288 2.3e-09 67.0 223 28.3
Nitab4.5_0003419g0080 Nicotiana tabacum HOM05D002255 ORTHO05D002288 3.9e-09 66.2 257 26.5
Ciclev10022281m.g Citrus clementina HOM05D002255 ORTHO05D002288 5.1e-09 65.9 222 28.8
Eucgr.E01061 Eucalyptus grandis HOM05D002255 ORTHO05D002288 5.1e-09 65.9 232 28.9
Glyma.19G259600 Glycine max HOM05D002255 ORTHO05D002288 6.7e-09 65.5 242 27.3
Ah.05g178990 Amaranthus hybridus HOM05D002255 ORTHO05D002288 1.1e-08 64.7 232 25.9
MELO3C016367.2 Cucumis melo HOM05D002255 ORTHO05D002288 1.1e-08 64.7 244 28.3
Nn3g18858 Nelumbo nucifera HOM05D002255 ORTHO05D002288 1.1e-08 64.7 245 26.5
Thecc.01G334100 Theobroma cacao HOM05D002255 ORTHO05D002288 1.1e-08 64.7 247 26.7
CANSAT56G1904 Cannabis sativa HOM05D002255 ORTHO05D002288 2.0e-08 63.9 233 27.5
CANSAT56G3209 Cannabis sativa HOM05D002255 ORTHO05D002288 2.0e-08 63.9 233 27.5
Thecc.03G218700 Theobroma cacao HOM05D002255 ORTHO05D002288 2.0e-08 63.9 235 27.2
Duzib138G1476 Durio zibethinus HOM05D002255 ORTHO05D002288 2.6e-08 63.5 244 25.8
QL02p029889 Quercus lobata HOM05D002255 ORTHO05D002288 2.6e-08 63.5 215 29.3
Manes.12G116600 Manihot esculenta HOM05D002255 ORTHO05D002288 4.4e-08 62.8 222 29.3
CANSAT21G2105 Cannabis sativa HOM05D002255 ORTHO05D002288 5.7e-08 62.4 222 28.4
CiPaw.01G082000 Carya illinoinensis HOM05D002255 ORTHO05D002288 5.7e-08 62.4 242 28.1
SalBow5G5501 Salvia bowleyana HOM05D002255 ORTHO05D002288 5.7e-08 62.4 233 27.5
TPR.G7743 Trifolium pratense HOM05D002255 ORTHO05D002288 7.4e-08 62.0 222 26.1
CsaV3_4G005840 Cucumis sativus L. HOM05D002255 ORTHO05D002288 9.7e-08 61.6 249 26.5
Glyma.03G260700 Glycine max HOM05D002255 ORTHO05D002288 9.7e-08 61.6 243 27.2
Nn1g00427 Nelumbo nucifera HOM05D002255 ORTHO05D002288 9.7e-08 61.6 242 28.1
Psat4g163560 Pisum sativum HOM05D002255 ORTHO05D002288 9.7e-08 61.6 254 26.4
COL.COLO4_06208 Corchorus olitorius HOM05D002255 ORTHO05D002288 1.3e-07 61.2 206 26.7
Eucgr.E00016 Eucalyptus grandis HOM05D002255 ORTHO05D002288 1.3e-07 61.2 223 26.9
MBI12_g16192_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 1.3e-07 61.2 235 28.1
Sc23g0001820 Simmondsia chinensis HOM05D002255 ORTHO05D002288 1.3e-07 61.2 240 25.8
VMungo0720G2656 Vigna mungo HOM05D002255 ORTHO05D002288 1.3e-07 61.2 250 25.2
Gohir.A08G109600 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.7e-07 60.8 223 28.7
Gohir.D08G122400 Gossypium hirsutum HOM05D002255 ORTHO05D002288 1.7e-07 60.8 223 28.7
Gorai.004G129100 Gossypium raimondii HOM05D002255 ORTHO05D002288 1.7e-07 60.8 223 28.7
Nitab4.5_0004249g0030 Nicotiana tabacum HOM05D002255 ORTHO05D002288 1.7e-07 60.8 236 25.0
PSO063G2959 Papaver somniferum HOM05D002255 ORTHO05D002288 1.7e-07 60.8 246 24.4
TAR374G1498 Trochodendron aralioides HOM05D002255 ORTHO05D002288 2.2e-07 60.5 244 25.8
Nitab4.5_0002053g0080 Nicotiana tabacum HOM05D002255 ORTHO05D002288 2.8e-07 60.1 242 25.6
Phvul.007G075200 Phaseolus vulgaris HOM05D002255 ORTHO05D002288 2.8e-07 60.1 225 24.9
Gohir.D09G182900 Gossypium hirsutum HOM05D002255 ORTHO05D002288 3.7e-07 59.7 240 27.1
Gorai.006G205200 Gossypium raimondii HOM05D002255 ORTHO05D002288 3.7e-07 59.7 240 27.1
MD01G1088400 Malus domestica HOM05D002255 ORTHO05D002288 3.7e-07 59.7 244 25.8
Actinidia22215 Actinidia chinensis HOM05D002255 ORTHO05D002288 4.8e-07 59.3 76 46.1
Ah.12g053310 Amaranthus hybridus HOM05D002255 ORTHO05D002288 4.8e-07 59.3 232 26.7
FAN13G0081 Fragaria x ananassa HOM05D002255 ORTHO05D002288 4.8e-07 59.3 82 40.2
PSO170G1572 Papaver somniferum HOM05D002255 ORTHO05D002288 4.8e-07 59.3 250 24.4
RcHm_v2.0_Chr7g0187471 Rosa chinensis HOM05D002255 ORTHO05D002288 4.8e-07 59.3 78 42.3
TWI14G0548 Tripterygium wilfordii HOM05D002255 ORTHO05D002288 4.8e-07 59.3 241 25.3
TAR375G0553 Trochodendron aralioides HOM05D002255 ORTHO05D002288 4.8e-07 59.3 245 27.3
CSS0018027 Camellia sinensis var. sinensis HOM05D002255 ORTHO05D002288 6.3e-07 58.9 222 26.6
COL.COLO4_10817 Corchorus olitorius HOM05D002255 ORTHO05D002288 6.3e-07 58.9 231 26.0
Lj3g0024476 Lotus japonicus HOM05D002255 ORTHO05D002288 6.3e-07 58.9 249 25.7
MBI04_g15572_MAGBIO Magnolia biondii HOM05D002255 ORTHO05D002288 6.3e-07 58.9 242 26.4
AUR62022502 Chenopodium quinoa HOM05D002255 ORTHO05D002288 8.2e-07 58.5 46 63.0
Migut.N02126 Erythranthe guttata HOM05D002255 ORTHO05D002288 8.2e-07 58.5 225 29.3
FAN04G0254 Fragaria x ananassa HOM05D002255 ORTHO05D002288 8.2e-07 58.5 78 42.3
FAN08G3252 Fragaria x ananassa HOM05D002255 ORTHO05D002288 8.2e-07 58.5 78 42.3
Rhsim02G0253400 Rhododendron simsii HOM05D002255 ORTHO05D002288 8.2e-07 58.5 208 26.4
THA.LOC104809298 Tarenaya hassleriana HOM05D002255 ORTHO05D002288 8.2e-07 58.5 229 26.2
DCAR_006563 Daucus carota HOM05D002255 ORTHO05D002288 1.1e-06 58.2 227 27.3
Oeu010729.1 Olea europaea HOM05D002255 ORTHO05D002288 1.1e-06 58.2 225 26.7
AUR62022671 Chenopodium quinoa HOM05D002255 ORTHO05D002288 1.4e-06 57.8 208 25.5
Glyma.09G129800 Glycine max HOM05D002255 ORTHO05D002288 1.4e-06 57.8 230 26.5
Lsat_1_v5_gn_0_45861 Lactuca sativa HOM05D002255 ORTHO05D002288 1.4e-06 57.8 223 26.5
Lsat_1_v5_gn_3_14761 Lactuca sativa HOM05D002255 ORTHO05D002288 1.4e-06 57.8 223 26.5
MD08G1186200 Malus domestica HOM05D002255 ORTHO05D002288 1.4e-06 57.8 244 24.6
Potri.011G153000 Populus trichocarpa HOM05D002255 ORTHO05D002288 1.4e-06 57.8 76 47.4
Duzib205G0269 Durio zibethinus HOM05D002255 ORTHO05D002288 1.8e-06 57.4 237 27.0
Manes.05G017000 Manihot esculenta HOM05D002255 ORTHO05D002288 2.4e-06 57.0 244 24.2
Prupe.5G132000 Prunus persica HOM05D002255 ORTHO05D002288 2.4e-06 57.0 76 43.4
Cfa011907 Carpinus fangiana HOM05D002255 ORTHO05D002288 3.1e-06 56.6 79 45.6
Eucgr.E01054 Eucalyptus grandis HOM05D002255 ORTHO05D002288 3.1e-06 56.6 249 26.1
MD07G1158800 Malus domestica HOM05D002255 ORTHO05D002288 3.1e-06 56.6 244 25.4
QL02p027560 Quercus lobata HOM05D002255 ORTHO05D002288 3.1e-06 56.6 79 43.0
Potri.002G178900 Populus trichocarpa HOM05D002255 ORTHO05D002288 4.1e-06 56.2 224 25.9
Aa31LG2G1750 Aethionema arabicum HOM05D002255 ORTHO05D002288 5.3e-06 55.8 206 23.3
arahy.Tifrunner.gnm1.ann1.I8323W Arachis hypogaea HOM05D002255 ORTHO05D002288 5.3e-06 55.8 234 25.6
Ciclev10024010m.g Citrus clementina HOM05D002255 ORTHO05D002288 5.3e-06 55.8 254 26.0
TWI15G0718 Tripterygium wilfordii HOM05D002255 ORTHO05D002288 5.3e-06 55.8 254 26.0
arahy.Tifrunner.gnm1.ann1.WLQ804 Arachis hypogaea HOM05D002255 ORTHO05D002288 7.0e-06 55.5 231 25.5
Medtr8g017100 Medicago truncatula HOM05D002255 ORTHO05D002288 7.0e-06 55.5 79 39.2
Oeu064420.1 Olea europaea HOM05D002255 ORTHO05D002288 7.0e-06 55.5 238 26.1
CDE12G0944 Ceratophyllum demersum HOM05D002255 ORTHO05D002288 9.1e-06 55.1 87 37.9
GSVIVG01019671001 Vitis vinifera HOM05D002255 ORTHO05D002288 9.1e-06 55.1 76 42.1


User provided reference genes

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