Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1130700 Malus domestica HOM05D002356 ORTHO05D002546 1.0e-25 119.4 63 100.0
MD06G1109600 Malus domestica HOM05D002356 ORTHO05D002546 2.7e-23 111.3 61 91.8
Prupe.5G122600 Prunus persica HOM05D002356 ORTHO05D002546 4.3e-21 104.0 58 89.7
RcHm_v2.0_Chr7g0194211 Rosa chinensis HOM05D002356 ORTHO05D002546 1.1e-19 99.4 61 78.7
Dinv37516 Davidia involucrata HOM05D002356 ORTHO05D002546 5.3e-19 97.1 61 78.7
FvH4_5g04871 Fragaria vesca HOM05D002356 ORTHO05D002546 5.3e-19 97.1 61 75.4
FAN08G0678 Fragaria x ananassa HOM05D002356 ORTHO05D007406 5.3e-19 97.1 61 75.4
FAN18G2206 Fragaria x ananassa HOM05D002356 ORTHO05D007406 9.0e-19 96.3 61 73.8
GSVIVG01019558001 Vitis vinifera HOM05D002356 ORTHO05D002546 1.2e-18 95.9 61 77.0
FAN13G1079 Fragaria x ananassa HOM05D002356 ORTHO05D007406 2.0e-18 95.1 61 73.8
FAN04G1057 Fragaria x ananassa HOM05D002356 ORTHO05D007406 7.6e-18 93.2 61 72.1
Thecc.03G300500 Theobroma cacao HOM05D002356 ORTHO05D002546 1.0e-17 92.8 61 70.5
Gorai.003G078500 Gossypium raimondii HOM05D002356 ORTHO05D002546 1.7e-17 92.0 61 73.8
Lj2A164G51 Lonicera japonica HOM05D002356 ORTHO05D002546 1.7e-17 92.0 61 70.5
Gohir.A02G099600 Gossypium hirsutum HOM05D002356 ORTHO05D002546 2.2e-17 91.7 61 72.1
CSS0009774 Camellia sinensis var. sinensis HOM05D002356 ORTHO05D002546 2.9e-17 91.3 61 72.1
Gohir.D03G084100 Gossypium hirsutum HOM05D002356 ORTHO05D002546 3.8e-17 90.9 61 72.1
TAR629G2074 Trochodendron aralioides HOM05D002356 ORTHO05D002546 8.5e-17 89.7 59 76.3
Nn1g00254 Nelumbo nucifera HOM05D002356 ORTHO05D002546 1.9e-16 88.6 61 70.5
Cfa011984 Carpinus fangiana HOM05D002356 ORTHO05D002546 3.2e-16 87.8 61 73.8
CiPaw.12G081500 Carya illinoinensis HOM05D002356 ORTHO05D002546 3.2e-16 87.8 61 73.8
Haze_09088 Corylus avellana HOM05D002356 ORTHO05D002546 3.2e-16 87.8 61 73.8
Atru.chr9.1925 Acer truncatum HOM05D002356 ORTHO05D002546 4.2e-16 87.4 61 68.9
COL.COLO4_10723 Corchorus olitorius HOM05D002356 ORTHO05D002546 4.2e-16 87.4 59 71.2
Duzib068G0700 Durio zibethinus HOM05D002356 ORTHO05D002546 5.5e-16 87.0 61 68.9
Actinidia22173 Actinidia chinensis HOM05D002356 ORTHO05D002546 1.6e-15 85.5 58 70.7
CSS0018780 Camellia sinensis var. sinensis HOM05D002356 ORTHO05D002546 1.6e-15 85.5 58 69.0
Cc08_g16250 Coffea canephora HOM05D002356 ORTHO05D002546 1.6e-15 85.5 57 73.7
PGR042G1872 Punica granatum HOM05D002356 ORTHO05D002546 2.1e-15 85.1 59 66.1
MELO3C005764.2 Cucumis melo HOM05D002356 ORTHO05D002546 2.7e-15 84.7 62 69.4
Potri.003G141500 Populus trichocarpa HOM05D002356 ORTHO05D002546 2.7e-15 84.7 58 67.2
CANSAT21G0917 Cannabis sativa HOM05D002356 ORTHO05D002546 4.6e-15 84.0 61 67.2
CsaV3_5G001880 Cucumis sativus L. HOM05D002356 ORTHO05D002546 4.6e-15 84.0 61 67.2
QL02p030067 Quercus lobata HOM05D002356 ORTHO05D002546 4.6e-15 84.0 57 71.9
TAR636G0446 Trochodendron aralioides HOM05D002356 ORTHO05D002546 4.6e-15 84.0 62 67.7
CSS0017927 Camellia sinensis var. sinensis HOM05D002356 ORTHO05D002546 6.1e-15 83.6 58 67.2
ClCG01G001740 Citrullus lanatus HOM05D002356 ORTHO05D002546 6.1e-15 83.6 61 67.2
Oeu055031.1 Olea europaea HOM05D002356 ORTHO05D002546 7.9e-15 83.2 61 63.9
vmacro11344 Vaccinium macrocarpon HOM05D002356 ORTHO05D002546 7.9e-15 83.2 62 62.9
Sed0005802 Sechium edule HOM05D002356 ORTHO05D002546 1.3e-14 82.4 61 65.6
Peaxi162Scf00074g00626 Petunia axillaris HOM05D002356 ORTHO05D002546 1.8e-14 82.0 58 70.7
Nitab4.5_0000798g0060 Nicotiana tabacum HOM05D002356 ORTHO05D002546 3.0e-14 81.3 58 69.0
unitig_748.g7409 Utricularia gibba HOM05D002356 ORTHO05D002546 3.0e-14 81.3 61 63.9
Nitab4.5_0005962g0030 Nicotiana tabacum HOM05D002356 ORTHO05D002546 3.9e-14 80.9 58 69.0
SalBow1G7163 Salvia bowleyana HOM05D002356 ORTHO05D002546 5.1e-14 80.5 61 65.6
Cpa.g.sc79.9 Carica papaya HOM05D002356 ORTHO05D002546 8.7e-14 79.7 61 65.6
Sed0017112 Sechium edule HOM05D002356 ORTHO05D002546 1.1e-13 79.3 61 63.9
MSTRG.11914 Avicennia marina HOM05D002356 ORTHO05D002546 1.5e-13 79.0 61 62.3
CAN.G567.10 Capsicum annuum HOM05D002356 ORTHO05D002546 1.5e-13 79.0 57 66.7
SGA_v2.0_scaffold726G53520 Striga asiatica HOM05D002356 ORTHO05D002546 1.9e-13 78.6 60 58.3
Sabra01G0066100 Salix brachista HOM05D002356 ORTHO05D002546 4.3e-13 77.4 58 63.8
TWI15G0564 Tripterygium wilfordii HOM05D002356 ORTHO05D002546 4.3e-13 77.4 58 63.8
Ciclev10024632m.g Citrus clementina HOM05D002356 ORTHO05D002546 5.7e-13 77.0 61 57.4
PSO063G4681 Papaver somniferum HOM05D002356 ORTHO05D002546 5.7e-13 77.0 61 63.9
Ah.12g052680 Amaranthus hybridus HOM05D002356 ORTHO05D002546 9.7e-13 76.3 58 56.9
Eucgr.E00881 Eucalyptus grandis HOM05D002356 ORTHO05D002546 2.8e-12 74.7 61 55.7
MBI06_g44796_MAGBIO Magnolia biondii HOM05D002356 ORTHO05D002546 2.8e-12 74.7 61 55.7
Potri.001G089700 Populus trichocarpa HOM05D002356 ORTHO05D002546 1.1e-11 72.8 58 58.6
EL10Ac5g12936 Beta vulgaris HOM05D002356 ORTHO05D002546 5.3e-11 70.5 58 53.4
DCAR_030608 Daucus carota HOM05D002356 ORTHO05D002546 5.3e-11 70.5 61 54.1
Glyma.11G016300 Glycine max HOM05D002356 ORTHO05D002546 5.3e-11 70.5 56 64.3
LjContig00222g0002051 Lotus japonicus HOM05D002356 ORTHO05D002546 1.2e-10 69.3 56 58.9
ATR0602G241 Amborella trichopoda HOM05D002356 ORTHO05D002546 1.5e-10 68.9 61 54.1
Lsat_1_v5_gn_3_11200 Lactuca sativa HOM05D002356 ORTHO05D002546 1.5e-10 68.9 61 52.5
Phvul.002G165300 Phaseolus vulgaris HOM05D002356 ORTHO05D002546 2.6e-10 68.2 56 58.9
ECA246G0396 Erigeron canadensis HOM05D002356 ORTHO05D002546 5.9e-10 67.0 61 50.8
Lalb_Chr16g0376881 Lupinus albus HOM05D002356 ORTHO05D002546 5.9e-10 67.0 56 60.7
Glyma.01G226400 Glycine max HOM05D002356 ORTHO05D002546 7.7e-10 66.6 56 60.7
Psat2g186000 Pisum sativum HOM05D002356 ORTHO05D002546 7.7e-10 66.6 56 55.4
VMungo1215G0377 Vigna mungo HOM05D002356 ORTHO05D002546 1.0e-09 66.2 56 53.6
THA.LOC104806441 Tarenaya hassleriana HOM05D002356 ORTHO05D002546 1.7e-09 65.5 58 53.4
Aa31LG6G7190 Aethionema arabicum HOM05D002356 ORTHO05D002546 3.8e-09 64.3 58 55.2
PGSC0003DMG400012268 Solanum tuberosum HOM05D002356 ORTHO05D002546 5.0e-09 63.9 49 63.3
ECA240G2397 Erigeron canadensis HOM05D002356 ORTHO05D002546 8.5e-09 63.2 61 45.9
Solyc08g082540.3 Solanum lycopersicum HOM05D002356 ORTHO05D002546 1.4e-08 62.4 47 63.8
Sopen08g030800 Solanum pennellii HOM05D002356 ORTHO05D002546 1.4e-08 62.4 47 63.8
Hund11379 Selenicereus undatus HOM05D002356 ORTHO05D002546 1.9e-08 62.0 47 61.7
TPR.G37955 Trifolium pratense HOM05D002356 ORTHO05D002546 1.9e-08 62.0 76 43.4
ECA240G4646 Erigeron canadensis HOM05D002356 ORTHO05D007307 7.2e-08 60.1 61 42.6
HanXRQChr17g0534941 Helianthus annuus HOM05D002356 ORTHO05D002546 1.2e-07 59.3 61 47.5
AUR62010861 Chenopodium quinoa HOM05D002356 ORTHO05D002546 2.1e-07 58.5 47 53.2
Dinv37402 Davidia involucrata HOM05D002356 ORTHO05D002546 2.1e-07 58.5 60 51.7
Os01g0599900 Oryza sativa ssp. japonica HOM05D002356 ORTHO05D002546 2.1e-07 58.5 57 47.4
AUR62019860 Chenopodium quinoa HOM05D002356 ORTHO05D006112 2.7e-07 58.2 62 45.2
SEGI_32465 Sequoiadendron giganteum HOM05D002356 ORTHO05D002546 2.7e-07 58.2 61 50.8
Sc23g0000030 Simmondsia chinensis HOM05D002356 ORTHO05D002546 2.7e-07 58.2 60 51.7
ATR1089G140 Amborella trichopoda HOM05D002356 ORTHO05D002546 3.6e-07 57.8 59 49.2
arahy.Tifrunner.gnm1.ann1.6P6FL8 Arachis hypogaea HOM05D002356 ORTHO05D002546 3.6e-07 57.8 53 56.6
Sc01g0010370 Simmondsia chinensis HOM05D002356 ORTHO05D002546 3.6e-07 57.8 47 59.6
Atru.chr4.19 Acer truncatum HOM05D002356 ORTHO05D002546 4.6e-07 57.4 61 44.3
arahy.Tifrunner.gnm1.ann1.Q3JEBE Arachis hypogaea HOM05D002356 ORTHO05D002546 4.6e-07 57.4 53 56.6
Sp7g21920 Schrenkiella parvula HOM05D002356 ORTHO05D002546 4.6e-07 57.4 58 48.3
PGR042G0815 Punica granatum HOM05D002356 ORTHO05D002546 6.1e-07 57.0 58 53.4
PSO017G6296 Papaver somniferum HOM05D002356 ORTHO05D002546 7.9e-07 56.6 60 46.7
MBI06_g32156_MAGBIO Magnolia biondii HOM05D002356 ORTHO05D002546 1.0e-06 56.2 60 50.0
QL03p014861 Quercus lobata HOM05D002356 ORTHO05D002546 1.4e-06 55.8 60 43.3
QL09p001459 Quercus lobata HOM05D002356 ORTHO05D002546 1.4e-06 55.8 60 43.3
Hund26942 Selenicereus undatus HOM05D002356 ORTHO05D002546 1.4e-06 55.8 58 46.6
HanXRQChr03g0083371 Helianthus annuus HOM05D002356 ORTHO05D002546 1.8e-06 55.5 61 41.0
PSO170G5396 Papaver somniferum HOM05D002356 ORTHO05D002546 1.8e-06 55.5 60 45.0
Thecc.08G181300 Theobroma cacao HOM05D002356 ORTHO05D002546 1.8e-06 55.5 60 46.7
TAR381G0803 Trochodendron aralioides HOM05D002356 ORTHO05D002546 1.8e-06 55.5 59 47.5
Oeu020623.1 Olea europaea HOM05D002356 ORTHO05D002546 2.3e-06 55.1 76 42.1
PGR102G0719 Punica granatum HOM05D002356 ORTHO05D002546 2.3e-06 55.1 58 41.4
GSVIVG01037194001 Vitis vinifera HOM05D002356 ORTHO05D002546 2.3e-06 55.1 60 45.0
MSTRG.1605 Avicennia marina HOM05D002356 ORTHO05D002546 3.0e-06 54.7 74 41.9
PSO782G3205 Papaver somniferum HOM05D002356 ORTHO05D002546 3.0e-06 54.7 60 48.3
arahy.Tifrunner.gnm1.ann1.32VGA6 Arachis hypogaea HOM05D002356 ORTHO05D002546 3.9e-06 54.3 60 45.0
arahy.Tifrunner.gnm1.ann1.FN14EQ Arachis hypogaea HOM05D002356 ORTHO05D002546 3.9e-06 54.3 60 45.0
Hma1.2p1_0016F.1_g010870 Hydrangea macrophylla HOM05D002356 ORTHO05D002546 3.9e-06 54.3 60 45.0
Lsat_1_v5_gn_6_83700 Lactuca sativa HOM05D002356 ORTHO05D002546 3.9e-06 54.3 61 44.3
Actinidia23297 Actinidia chinensis HOM05D002356 ORTHO05D002546 5.1e-06 53.9 60 43.3
Ciclev10025294m.g Citrus clementina HOM05D002356 ORTHO05D002546 5.1e-06 53.9 76 39.5
Thhalv10027053m.g Eutrema salsugineum HOM05D002356 ORTHO05D002546 5.1e-06 53.9 56 44.6
Lj7A416G39 Lonicera japonica HOM05D002356 ORTHO05D002546 6.7e-06 53.5 60 41.7
Zm00001eb357660 Zea mays HOM05D002356 ORTHO05D002546 6.7e-06 53.5 59 44.1
Atru.chr13.2529 Acer truncatum HOM05D002356 ORTHO05D002546 8.8e-06 53.1 61 42.6
EL10Ac1g01276 Beta vulgaris HOM05D002356 ORTHO05D002546 8.8e-06 53.1 60 41.7
Phvul.005G002700 Phaseolus vulgaris HOM05D002356 ORTHO05D002546 8.8e-06 53.1 60 45.0
THA.LOC104814484 Tarenaya hassleriana HOM05D002356 ORTHO05D002546 8.8e-06 53.1 60 36.7


User provided reference genes

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