Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 5.4e-104 380.9 187 100.0
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 8.7e-94 347.1 187 90.9
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 4.5e-90 334.7 183 91.3
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.9e-87 323.9 184 84.2
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 7.9e-87 323.9 183 85.8
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.5e-85 319.7 182 84.1
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.5e-85 319.7 182 84.1
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 5.7e-85 317.8 182 83.5
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.0e-81 307.0 192 78.6
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 9.4e-80 300.4 183 79.8
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 7.9e-79 297.4 181 79.6
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.8e-78 296.2 183 78.7
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 3.0e-78 295.4 184 79.3
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.5e-77 293.1 182 78.6
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.0e-77 292.7 181 78.5
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.3e-77 291.6 183 77.6
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 4.3e-77 291.6 180 77.8
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 9.7e-77 290.4 183 78.7
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.7e-76 289.7 183 77.6
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 3.7e-76 288.5 186 72.6
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 6.3e-76 287.7 183 77.0
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.8e-75 286.2 183 78.7
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.8e-75 286.2 183 78.7
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-75 286.2 176 76.7
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.8e-75 286.2 176 76.7
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 1.8e-75 286.2 181 77.9
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.9e-75 284.3 183 74.9
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 9.1e-75 283.9 178 78.1
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 2.0e-74 282.7 181 74.6
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 2.6e-74 282.3 181 75.1
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 3.4e-74 282.0 175 77.1
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 5.9e-74 281.2 175 76.6
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 1.0e-73 280.4 186 71.5
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 1.3e-73 280.0 176 77.8
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 1.3e-73 280.0 186 73.7
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.3e-73 280.0 183 76.5
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 2.9e-73 278.9 176 76.7
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 3.8e-73 278.5 179 75.4
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 5.0e-73 278.1 175 74.3
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 6.5e-73 277.7 176 76.1
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 6.5e-73 277.7 175 74.3
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 1.1e-72 276.9 174 77.6
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 1.1e-72 276.9 174 77.6
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 1.1e-72 276.9 174 77.6
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 1.1e-72 276.9 183 74.9
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 1.4e-72 276.6 176 76.7
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 2.5e-72 275.8 175 75.4
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 2.5e-72 275.8 175 74.3
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 4.2e-72 275.0 176 75.0
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 4.2e-72 275.0 176 75.6
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 5.5e-72 274.6 175 74.3
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 5.5e-72 274.6 175 77.1
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 7.2e-72 274.2 174 76.4
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 7.2e-72 274.2 174 76.4
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 7.2e-72 274.2 179 74.9
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 7.2e-72 274.2 182 73.6
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 7.2e-72 274.2 183 72.7
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 1.2e-71 273.5 176 75.6
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 1.2e-71 273.5 180 75.6
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 1.2e-71 273.5 175 75.4
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 2.1e-71 272.7 180 73.9
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 2.1e-71 272.7 188 71.8
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 2.3e-70 269.2 183 69.9
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 2.3e-70 269.2 176 74.4
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 3.0e-70 268.9 185 73.0
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 5.1e-70 268.1 176 75.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 5.1e-70 268.1 176 73.3
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 6.7e-70 267.7 183 72.7
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 6.7e-70 267.7 176 74.4
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 8.8e-70 267.3 162 79.0
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 2.6e-69 265.8 183 72.7
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 2.6e-69 265.8 185 70.8
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 3.3e-69 265.4 189 70.9
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 4.4e-69 265.0 176 73.3
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 5.7e-69 264.6 162 78.4
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 5.7e-69 264.6 219 63.0
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 7.4e-69 264.2 185 70.3
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 9.7e-69 263.8 183 71.6
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 9.7e-69 263.8 185 68.1
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 1.3e-68 263.5 181 72.4
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 2.2e-68 262.7 184 69.6
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 6.3e-68 261.2 180 72.2
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 1.1e-67 260.4 183 69.9
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.4e-67 260.0 176 71.0
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 3.1e-67 258.8 176 71.6
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 3.1e-67 258.8 176 71.6
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 3.1e-67 258.8 194 67.0
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 4.1e-67 258.5 185 70.8
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 5.3e-67 258.1 174 71.3
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 5.3e-67 258.1 188 69.7
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 5.3e-67 258.1 166 78.3
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 9.1e-67 257.3 184 72.8
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 1.2e-66 256.9 187 69.5
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.5e-66 256.5 181 70.7
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 2.6e-66 255.8 176 69.3
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 3.5e-66 255.4 187 66.8
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 4.5e-66 255.0 175 68.6
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 4.5e-66 255.0 178 72.5
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 1.0e-65 253.8 181 70.7
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.0e-65 253.8 185 68.6
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.7e-65 253.1 183 67.8
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.9e-65 252.3 185 69.7
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.9e-65 252.3 185 69.7
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 8.5e-65 250.8 185 68.1
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 1.5e-64 250.0 175 66.3
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.5e-64 250.0 173 69.9
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 1.9e-64 249.6 177 70.6
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 3.2e-64 248.8 176 68.8
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 3.2e-64 248.8 180 69.4
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 5.5e-64 248.1 182 67.0
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 5.5e-64 248.1 175 68.6
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 5.5e-64 248.1 179 67.6
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 1.6e-63 246.5 175 68.0
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.1e-63 246.1 176 67.6
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 3.6e-63 245.4 172 69.8
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 4.7e-63 245.0 187 65.8
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 6.1e-63 244.6 164 73.8
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.0e-62 243.8 182 63.2
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 3.0e-62 242.3 175 65.1
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 3.0e-62 242.3 187 65.8
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 5.2e-62 241.5 187 65.8
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 5.2e-62 241.5 187 65.8
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 1.1e-61 240.4 183 65.6
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 1.5e-61 240.0 182 61.0
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 2.6e-61 239.2 190 65.8
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.3e-60 236.9 175 63.4
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 1.7e-60 236.5 175 66.3
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 6.3e-60 234.6 181 61.3
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 8.2e-60 234.2 183 64.5
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 9.1e-59 230.7 161 70.8
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 1.7e-57 226.5 162 69.1
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.7e-57 226.5 165 66.1
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 2.2e-57 226.1 179 60.3
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 5.0e-57 224.9 162 67.9
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 7.2e-56 221.1 162 67.3
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 9.4e-56 220.7 162 66.7
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 8.0e-55 217.6 274 45.6
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 4.0e-54 215.3 126 80.2
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 5.2e-54 214.9 176 64.2
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.1e-51 207.2 127 74.8
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 3.1e-51 205.7 156 62.8
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 5.4e-51 204.9 180 60.0
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 5.4e-51 204.9 148 67.6
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.7e-50 202.6 137 73.0
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.0e-49 200.7 202 55.9
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.0e-49 200.7 202 55.9
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 1.9e-48 196.4 128 70.3
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 2.8e-44 182.6 109 78.9
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 3.1e-43 179.1 125 70.4
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 7.2e-40 167.9 166 51.2
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.6e-31 140.2 116 62.9
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 1.8e-30 136.7 169 44.4
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.0e-21 106.7 101 50.5
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 4.9e-20 102.1 109 49.5
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 1.0e-17 94.4 67 67.2
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 2.5e-16 89.7 171 31.6
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.8e-14 83.6 48 72.9
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 4.0e-14 82.4 66 60.6
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 8.9e-14 81.3 49 79.6


User provided reference genes

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