Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1126500 Malus domestica HOM05D005517 ORTHO05D006760 5.7e-30 133.7 70 100.0
MD06G1118400 Malus domestica HOM05D005517 ORTHO05D006760 1.0e-26 122.9 66 95.5
RcHm_v2.0_Chr1g0371371 Rosa chinensis HOM05D005517 ORTHO05D006760 3.7e-21 104.4 70 77.1
RcHm_v2.0_Chr7g0186891 Rosa chinensis HOM05D005517 ORTHO05D006760 3.7e-21 104.4 70 77.1
FvH4_5g10930 Fragaria vesca HOM05D005517 ORTHO05D006760 1.1e-20 102.8 72 75.0
FAN08G0577 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.1e-20 102.8 72 75.0
FAN13G3313 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.1e-20 102.8 72 75.0
FAN18G2496 Fragaria x ananassa HOM05D005517 ORTHO05D006760 1.1e-20 102.8 72 75.0
Prupe.5G129500 Prunus persica HOM05D005517 ORTHO05D006760 1.4e-20 102.4 73 78.1
Lalb_Chr16g0380111 Lupinus albus HOM05D005517 ORTHO05D006760 1.5e-19 99.0 76 75.0
PSO210G3561 Papaver somniferum HOM05D005517 ORTHO05D006760 2.0e-19 98.6 72 73.6
Aa31LG5G11080 Aethionema arabicum HOM05D005517 ORTHO05D006760 4.5e-19 97.4 76 69.7
Lalb_Chr05g0214841 Lupinus albus HOM05D005517 ORTHO05D006760 7.7e-19 96.7 71 74.6
Glyma.16G054600 Glycine max HOM05D005517 ORTHO05D006760 1.0e-18 96.3 78 65.4
Psat5g229880 Pisum sativum HOM05D005517 ORTHO05D006760 1.0e-18 96.3 73 69.9
Atru.chr6.2589 Acer truncatum HOM05D005517 ORTHO05D006760 1.3e-18 95.9 74 71.6
CsaV3_3G026940 Cucumis sativus L. HOM05D005517 ORTHO05D006760 2.2e-18 95.1 73 74.0
Lj1g0000511 Lotus japonicus HOM05D005517 ORTHO05D006760 2.2e-18 95.1 77 67.5
TPR.G30072 Trifolium pratense HOM05D005517 ORTHO05D006760 2.9e-18 94.7 73 72.6
Glyma.19G093900 Glycine max HOM05D005517 ORTHO05D006760 3.8e-18 94.4 78 67.9
PSO302G0245 Papaver somniferum HOM05D005517 ORTHO05D006760 5.0e-18 94.0 72 69.4
BcaC04g19059 Brassica carinata HOM05D005517 ORTHO05D006760 6.5e-18 93.6 74 64.9
C09p63000 Brassica napus HOM05D005517 ORTHO05D006760 6.5e-18 93.6 74 64.9
BolC9t59138H Brassica oleracea HOM05D005517 ORTHO05D006760 6.5e-18 93.6 74 64.9
CARHR199240 Cardamine hirsuta HOM05D005517 ORTHO05D006760 8.5e-18 93.2 75 65.3
BcaB08g36959 Brassica carinata HOM05D005517 ORTHO05D006760 1.1e-17 92.8 74 64.9
ClCG05G013610 Citrullus lanatus HOM05D005517 ORTHO05D006760 1.1e-17 92.8 77 70.1
A10p24320 Brassica napus HOM05D005517 ORTHO05D006760 1.4e-17 92.4 74 63.5
BraA10t44498Z Brassica rapa HOM05D005517 ORTHO05D006760 1.4e-17 92.4 74 63.5
Cpa.g.sc70.124 Carica papaya HOM05D005517 ORTHO05D006760 1.4e-17 92.4 73 69.9
MELO3C014894.2 Cucumis melo HOM05D005517 ORTHO05D006760 1.9e-17 92.0 73 74.0
Medtr3g007670 Medicago truncatula HOM05D005517 ORTHO05D006760 1.9e-17 92.0 75 70.7
Aa31LG11G14910 Aethionema arabicum HOM05D005517 ORTHO05D006760 2.5e-17 91.7 75 65.3
BcaB01g06344 Brassica carinata HOM05D005517 ORTHO05D006760 2.5e-17 91.7 75 64.0
Carub.0006s1230 Capsella rubella HOM05D005517 ORTHO05D006760 2.5e-17 91.7 76 63.2
Medtr7g028755 Medicago truncatula HOM05D005517 ORTHO05D006760 2.5e-17 91.7 77 68.8
THA.LOC104803813 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 2.5e-17 91.7 75 62.7
CiPaw.03G057500 Carya illinoinensis HOM05D005517 ORTHO05D006760 3.2e-17 91.3 78 66.7
Ciclev10017370m.g Citrus clementina HOM05D005517 ORTHO05D006760 4.2e-17 90.9 74 66.2
Ca_26962_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 5.5e-17 90.5 76 68.4
arahy.Tifrunner.gnm1.ann1.3828X0 Arachis hypogaea HOM05D005517 ORTHO05D006760 7.2e-17 90.1 75 64.0
Duzib187G1036 Durio zibethinus HOM05D005517 ORTHO05D006760 7.2e-17 90.1 69 71.0
Migut.F00052 Erythranthe guttata HOM05D005517 ORTHO05D006760 9.4e-17 89.7 74 64.9
CAN.G473.115 Capsicum annuum HOM05D005517 ORTHO05D006760 1.6e-16 89.0 74 68.9
Cc03_g13370 Coffea canephora HOM05D005517 ORTHO05D006760 1.6e-16 89.0 74 67.6
Sabra17G0058600 Salix brachista HOM05D005517 ORTHO05D006760 1.6e-16 89.0 72 68.1
TAR371G1004 Trochodendron aralioides HOM05D005517 ORTHO05D006760 1.6e-16 89.0 78 66.7
Phvul.001G091300 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 2.7e-16 88.2 78 62.8
AT5G14105 Arabidopsis thaliana HOM05D005517 ORTHO05D006760 3.6e-16 87.8 76 61.8
COL.COLO4_13282 Corchorus olitorius HOM05D005517 ORTHO05D006760 3.6e-16 87.8 68 70.6
Duzib264G0094 Durio zibethinus HOM05D005517 ORTHO05D006760 3.6e-16 87.8 69 69.6
Potri.017G066388 Populus trichocarpa HOM05D005517 ORTHO05D006760 3.6e-16 87.8 73 67.1
Thecc.04G039500 Theobroma cacao HOM05D005517 ORTHO05D006760 3.6e-16 87.8 69 69.6
GSVIVG01028670001 Vitis vinifera HOM05D005517 ORTHO05D006760 3.6e-16 87.8 76 63.2
Manes.15G162502 Manihot esculenta HOM05D005517 ORTHO05D006760 4.7e-16 87.4 78 66.7
Potri.001G328100 Populus trichocarpa HOM05D005517 ORTHO05D006760 4.7e-16 87.4 78 65.4
Gohir.A07G229900 Gossypium hirsutum HOM05D005517 ORTHO05D006760 6.1e-16 87.0 68 70.6
Gohir.D07G237100 Gossypium hirsutum HOM05D005517 ORTHO05D006760 6.1e-16 87.0 68 70.6
Gorai.001G273000 Gossypium raimondii HOM05D005517 ORTHO05D006760 6.1e-16 87.0 68 70.6
Cc10_g16370 Coffea canephora HOM05D005517 ORTHO05D006760 8.0e-16 86.7 74 67.6
HPP92_000894 Vanilla planifolia HOM05D005517 ORTHO05D006760 8.0e-16 86.7 78 61.5
A02p02340 Brassica napus HOM05D005517 ORTHO05D006760 1.0e-15 86.3 74 60.8
BraA02t05205Z Brassica rapa HOM05D005517 ORTHO05D006760 1.0e-15 86.3 74 60.8
CANSAT64G1159 Cannabis sativa HOM05D005517 ORTHO05D006760 1.0e-15 86.3 78 64.1
Eucgr.H04420 Eucalyptus grandis HOM05D005517 ORTHO05D006760 1.0e-15 86.3 77 66.2
HanXRQChr02g0035131 Helianthus annuus HOM05D005517 ORTHO05D006760 1.0e-15 86.3 69 68.1
TAR629G2363 Trochodendron aralioides HOM05D005517 ORTHO05D006760 1.0e-15 86.3 78 62.8
Hma1.2p1_1057F.1_g252720 Hydrangea macrophylla HOM05D005517 ORTHO05D006760 1.4e-15 85.9 70 64.3
Prupe.2G009500 Prunus persica HOM05D005517 ORTHO05D006760 1.4e-15 85.9 70 71.4
Dinv25651 Davidia involucrata HOM05D005517 ORTHO05D006760 1.8e-15 85.5 74 64.9
CSS0012820 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 2.3e-15 85.1 74 64.9
Dinv33325 Davidia involucrata HOM05D005517 ORTHO05D006760 2.3e-15 85.1 74 63.5
Thhalv10021865m.g Eutrema salsugineum HOM05D005517 ORTHO05D006760 2.3e-15 85.1 77 59.7
HanXRQChr16g0497941 Helianthus annuus HOM05D005517 ORTHO05D006760 2.3e-15 85.1 69 66.7
Sopen04g004730 Solanum pennellii HOM05D005517 ORTHO05D006760 2.3e-15 85.1 74 64.9
PGSC0003DMG400032535 Solanum tuberosum HOM05D005517 ORTHO05D006760 2.3e-15 85.1 74 64.9
Lsat_1_v5_gn_1_29421 Lactuca sativa HOM05D005517 ORTHO05D006760 3.0e-15 84.7 69 65.2
MBI06_g06692_MAGBIO Magnolia biondii HOM05D005517 ORTHO05D006760 3.0e-15 84.7 73 64.4
TWI74G0054 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 3.0e-15 84.7 77 61.0
TWI74G0227 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 3.0e-15 84.7 77 61.0
PGR142G3118 Punica granatum HOM05D005517 ORTHO05D006760 3.9e-15 84.3 75 62.7
BcaNung06018 Brassica carinata HOM05D005517 ORTHO05D006760 5.2e-15 84.0 74 59.5
ECA232G0857 Erigeron canadensis HOM05D005517 ORTHO05D006760 5.2e-15 84.0 69 66.7
Nitab4.5_0007375g0080 Nicotiana tabacum HOM05D005517 ORTHO05D006760 5.2e-15 84.0 74 63.5
Ca_14034_v3 Cicer arietinum L. HOM05D005517 ORTHO05D006760 6.7e-15 83.6 69 65.2
BcaC03g13514 Brassica carinata HOM05D005517 ORTHO05D006760 8.8e-15 83.2 74 59.5
BcaC03g13515 Brassica carinata HOM05D005517 ORTHO05D006760 8.8e-15 83.2 74 59.5
Oeu063019.1 Olea europaea HOM05D005517 ORTHO05D006760 8.8e-15 83.2 74 63.5
Aqoxy1G01489 Aquilegia oxysepala HOM05D005517 ORTHO05D006760 1.1e-14 82.8 78 61.5
CDE08G1355 Ceratophyllum demersum HOM05D005517 ORTHO05D006760 1.5e-14 82.4 73 60.3
Duzib147G1371 Durio zibethinus HOM05D005517 ORTHO05D006760 1.5e-14 82.4 71 63.4
Psat6g022360 Pisum sativum HOM05D005517 ORTHO05D006760 1.5e-14 82.4 77 63.6
Solyc04g009570.3 Solanum lycopersicum HOM05D005517 ORTHO05D006760 1.5e-14 82.4 74 64.9
CiPaw.04G038900 Carya illinoinensis HOM05D005517 ORTHO05D006760 2.0e-14 82.0 69 66.7
Lsat_1_v5_gn_4_78980 Lactuca sativa HOM05D005517 ORTHO05D006760 2.0e-14 82.0 64 68.8
QL10p050767 Quercus lobata HOM05D005517 ORTHO05D006760 2.0e-14 82.0 58 74.1
Sopen02g038880 Solanum pennellii HOM05D005517 ORTHO05D006760 2.0e-14 82.0 72 61.1
PGSC0003DMG402020250 Solanum tuberosum HOM05D005517 ORTHO05D006760 2.0e-14 82.0 72 61.1
Nn3g16415 Nelumbo nucifera HOM05D005517 ORTHO05D006760 2.6e-14 81.6 76 60.5
vmacro22457 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 2.6e-14 81.6 74 63.5
Gohir.D04G075800 Gossypium hirsutum HOM05D005517 ORTHO05D006760 3.3e-14 81.3 69 62.3
QL02p071008 Quercus lobata HOM05D005517 ORTHO05D006760 3.3e-14 81.3 69 63.8
Zm00001eb293020 Zea mays HOM05D005517 ORTHO05D006760 3.3e-14 81.3 79 60.8
C02p06560 Brassica napus HOM05D005517 ORTHO05D006760 5.7e-14 80.5 74 59.5
Os05g0517800 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 7.4e-14 80.1 78 57.7
Peaxi162Scf00420g00633 Petunia axillaris HOM05D005517 ORTHO05D006760 7.4e-14 80.1 74 58.1
EL10Ac7g18130 Beta vulgaris HOM05D005517 ORTHO05D006760 9.7e-14 79.7 74 60.8
SEGI_12962 Sequoiadendron giganteum HOM05D005517 ORTHO05D006760 1.3e-13 79.3 78 56.4
CSS0038475 Camellia sinensis var. sinensis HOM05D005517 ORTHO05D006760 1.7e-13 79.0 74 60.8
Rhsim10G0005200 Rhododendron simsii HOM05D005517 ORTHO05D006760 2.2e-13 78.6 73 61.6
AUR62000640 Chenopodium quinoa HOM05D005517 ORTHO05D006760 3.7e-13 77.8 68 60.3
AUR62006995 Chenopodium quinoa HOM05D005517 ORTHO05D006760 3.7e-13 77.8 68 60.3
Rhsim08G0041900 Rhododendron simsii HOM05D005517 ORTHO05D006760 3.7e-13 77.8 72 61.1
Hund05668 Selenicereus undatus HOM05D005517 ORTHO05D006760 6.3e-13 77.0 78 57.7
BcaC03g13513 Brassica carinata HOM05D005517 ORTHO05D006760 1.1e-12 76.3 72 55.6
Phvul.009G125500 Phaseolus vulgaris HOM05D005517 ORTHO05D006760 1.1e-12 76.3 53 69.8
Hund07167 Selenicereus undatus HOM05D005517 ORTHO05D006760 1.8e-12 75.5 68 58.8
Haze_14891 Corylus avellana HOM05D005517 ORTHO05D006760 4.1e-12 74.3 51 74.5
TWI34G0084 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 4.1e-12 74.3 74 55.4
TWI34G1158 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 4.1e-12 74.3 74 55.4
TWI60G0382 Tripterygium wilfordii HOM05D005517 ORTHO05D006760 4.1e-12 74.3 67 59.7
EL10Ac4g09777 Beta vulgaris HOM05D005517 ORTHO05D006760 5.3e-12 73.9 74 55.4
THA.LOC104814182 Tarenaya hassleriana HOM05D005517 ORTHO05D006760 5.3e-12 73.9 46 76.1
Sabra16G0209900 Salix brachista HOM05D005517 ORTHO05D006760 1.2e-11 72.8 57 64.9
arahy.Tifrunner.gnm1.ann1.9JMW1H Arachis hypogaea HOM05D005517 ORTHO05D006760 2.6e-11 71.6 50 70.0
AagrBONN_evm.TU.Sc2ySwM_228.2988 Anthoceros agrestis HOM05D005517 ORTHO05D006760 2.2e-10 68.6 76 53.9
Mapoly0055s0070 Marchantia polymorpha HOM05D005517 ORTHO05D006760 2.9e-10 68.2 76 50.0
Os03g0733000 Oryza sativa ssp. japonica HOM05D005517 ORTHO05D006760 2.9e-10 68.2 72 51.4
Peaxi162Scf00064g01122 Petunia axillaris HOM05D005517 ORTHO05D006760 8.5e-10 66.6 46 65.2
TPR.G36037 Trifolium pratense HOM05D005517 ORTHO05D006760 1.1e-09 66.2 46 65.2
vmacro05969 Vaccinium macrocarpon HOM05D005517 ORTHO05D006760 7.2e-09 63.5 52 63.5
Pp3c1_33450 Physcomitrium patens HOM05D005517 ORTHO05D006760 4.7e-08 60.8 74 47.3
Cc02_g28320 Coffea canephora HOM05D005517 ORTHO05D006760 8.0e-08 60.1 58 56.9
Pp3c14_7680 Physcomitrium patens HOM05D005517 ORTHO05D006760 1.4e-07 59.3 45 62.2
Sed0001513 Sechium edule HOM05D005517 ORTHO05D006760 2.6e-06 55.1 34 79.4


User provided reference genes

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