Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1125300 Malus domestica HOM05D000735 ORTHO05D004669 1.7e-24 115.2 56 100.0
MD10G1342600 Malus domestica HOM05D000735 ORTHO05D004669 1.0e-18 95.9 49 95.9
Prupe.4G000200 Prunus persica HOM05D000735 ORTHO05D004669 1.0e-18 95.9 49 95.9
Manes.10G068400 Manihot esculenta HOM05D000735 ORTHO05D004669 2.3e-18 94.7 49 93.9
Potri.016G000200 Populus trichocarpa HOM05D000735 ORTHO05D004669 2.3e-18 94.7 49 93.9
DCAR_022843 Daucus carota HOM05D000735 ORTHO05D004669 5.2e-18 93.6 49 91.8
PGR042G3067 Punica granatum HOM05D000735 ORTHO05D004669 5.2e-18 93.6 49 91.8
FvH4_3g00030 Fragaria vesca HOM05D000735 ORTHO05D004669 6.8e-18 93.2 49 91.8
FAN25G1440 Fragaria x ananassa HOM05D000735 ORTHO05D004669 6.8e-18 93.2 49 91.8
RcHm_v2.0_Chr5g0000031 Rosa chinensis HOM05D000735 ORTHO05D004669 6.8e-18 93.2 49 91.8
unitig_26.g10052 Utricularia gibba HOM05D000735 ORTHO05D004669 6.8e-18 93.2 49 91.8
GSVIVG01019361001 Vitis vinifera HOM05D000735 ORTHO05D004669 6.8e-18 93.2 49 91.8
Actinidia01459 Actinidia chinensis HOM05D000735 ORTHO05D004669 1.5e-17 92.0 49 89.8
CSS0035227 Camellia sinensis var. sinensis HOM05D000735 ORTHO05D004669 1.5e-17 92.0 49 89.8
CiPaw.10G085400 Carya illinoinensis HOM05D000735 ORTHO05D004669 1.5e-17 92.0 49 89.8
Lj2A254G92 Lonicera japonica HOM05D000735 ORTHO05D004669 1.5e-17 92.0 49 89.8
Nn1g08298 Nelumbo nucifera HOM05D000735 ORTHO05D004669 1.5e-17 92.0 49 89.8
Oeu025986.1 Olea europaea HOM05D000735 ORTHO05D004669 1.5e-17 92.0 49 89.8
A07p27040 Brassica napus HOM05D000290 ORTHO05D006513 2.0e-17 91.7 49 91.8
C06p29770 Brassica napus HOM05D000290 ORTHO05D006513 2.0e-17 91.7 49 91.8
BolC6t38138H Brassica oleracea HOM05D000290 ORTHO05D006513 2.0e-17 91.7 49 91.8
BraA07t30348Z Brassica rapa HOM05D000290 ORTHO05D006513 2.0e-17 91.7 49 91.8
COL.COLO4_31970 Corchorus olitorius HOM05D000735 ORTHO05D004669 2.0e-17 91.7 49 87.8
Duzib192G0339 Durio zibethinus HOM05D000735 ORTHO05D004669 2.0e-17 91.7 49 89.8
Lsat_1_v5_gn_4_64520 Lactuca sativa HOM05D000735 ORTHO05D004669 2.0e-17 91.7 49 89.8
Rhsim13G0137400 Rhododendron simsii HOM05D000735 ORTHO05D004669 2.0e-17 91.7 49 87.8
Thecc.06G244900 Theobroma cacao HOM05D000735 ORTHO05D004669 2.0e-17 91.7 49 89.8
vmacro03581 Vaccinium macrocarpon HOM05D000735 ORTHO05D004669 2.0e-17 91.7 49 87.8
Zm00001eb308990 Zea mays HOM05D000735 ORTHO05D004669 2.0e-17 91.7 49 87.8
AL2G40300 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
AT1G79610 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
BcaC08g47521 Brassica carinata HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
A07p44630 Brassica napus HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
C06p53470 Brassica napus HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
BolC6t40362H Brassica oleracea HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
BraA07t31972Z Brassica rapa HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
Carub.0002s2649 Capsella rubella HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
CARHR073340 Cardamine hirsuta HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
Haze_07068 Corylus avellana HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
FAN21G4060 Fragaria x ananassa HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
Gohir.A06G181100 Gossypium hirsutum HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 87.8
Gohir.D06G187900 Gossypium hirsutum HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 87.8
Gorai.010G220200 Gossypium raimondii HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 87.8
Sp5g34680 Schrenkiella parvula HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
THA.LOC104813594 Tarenaya hassleriana HOM05D000735 ORTHO05D004669 3.4e-17 90.9 49 89.8
Aqoxy1G01335 Aquilegia oxysepala HOM05D000735 ORTHO05D004669 4.4e-17 90.5 49 87.8
ECA247G3031 Erigeron canadensis HOM05D000735 ORTHO05D004669 4.4e-17 90.5 49 87.8
Migut.M01487 Erythranthe guttata HOM05D000735 ORTHO05D004669 4.4e-17 90.5 49 87.8
Thhalv10018385m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 4.4e-17 90.5 49 89.8
HanXRQChr16g0515311 Helianthus annuus HOM05D000735 ORTHO05D004669 4.4e-17 90.5 49 87.8
MD00G1208600 Malus domestica HOM05D000735 ORTHO05D004669 4.4e-17 90.5 47 93.6
PSO541G3261 Papaver somniferum HOM05D000735 ORTHO05D004669 4.4e-17 90.5 49 87.8
PSO675G6844 Papaver somniferum HOM05D000735 ORTHO05D004669 4.4e-17 90.5 49 87.8
Gohir.A01G036500 Gossypium hirsutum HOM05D000735 ORTHO05D004669 7.5e-17 89.7 49 87.8
Gohir.D01G023800 Gossypium hirsutum HOM05D000735 ORTHO05D004669 7.5e-17 89.7 49 87.8
Gorai.002G032300 Gossypium raimondii HOM05D000735 ORTHO05D004669 7.5e-17 89.7 49 87.8
HPP92_003015 Vanilla planifolia HOM05D000735 ORTHO05D004669 7.5e-17 89.7 49 87.8
HPP92_027541 Vanilla planifolia HOM05D000735 ORTHO05D004669 7.5e-17 89.7 49 87.8
Os09g0286400 Oryza sativa ssp. japonica HOM05D000735 ORTHO05D004669 9.8e-17 89.4 49 85.7
SalBow8G3892 Salvia bowleyana HOM05D000735 ORTHO05D004669 9.8e-17 89.4 49 85.7
TWI63G0350 Tripterygium wilfordii HOM05D000735 ORTHO05D004669 9.8e-17 89.4 49 85.7
Ciclev10018215m.g Citrus clementina HOM05D000735 ORTHO05D004669 1.7e-16 88.6 49 87.8
Cc09_g00020 Coffea canephora HOM05D000735 ORTHO05D004669 1.7e-16 88.6 49 87.8
QL05p065759 Quercus lobata HOM05D000735 ORTHO05D004669 1.7e-16 88.6 49 85.7
Peaxi162Scf00529g00815 Petunia axillaris HOM05D000735 ORTHO05D004669 2.2e-16 88.2 49 87.8
Aa31LG4G1360 Aethionema arabicum HOM05D000735 ORTHO05D004669 3.7e-16 87.4 49 85.7
ClCG01G011310 Citrullus lanatus HOM05D000735 ORTHO05D004669 3.7e-16 87.4 49 83.7
CsaV3_1G015620 Cucumis sativus L. HOM05D000735 ORTHO05D004669 3.7e-16 87.4 49 83.7
AL1G64590 Arabidopsis lyrata HOM05D000735 ORTHO05D004669 4.9e-16 87.0 49 87.8
AT1G54370 Arabidopsis thaliana HOM05D000735 ORTHO05D004669 4.9e-16 87.0 49 87.8
Carub.0001s4478 Capsella rubella HOM05D000735 ORTHO05D004669 4.9e-16 87.0 49 87.8
CDE06G1452 Ceratophyllum demersum HOM05D000735 ORTHO05D004669 4.9e-16 87.0 49 83.7
Glyma.09G018200 Glycine max HOM05D000735 ORTHO05D004669 4.9e-16 87.0 49 85.7
Glyma.15G124100 Glycine max HOM05D000735 ORTHO05D004669 4.9e-16 87.0 49 85.7
Lalb_Chr20g0119781 Lupinus albus HOM05D000735 ORTHO05D004669 4.9e-16 87.0 49 85.7
ATR0568G110 Amborella trichopoda HOM05D000735 ORTHO05D004669 6.4e-16 86.7 49 85.7
MSTRG.7102 Avicennia marina HOM05D000735 ORTHO05D004669 6.4e-16 86.7 49 85.7
Ca_00788_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 6.4e-16 86.7 49 85.7
Ca_11371_v3 Cicer arietinum L. HOM05D000735 ORTHO05D004669 6.4e-16 86.7 49 85.7
Lj6g0025657 Lotus japonicus HOM05D000735 ORTHO05D004669 6.4e-16 86.7 49 85.7
Ah.01g012230 Amaranthus hybridus HOM05D000735 ORTHO05D004669 8.3e-16 86.3 49 83.7
EL10Ac9g22942 Beta vulgaris HOM05D000735 ORTHO05D004669 8.3e-16 86.3 49 83.7
AUR62015223 Chenopodium quinoa HOM05D000735 ORTHO05D004669 8.3e-16 86.3 49 83.7
AUR62017691 Chenopodium quinoa HOM05D000735 ORTHO05D004669 8.3e-16 86.3 49 83.7
Glyma.07G270400 Glycine max HOM05D000735 ORTHO05D004669 8.3e-16 86.3 49 85.7
Lalb_Chr18g0057591 Lupinus albus HOM05D000735 ORTHO05D004669 8.3e-16 86.3 49 83.7
Medtr2g028230 Medicago truncatula HOM05D000735 ORTHO05D004669 8.3e-16 86.3 49 83.7
Solyc04g056600.4 Solanum lycopersicum HOM05D000735 ORTHO05D004669 8.3e-16 86.3 49 85.7
Sopen04g025520 Solanum pennellii HOM05D000735 ORTHO05D004669 8.3e-16 86.3 49 85.7
CAN.G642.3 Capsicum annuum HOM05D000735 ORTHO05D004669 1.1e-15 85.9 49 85.7
Thhalv10011392m.g Eutrema salsugineum HOM05D000735 ORTHO05D004669 1.1e-15 85.9 49 85.7
Hma1.2p1_0394F.1_g143380 Hydrangea macrophylla HOM05D000735 ORTHO05D004669 1.1e-15 85.9 49 85.7
Phvul.003G089800 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.1e-15 85.9 49 85.7
Sp1g41910 Schrenkiella parvula HOM05D000735 ORTHO05D004669 1.1e-15 85.9 49 85.7
Sed0022776 Sechium edule HOM05D000735 ORTHO05D004669 1.1e-15 85.9 49 83.7
arahy.Tifrunner.gnm1.ann1.3U55TZ Arachis hypogaea HOM05D000735 ORTHO05D004669 1.9e-15 85.1 49 85.7
arahy.Tifrunner.gnm1.ann1.JCJT2N Arachis hypogaea HOM05D000735 ORTHO05D004669 1.9e-15 85.1 49 83.7
arahy.Tifrunner.gnm1.ann1.MYF06S Arachis hypogaea HOM05D000735 ORTHO05D004669 1.9e-15 85.1 49 83.7
Phvul.006G134033 Phaseolus vulgaris HOM05D000735 ORTHO05D004669 1.9e-15 85.1 49 83.7
Sc25g0001880 Simmondsia chinensis HOM05D000735 ORTHO05D004669 1.9e-15 85.1 49 81.6
VMungo0540G1324 Vigna mungo HOM05D000735 ORTHO05D004669 1.9e-15 85.1 49 83.7
Atru.chr1.2250_Atru.chr1.2251 Acer truncatum HOM05D000735 ORTHO05D004669 2.4e-15 84.7 49 83.7
TPR.G10488 Trifolium pratense HOM05D000735 ORTHO05D004669 2.4e-15 84.7 49 81.6
Psat1g172120 Pisum sativum HOM05D000735 ORTHO05D004669 4.1e-15 84.0 49 81.6
SHI24427 Sapria himalayana HOM05D000735 ORTHO05D004669 5.4e-15 83.6 49 87.8
Mapoly0001s0256 Marchantia polymorpha HOM05D000735 ORTHO05D004669 9.2e-15 82.8 49 79.6
AagrBONN_evm.TU.Sc2ySwM_228.2563 Anthoceros agrestis HOM05D000735 ORTHO05D004669 1.0e-13 79.3 49 77.6
Pp3c13_14340 Physcomitrium patens HOM05D000735 ORTHO05D004669 5.0e-13 77.0 49 75.5
Zm00001eb316390 Zea mays HOM05D000735 ORTHO05D004669 1.5e-12 75.5 49 73.5
SMO367G0875 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 9.5e-12 72.8 49 69.4
CBR_g4710 Chara braunii HOM05D000019 ORTHO05D000002 3.7e-08 60.8 50 56.0
Eucgr.E04240 Eucalyptus grandis HOM05D000735 ORTHO05D004669 3.2e-07 57.8 33 87.9
CBR_g54785 Chara braunii HOM05D000735 ORTHO05D004669 9.2e-07 56.2 50 50.0
Hund24367 Selenicereus undatus HOM05D000735 ORTHO05D004669 1.6e-06 55.5 34 82.4
TAR365G0400 Trochodendron aralioides HOM05D000735 ORTHO05D004669 1.6e-06 55.5 32 84.4
Nitab4.5_0000083g0040 Nicotiana tabacum HOM05D000735 ORTHO05D004669 2.7e-06 54.7 32 87.5
Nitab4.5_0000276g0160 Nicotiana tabacum HOM05D000735 ORTHO05D004669 2.7e-06 54.7 32 87.5
arahy.Tifrunner.gnm1.ann1.LC1B8P Arachis hypogaea HOM05D000735 ORTHO05D004669 4.6e-06 53.9 32 87.5
SMO364G0202 Selaginella moellendorffii HOM05D000735 ORTHO05D004669 7.8e-06 53.1 50 50.0


User provided reference genes

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