Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1123400 Malus domestica HOM05D007275 ORTHO05D009279 2.7e-46 188.3 96 100.0
MD06G1104700 Malus domestica HOM05D007275 ORTHO05D009279 2.8e-43 178.3 96 94.8
Prupe.5G117300 Prunus persica HOM05D007275 ORTHO05D009279 9.8e-41 169.9 96 89.6
Dinv38844 Davidia involucrata HOM05D007275 ORTHO05D009279 4.5e-38 161.0 96 83.3
RcHm_v2.0_Chr7g0195121 Rosa chinensis HOM05D007275 ORTHO05D009279 5.9e-38 160.6 96 83.3
QL02p030913 Quercus lobata HOM05D007275 ORTHO05D009279 7.8e-38 160.2 95 84.2
Actinidia22145 Actinidia chinensis HOM05D007275 ORTHO05D009279 3.9e-37 157.9 96 82.3
Cc08_g15930 Coffea canephora HOM05D007275 ORTHO05D009279 3.9e-37 157.9 96 81.2
Hma1.2p1_0359F.1_g135280 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 8.6e-37 156.8 96 80.2
Thecc.03G296000 Theobroma cacao HOM05D007275 ORTHO05D009279 1.9e-36 155.6 96 83.3
CSS0010422 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 4.3e-36 154.5 94 80.9
Ciclev10024283m.g Citrus clementina HOM05D007275 ORTHO05D009279 4.3e-36 154.5 89 84.3
GSVIVG01019513001 Vitis vinifera HOM05D007275 ORTHO05D009279 4.3e-36 154.5 96 80.2
AUR62010827 Chenopodium quinoa HOM05D007275 ORTHO05D009279 5.6e-36 154.1 96 80.2
CiPaw.12G084200 Carya illinoinensis HOM05D007275 ORTHO05D009279 7.3e-36 153.7 96 80.2
SalBow1G0766 Salvia bowleyana HOM05D007275 ORTHO05D009279 7.3e-36 153.7 96 78.1
SalBow1G5261 Salvia bowleyana HOM05D007275 ORTHO05D009279 1.6e-35 152.5 96 77.1
DCAR_005035 Daucus carota HOM05D007275 ORTHO05D009279 2.8e-35 151.8 97 80.4
Gohir.D12G236900 Gossypium hirsutum HOM05D007275 ORTHO05D009279 2.8e-35 151.8 96 80.2
Gorai.008G253500 Gossypium raimondii HOM05D007275 ORTHO05D009279 2.8e-35 151.8 96 80.2
Potri.001G092700 Populus trichocarpa HOM05D007275 ORTHO05D009279 2.8e-35 151.8 94 80.9
EL10Ac5g12903 Beta vulgaris HOM05D007275 ORTHO05D009279 6.1e-35 150.6 96 76.0
CAN.G532.107 Capsicum annuum HOM05D007275 ORTHO05D009279 6.1e-35 150.6 96 77.1
COL.COLO4_10681 Corchorus olitorius HOM05D007275 ORTHO05D009279 6.1e-35 150.6 92 83.7
Haze_08628 Corylus avellana HOM05D007275 ORTHO05D009279 6.1e-35 150.6 90 84.4
Gohir.A12G235700 Gossypium hirsutum HOM05D007275 ORTHO05D009279 6.1e-35 150.6 96 79.2
Peaxi162Scf00074g01033 Petunia axillaris HOM05D007275 ORTHO05D009279 8.0e-35 150.2 91 80.2
Cfa012796 Carpinus fangiana HOM05D007275 ORTHO05D009279 1.0e-34 149.8 90 84.4
Gohir.D11G024100 Gossypium hirsutum HOM05D007275 ORTHO05D009279 1.4e-34 149.4 94 78.7
Gorai.007G025800 Gossypium raimondii HOM05D007275 ORTHO05D009279 1.4e-34 149.4 94 78.7
Oeu038573.1 Olea europaea HOM05D007275 ORTHO05D009279 1.4e-34 149.4 96 76.0
Manes.02G011100 Manihot esculenta HOM05D007275 ORTHO05D009279 1.8e-34 149.1 92 82.6
Nn1g01839 Nelumbo nucifera HOM05D007275 ORTHO05D009279 1.8e-34 149.1 96 78.1
Gohir.A11G024400 Gossypium hirsutum HOM05D007275 ORTHO05D009279 2.3e-34 148.7 94 78.7
Sabra01G0069000 Salix brachista HOM05D007275 ORTHO05D009279 5.2e-34 147.5 94 78.7
CANSAT21G2355 Cannabis sativa HOM05D007275 ORTHO05D009279 6.8e-34 147.1 92 81.5
Hma1.2p1_0229F.1_g097175 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 1.2e-33 146.4 91 79.1
Hma1.2p1_0229F.1_g097200 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 1.2e-33 146.4 91 79.1
Nitab4.5_0010144g0020 Nicotiana tabacum HOM05D007275 ORTHO05D009279 1.2e-33 146.4 96 75.0
Phvul.002G297500 Phaseolus vulgaris HOM05D007275 ORTHO05D009279 1.5e-33 146.0 96 76.0
TAR375G1117 Trochodendron aralioides HOM05D007275 ORTHO05D009279 1.5e-33 146.0 96 77.1
Eucgr.D01727 Eucalyptus grandis HOM05D007275 ORTHO05D009279 2.6e-33 145.2 96 76.0
FAN08G0060 Fragaria x ananassa HOM05D007275 ORTHO05D009279 2.6e-33 145.2 96 75.0
CSS0024458 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 3.4e-33 144.8 96 77.1
Lalb_Chr16g0390621 Lupinus albus HOM05D007275 ORTHO05D009279 3.4e-33 144.8 93 75.3
Peaxi162Scf00117g01123 Petunia axillaris HOM05D007275 ORTHO05D009279 3.4e-33 144.8 96 74.0
Nitab4.5_0000726g0090 Nicotiana tabacum HOM05D007275 ORTHO05D009279 5.8e-33 144.1 93 73.1
Atru.chr9.2015 Acer truncatum HOM05D007275 ORTHO05D009279 7.5e-33 143.7 91 76.9
Nn3g19047 Nelumbo nucifera HOM05D007275 ORTHO05D009279 7.5e-33 143.7 96 74.0
Nitab4.5_0000223g0330 Nicotiana tabacum HOM05D007275 ORTHO05D009279 7.5e-33 143.7 92 76.1
PGSC0003DMG400012158 Solanum tuberosum HOM05D007275 ORTHO05D009279 7.5e-33 143.7 96 72.9
arahy.Tifrunner.gnm1.ann1.IALD8X Arachis hypogaea HOM05D007275 ORTHO05D009279 9.8e-33 143.3 94 72.3
Lj4g0015273 Lotus japonicus HOM05D007275 ORTHO05D009279 9.8e-33 143.3 92 76.1
TAR629G0721 Trochodendron aralioides HOM05D007275 ORTHO05D010861 1.3e-32 142.9 97 76.3
FvH4_5g04420 Fragaria vesca HOM05D007275 ORTHO05D009279 1.7e-32 142.5 97 75.3
FAN18G1142 Fragaria x ananassa HOM05D007275 ORTHO05D009279 1.7e-32 142.5 97 75.3
FAN18G2266 Fragaria x ananassa HOM05D007275 ORTHO05D009279 1.7e-32 142.5 97 75.3
Sabra03G0100000 Salix brachista HOM05D007275 ORTHO05D009279 1.7e-32 142.5 93 74.2
Solyc08g082160.3 Solanum lycopersicum HOM05D007275 ORTHO05D009279 2.2e-32 142.1 96 74.0
Sopen08g030440 Solanum pennellii HOM05D007275 ORTHO05D009279 2.2e-32 142.1 96 74.0
Glyma.05G216300 Glycine max HOM05D007275 ORTHO05D009279 2.9e-32 141.7 92 76.1
Sc01g0010220 Simmondsia chinensis HOM05D007275 ORTHO05D009279 3.7e-32 141.4 96 75.0
TPR.G3422 Trifolium pratense HOM05D007275 ORTHO05D009279 3.7e-32 141.4 96 72.9
Glyma.08G022200 Glycine max HOM05D007275 ORTHO05D009279 4.9e-32 141.0 92 75.0
arahy.Tifrunner.gnm1.ann1.GQP3LI Arachis hypogaea HOM05D007275 ORTHO05D009279 8.3e-32 140.2 94 70.2
Medtr8g099385 Medicago truncatula HOM05D007275 ORTHO05D009279 1.1e-31 139.8 93 73.1
MBI06_g46619_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D009279 1.4e-31 139.4 89 77.5
MBI06_g46730_MAGBIO Magnolia biondii HOM05D007275 ORTHO05D000022 1.4e-31 139.4 89 77.5
PGR031G2423 Punica granatum HOM05D007275 ORTHO05D009279 1.4e-31 139.4 96 71.9
Migut.A00668 Erythranthe guttata HOM05D007275 ORTHO05D009279 2.4e-31 138.7 95 70.5
Dinv37542 Davidia involucrata HOM05D007275 ORTHO05D009279 5.4e-31 137.5 84 81.0
Potri.003G138800 Populus trichocarpa HOM05D007275 ORTHO05D009279 5.4e-31 137.5 93 72.0
FvH4_3g01740 Fragaria vesca HOM05D007275 ORTHO05D009279 4.6e-30 134.4 97 70.1
ClCG07G014960 Citrullus lanatus HOM05D007275 ORTHO05D009279 7.8e-30 133.7 87 73.6
Zm00001eb338790 Zea mays HOM05D007275 ORTHO05D009279 7.8e-30 133.7 97 72.2
ECA246G4125 Erigeron canadensis HOM05D007275 ORTHO05D009279 3.0e-29 131.7 92 66.3
FAN13G1788 Fragaria x ananassa HOM05D007275 ORTHO05D009279 3.0e-29 131.7 125 58.4
HanXRQChr06g0166541 Helianthus annuus HOM05D007275 ORTHO05D009279 3.0e-29 131.7 93 65.6
HanXRQChr17g0535191 Helianthus annuus HOM05D007275 ORTHO05D009279 3.9e-29 131.3 96 63.5
Lsat_1_v5_gn_3_10301 Lactuca sativa HOM05D007275 ORTHO05D009279 1.1e-28 129.8 94 67.0
TWI60G1254 Tripterygium wilfordii HOM05D007275 ORTHO05D009279 2.5e-28 128.6 92 69.6
Aqoxy7G00131 Aquilegia oxysepala HOM05D007275 ORTHO05D009279 4.3e-28 127.9 96 65.6
AUR62019826 Chenopodium quinoa HOM05D007275 ORTHO05D009279 2.1e-27 125.6 75 80.0
MELO3C032816.2 Cucumis melo HOM05D007275 ORTHO05D009279 2.8e-27 125.2 91 68.1
CsaV3_4G006490 Cucumis sativus L. HOM05D007275 ORTHO05D009279 3.6e-27 124.8 91 68.1
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 2.3e-26 122.1 69 82.6
Oeu063532.1 Olea europaea HOM05D007275 ORTHO05D009279 2.3e-26 122.1 84 71.4
unitig_748.g8124 Utricularia gibba HOM05D007275 ORTHO05D009279 1.5e-25 119.4 92 64.1
Sed0004885 Sechium edule HOM05D007275 ORTHO05D009279 7.5e-25 117.1 89 66.3
ATR0320G041 Amborella trichopoda HOM05D007275 ORTHO05D009279 9.8e-25 116.7 91 64.8
CDE10G0124 Ceratophyllum demersum HOM05D007275 ORTHO05D009279 9.8e-25 116.7 82 67.1
BcaC09g50944 Brassica carinata HOM05D007275 ORTHO05D009279 2.9e-24 115.2 94 57.4
A01p15130 Brassica napus HOM05D007275 ORTHO05D009279 2.9e-24 115.2 94 57.4
C01p19030 Brassica napus HOM05D007275 ORTHO05D009279 2.9e-24 115.2 94 57.4
BolC1t01829H Brassica oleracea HOM05D007275 ORTHO05D009279 2.9e-24 115.2 94 57.4
CSS0026606 Camellia sinensis var. sinensis HOM05D007275 ORTHO05D009279 3.7e-24 114.8 68 77.9
Duzib068G1121 Durio zibethinus HOM05D007275 ORTHO05D009279 1.1e-23 113.2 71 84.5
BcaNung01089 Brassica carinata HOM05D007275 ORTHO05D009279 2.4e-23 112.1 94 57.4
BcaNung01088 Brassica carinata HOM05D007275 ORTHO05D009279 3.2e-23 111.7 94 57.4
Nitab4.5_0007661g0010 Nicotiana tabacum HOM05D007275 ORTHO05D009279 3.2e-23 111.7 72 68.1
CDE10G0242 Ceratophyllum demersum HOM05D000974 ORTHO05D002201 5.4e-23 110.9 84 63.1
Hma1.2p1_2596F.1_g325120 Hydrangea macrophylla HOM05D007275 ORTHO05D009279 5.4e-23 110.9 69 79.7
Psat7g026480 Pisum sativum HOM05D007275 ORTHO05D009279 1.2e-22 109.8 92 63.0
SEGI_25349 Sequoiadendron giganteum HOM05D007275 ORTHO05D009279 8.6e-21 103.6 94 53.2
Rhsim02G0242000 Rhododendron simsii HOM05D007275 ORTHO05D009279 2.5e-20 102.1 82 64.6
FAN04G0348 Fragaria x ananassa HOM05D007275 ORTHO05D009279 4.7e-19 97.8 97 57.7
Thhalv10027148m.g Eutrema salsugineum HOM05D007275 ORTHO05D009279 4.6e-14 81.3 67 59.7
Lalb_Chr16g0390631 Lupinus albus HOM05D007275 ORTHO05D009279 2.5e-12 75.5 50 70.0
ECA236G1637 Erigeron canadensis HOM05D000015 ORTHO05D009146 3.5e-06 55.1 91 38.5
Manes.17G027600 Manihot esculenta HOM05D000015 ORTHO05D009146 4.6e-06 54.7 79 40.5


User provided reference genes

Program Settings