Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1123300 Malus domestica HOM05D006525 ORTHO05D007845 1.5e-127 459.5 238 100.0
Prupe.5G117200 Prunus persica HOM05D006525 ORTHO05D007845 8.2e-105 384.0 234 82.1
FAN18G4350 Fragaria x ananassa HOM05D006525 ORTHO05D007845 1.0e-102 377.1 238 79.4
FAN13G2324 Fragaria x ananassa HOM05D006525 ORTHO05D007845 4.2e-101 371.7 238 80.3
RcHm_v2.0_Chr7g0195151 Rosa chinensis HOM05D006525 ORTHO05D007845 1.6e-100 369.8 201 88.1
CANSAT21G0126 Cannabis sativa HOM05D006525 ORTHO05D007845 2.7e-100 369.0 242 76.0
FAN08G2482 Fragaria x ananassa HOM05D000027 ORTHO05D007845 1.4e-99 366.7 237 80.6
QL02p030956 Quercus lobata HOM05D006525 ORTHO05D007845 3.3e-98 362.1 208 84.1
Thecc.03G295800 Theobroma cacao HOM05D006525 ORTHO05D007845 8.2e-97 357.5 240 74.6
Duzib068G0461 Durio zibethinus HOM05D006525 ORTHO05D007845 7.0e-96 354.4 238 72.3
Ciclev10022095m.g Citrus clementina HOM05D006525 ORTHO05D007845 1.2e-95 353.6 235 74.9
Haze_08630 Corylus avellana HOM05D006525 ORTHO05D007845 1.0e-94 350.5 211 79.6
PGR031G0465 Punica granatum HOM05D006525 ORTHO05D007845 2.2e-94 349.4 236 69.9
Cpa.g.sc79.53 Carica papaya HOM05D006525 ORTHO05D007845 3.2e-93 345.5 233 72.5
EL10Ac5g12902 Beta vulgaris HOM05D006525 ORTHO05D007845 2.1e-92 342.8 232 71.1
Cfa022937 Carpinus fangiana HOM05D006525 ORTHO05D007845 2.1e-92 342.8 204 79.9
CiPaw.11G122700 Carya illinoinensis HOM05D006525 ORTHO05D007845 2.7e-92 342.4 205 79.5
Sed0028109 Sechium edule HOM05D006525 ORTHO05D007845 2.7e-92 342.4 229 72.5
Sp7g00260 Schrenkiella parvula HOM05D006525 ORTHO05D007845 2.3e-91 339.3 233 69.1
Medtr8g099380 Medicago truncatula HOM05D006525 ORTHO05D007845 8.8e-91 337.4 237 69.6
Gorai.007G025600 Gossypium raimondii HOM05D006525 ORTHO05D007845 2.0e-90 336.3 234 70.5
Lj4g0012415 Lotus japonicus HOM05D006525 ORTHO05D007845 2.0e-90 336.3 236 68.2
MELO3C005745.2 Cucumis melo HOM05D006525 ORTHO05D007845 3.3e-90 335.5 229 70.7
Dinv37543 Davidia involucrata HOM05D006525 ORTHO05D007845 4.4e-90 335.1 245 69.8
GSVIVG01019512001 Vitis vinifera HOM05D006525 ORTHO05D007845 5.7e-90 334.7 206 75.7
CsaV3_5G002090 Cucumis sativus L. HOM05D006525 ORTHO05D007845 1.3e-89 333.6 229 70.3
Manes.01G047000 Manihot esculenta HOM05D006525 ORTHO05D007845 1.7e-89 333.2 201 79.1
Gohir.D11G024000 Gossypium hirsutum HOM05D006525 ORTHO05D007845 2.2e-89 332.8 234 69.7
Atru.chr9.2016 Acer truncatum HOM05D006525 ORTHO05D007845 4.8e-89 331.6 200 78.5
Potri.001G092800 Populus trichocarpa HOM05D006525 ORTHO05D007845 4.8e-89 331.6 238 68.1
ClCG01G001950 Citrullus lanatus HOM05D006525 ORTHO05D007845 8.2e-89 330.9 231 70.1
THA.LOC104817658 Tarenaya hassleriana HOM05D006525 ORTHO05D007845 1.8e-88 329.7 238 68.5
Psat7g027440 Pisum sativum HOM05D006525 ORTHO05D007845 2.4e-88 329.3 236 67.4
TWI15G0402 Tripterygium wilfordii HOM05D006525 ORTHO05D007845 3.1e-88 328.9 230 71.3
Gohir.A11G024300 Gossypium hirsutum HOM05D006525 ORTHO05D007845 4.1e-88 328.6 234 70.5
Phvul.002G297400 Phaseolus vulgaris HOM05D006525 ORTHO05D007845 4.1e-88 328.6 209 75.6
AUR62019825 Chenopodium quinoa HOM05D006525 ORTHO05D007845 5.3e-88 328.2 230 69.1
Sabra01G0069100 Salix brachista HOM05D006525 ORTHO05D007845 9.1e-88 327.4 238 69.7
Actinidia22144 Actinidia chinensis HOM05D006525 ORTHO05D007845 4.5e-87 325.1 205 76.1
DCAR_027712 Daucus carota HOM05D006525 ORTHO05D007845 4.5e-87 325.1 238 67.2
vmacro11437 Vaccinium macrocarpon HOM05D006525 ORTHO05D007845 5.9e-87 324.7 198 76.3
Ca_17485_v3 Cicer arietinum L. HOM05D006525 ORTHO05D007845 7.7e-87 324.3 236 66.9
CSS0006968 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 1.0e-86 323.9 206 75.2
Hund11396 Selenicereus undatus HOM05D006525 ORTHO05D007845 1.0e-86 323.9 229 70.7
MSTRG.11933 Avicennia marina HOM05D006525 ORTHO05D007845 1.7e-86 323.2 196 75.0
Hma1.2p1_0359F.1_g135310 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 2.2e-86 322.8 196 75.5
BraA07t29782Z Brassica rapa HOM05D006525 ORTHO05D007845 6.5e-86 321.2 228 68.0
Migut.A00669 Erythranthe guttata HOM05D006525 ORTHO05D007845 6.5e-86 321.2 190 78.4
Glyma.08G022100 Glycine max HOM05D006525 ORTHO05D007845 6.5e-86 321.2 236 67.4
SalBow1G4596 Salvia bowleyana HOM05D006525 ORTHO05D007845 6.5e-86 321.2 237 65.8
Aqoxy5G04177 Aquilegia oxysepala HOM05D006525 ORTHO05D007845 1.9e-85 319.7 229 67.7
Rhsim02G0241900 Rhododendron simsii HOM05D006525 ORTHO05D007845 1.9e-85 319.7 197 76.1
SalBow1G2372 Salvia bowleyana HOM05D006525 ORTHO05D007845 1.9e-85 319.7 237 65.4
Cc08_g15920 Coffea canephora HOM05D006525 ORTHO05D007845 3.2e-85 318.9 205 71.7
VMungo0251G1352 Vigna mungo HOM05D006525 ORTHO05D007845 4.2e-85 318.5 197 76.1
C06p20270 Brassica napus HOM05D006525 ORTHO05D007845 5.5e-85 318.2 201 73.6
BolC6t37207H Brassica oleracea HOM05D006525 ORTHO05D007845 5.5e-85 318.2 201 73.6
Os05g0214400 Oryza sativa ssp. japonica HOM05D006525 ORTHO05D007845 7.2e-85 317.8 232 69.8
Aa31LG9G310 Aethionema arabicum HOM05D006525 ORTHO05D007845 9.4e-85 317.4 223 67.3
Sopen08g030430 Solanum pennellii HOM05D006525 ORTHO05D007845 9.4e-85 317.4 196 76.5
Lalb_Chr16g0390611 Lupinus albus HOM05D006525 ORTHO05D007845 1.2e-84 317.0 236 68.2
BcaB02g07875 Brassica carinata HOM05D006525 ORTHO05D007845 3.6e-84 315.5 228 68.0
A07p20960 Brassica napus HOM05D006525 ORTHO05D007845 3.6e-84 315.5 228 66.2
MBI07_g34229_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 6.1e-84 314.7 207 72.0
BcaC08g44560 Brassica carinata HOM05D006525 ORTHO05D007845 2.3e-83 312.8 201 72.6
CAN.G532.106 Capsicum annuum HOM05D006525 ORTHO05D007845 4.0e-83 312.0 202 73.8
PGSC0003DMG400012159 Solanum tuberosum HOM05D006525 ORTHO05D007845 4.0e-83 312.0 196 75.0
arahy.Tifrunner.gnm1.ann1.3UM0RM Arachis hypogaea HOM05D006525 ORTHO05D007845 4.4e-82 308.5 239 65.7
Eucgr.D01725 Eucalyptus grandis HOM05D006525 ORTHO05D007845 4.4e-82 308.5 196 75.5
HPP92_000617 Vanilla planifolia HOM05D006525 ORTHO05D007845 5.7e-82 308.1 235 63.0
TAR636G1454 Trochodendron aralioides HOM05D006525 ORTHO05D007845 9.7e-82 307.4 187 78.1
Nn1g01837 Nelumbo nucifera HOM05D006525 ORTHO05D007845 1.3e-81 307.0 236 65.3
Ah.12g052450 Amaranthus hybridus HOM05D006525 ORTHO05D007845 2.8e-81 305.8 247 62.8
Carub.0007s3351 Capsella rubella HOM05D006525 ORTHO05D007845 3.7e-81 305.4 205 69.8
CARHR212710 Cardamine hirsuta HOM05D006525 ORTHO05D007845 8.2e-81 304.3 204 68.6
AT5G41850 Arabidopsis thaliana HOM05D006525 ORTHO05D007845 1.4e-80 303.5 202 69.3
AL7G47380 Arabidopsis lyrata HOM05D006525 ORTHO05D007845 1.8e-80 303.1 202 69.8
unitig_88.g27636 Utricularia gibba HOM05D006525 ORTHO05D007845 7.0e-80 301.2 198 70.2
Oeu009950.2 Olea europaea HOM05D006525 ORTHO05D007845 1.6e-79 300.1 237 62.4
arahy.Tifrunner.gnm1.ann1.56CREW Arachis hypogaea HOM05D006525 ORTHO05D007845 3.5e-79 298.9 249 63.1
Zm00001eb283820 Zea mays HOM05D006525 ORTHO05D007845 7.2e-77 291.2 223 62.8
MBI07_g34230_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 1.6e-76 290.0 181 74.0
ECA240G1071 Erigeron canadensis HOM05D006525 ORTHO05D007845 3.6e-76 288.9 198 68.7
PSO384G4490 Papaver somniferum HOM05D006525 ORTHO05D007845 4.7e-76 288.5 225 62.2
SGA_v2.0_scaffold96G28973 Striga asiatica HOM05D006525 ORTHO05D007845 2.3e-75 286.2 274 54.7
AUR62010826 Chenopodium quinoa HOM05D006525 ORTHO05D007845 4.0e-75 285.4 232 64.2
HanXRQChr17g0535171 Helianthus annuus HOM05D006525 ORTHO05D007845 4.0e-75 285.4 196 65.8
HanXRQChr13g0415031 Helianthus annuus HOM05D006525 ORTHO05D007845 6.8e-75 284.6 196 67.9
Thhalv10028271m.g Eutrema salsugineum HOM05D006525 ORTHO05D007845 4.4e-74 282.0 226 61.5
ECA246G0134 Erigeron canadensis HOM05D006525 ORTHO05D007845 3.7e-73 278.9 228 58.3
PSO339G1283 Papaver somniferum HOM05D006525 ORTHO05D007845 1.1e-72 277.3 242 59.1
Nitab4.5_0010144g0010 Nicotiana tabacum HOM05D006525 ORTHO05D007845 1.9e-69 266.5 173 72.8
Lsat_1_v5_gn_3_10281 Lactuca sativa HOM05D006525 ORTHO05D007845 4.2e-69 265.4 194 63.9
Nitab4.5_0000223g0360 Nicotiana tabacum HOM05D006525 ORTHO05D007845 1.6e-68 263.5 173 72.8
SMO290G0001 Selaginella moellendorffii HOM05D006525 ORTHO05D007845 2.3e-67 259.6 202 59.9
HanXRQChr06g0166551 Helianthus annuus HOM05D006525 ORTHO05D007845 1.3e-65 253.8 198 61.1
Lj2A170G33 Lonicera japonica HOM05D006525 ORTHO05D007845 1.7e-65 253.4 161 73.9
Lsat_1_v5_gn_6_84361 Lactuca sativa HOM05D006525 ORTHO05D007845 2.4e-64 249.6 178 65.2
Nn3g19049 Nelumbo nucifera HOM05D006525 ORTHO05D007845 1.7e-62 243.4 166 74.7
TPR.G3436 Trifolium pratense HOM05D006525 ORTHO05D007845 4.0e-59 232.3 168 66.1
FvH4_5g04410 Fragaria vesca HOM05D006525 ORTHO05D007845 8.9e-59 231.1 144 79.9
CBR_g29721 Chara braunii HOM05D006525 ORTHO05D007845 7.5e-58 228.0 203 52.2
MBI07_g27263_MAGBIO Magnolia biondii HOM05D006525 ORTHO05D007845 6.2e-52 208.4 182 59.9
Pp3c22_1320 Physcomitrium patens HOM05D006525 ORTHO05D007845 1.4e-48 197.2 140 64.3
Sc22g0005060 Simmondsia chinensis HOM05D006525 ORTHO05D007845 4.6e-47 192.2 114 80.7
CSS0025848 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 7.8e-47 191.4 110 83.6
Glyma.05G216200 Glycine max HOM05D006525 ORTHO05D007845 8.1e-44 181.4 113 73.5
MD06G1104500 Malus domestica HOM05D006525 ORTHO05D007845 2.0e-42 176.8 119 76.5
Hma1.2p1_0359F.1_g135320 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 8.3e-41 171.4 110 70.0
Solyc08g082150.2 Solanum lycopersicum HOM05D006525 ORTHO05D007845 2.5e-37 159.8 87 85.1
Hma1.2p1_0359F.1_g135300 Hydrangea macrophylla HOM05D006525 ORTHO05D007845 9.5e-37 157.9 87 82.8
SEGI_26681 Sequoiadendron giganteum HOM05D006525 ORTHO05D007845 2.3e-30 136.7 91 73.6
CSS0015265 Camellia sinensis var. sinensis HOM05D006525 ORTHO05D007845 3.0e-30 136.3 94 67.0
Peaxi162Scf00074g01026 Petunia axillaris HOM05D006525 ORTHO05D007845 5.6e-29 132.1 123 60.2
BcaNung06853 Brassica carinata HOM05D006525 ORTHO05D007845 1.2e-28 131.0 83 75.9
TPR.G20444 Trifolium pratense HOM05D006525 ORTHO05D007845 8.1e-28 128.3 85 72.9
ATR0589G090 Amborella trichopoda HOM05D006525 ORTHO05D007845 3.4e-26 122.9 85 67.1
MD06G1104600 Malus domestica HOM05D006525 ORTHO05D007845 9.9e-26 121.3 70 84.3
Pp3c22_17300 Physcomitrium patens HOM05D006525 ORTHO05D007845 2.1e-23 113.6 86 60.5
AagrBONN_evm.TU.Sc2ySwM_368.643 Anthoceros agrestis HOM05D006525 ORTHO05D007845 2.3e-22 110.2 79 59.5
HanXRQChr03g0061741 Helianthus annuus HOM05D006525 ORTHO05D007845 1.5e-18 97.4 65 66.2
Sc22g0005070 Simmondsia chinensis HOM05D006525 ORTHO05D007845 1.2e-15 87.8 65 60.0
PGSC0003DMG400026824 Solanum tuberosum HOM05D006525 ORTHO05D007845 1.2e-15 87.8 65 61.5
Lalb_Chr09g0332581 Lupinus albus HOM05D006525 ORTHO05D007845 1.4e-11 74.3 50 70.0


User provided reference genes

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