Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.8e-276 955.3 469 100.0
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 7.5e-211 737.3 435 85.1
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 5.4e-209 731.1 454 80.2
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.7e-200 702.2 435 80.0
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 7.8e-200 700.7 435 80.0
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 8.6e-199 697.2 435 79.1
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 9.5e-198 693.7 435 78.9
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 3.1e-196 688.7 443 77.7
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.1e-192 676.0 439 77.2
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-179 633.3 435 73.1
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.5e-179 633.3 435 73.1
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 8.4e-178 627.5 437 71.2
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 2.8e-173 612.5 428 71.3
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 6.2e-173 611.3 425 70.8
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 3.4e-171 605.5 437 68.4
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 7.6e-171 604.4 449 67.3
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 9.9e-171 604.0 439 68.8
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.7e-170 603.2 439 68.6
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 3.8e-170 602.1 439 68.3
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 6.4e-170 601.3 423 70.0
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.1e-168 596.3 424 70.3
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 6.0e-168 594.7 429 69.9
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.8e-167 593.2 426 69.2
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.3e-167 592.8 426 69.5
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.5e-166 590.1 453 65.6
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 1.5e-166 590.1 424 68.9
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 1.9e-166 589.7 460 64.3
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 3.3e-166 589.0 447 65.8
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 3.3e-166 589.0 434 66.6
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 5.6e-166 588.2 424 69.1
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 4.8e-165 585.1 454 65.6
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.1e-164 583.9 438 66.2
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 1.4e-164 583.6 459 64.7
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 1.8e-164 583.2 447 65.5
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 2.4e-164 582.8 428 66.4
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 3.1e-164 582.4 460 64.1
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 6.9e-164 581.3 460 64.1
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 9.0e-164 580.9 426 67.4
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.2e-163 580.5 437 67.7
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 1.2e-163 580.5 424 68.9
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.5e-163 580.1 437 67.0
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.0e-163 579.7 460 63.0
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 4.5e-163 578.6 461 64.6
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 1.3e-162 577.0 433 66.7
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 6.4e-162 574.7 439 67.7
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 8.4e-162 574.3 426 66.0
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 4.2e-161 572.0 458 63.1
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 9.3e-161 570.9 442 64.9
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 9.3e-161 570.9 459 63.0
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 1.2e-160 570.5 451 63.4
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 2.7e-160 569.3 433 66.3
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 6.0e-160 568.2 460 62.6
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 1.0e-159 567.4 427 65.1
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 3.0e-159 565.8 424 67.2
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 3.0e-159 565.8 427 65.1
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 1.9e-158 563.1 433 64.9
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.5e-158 562.8 424 66.7
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 7.4e-158 561.2 449 62.6
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 2.1e-157 559.7 458 62.7
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 2.8e-157 559.3 435 65.5
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 3.7e-157 558.9 447 63.3
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 3.7e-157 558.9 426 65.0
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 6.2e-157 558.1 447 64.0
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 1.1e-156 557.4 450 62.2
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 5.3e-156 555.1 433 64.9
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 5.3e-156 555.1 447 62.9
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 5.8e-155 551.6 437 64.1
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 5.8e-155 551.6 447 63.8
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 6.5e-154 548.1 424 63.9
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 8.4e-154 547.7 424 63.7
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 1.4e-153 547.0 424 63.7
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.9e-153 546.6 424 63.4
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 1.9e-153 546.6 424 63.4
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.9e-153 546.6 471 61.1
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 4.2e-153 545.4 424 63.4
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 4.2e-153 545.4 424 63.4
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 7.1e-153 544.7 426 64.1
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 1.0e-151 540.8 424 63.9
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.3e-151 540.4 424 63.4
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 3.9e-151 538.9 452 60.4
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 5.1e-151 538.5 424 62.7
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 8.7e-151 537.7 449 61.7
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 1.1e-150 537.3 424 63.4
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.9e-150 536.6 427 65.1
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 3.3e-150 535.8 424 64.6
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.2e-149 533.1 424 62.3
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.7e-149 532.3 447 60.2
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 5.3e-148 528.5 479 57.6
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.0e-147 526.6 449 61.7
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 3.8e-146 522.3 516 54.1
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 2.5e-145 519.6 424 60.6
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.0e-143 514.2 430 61.6
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 6.7e-143 511.5 422 62.8
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 6.7e-143 511.5 449 59.5
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.1e-142 510.8 430 61.4
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 1.5e-142 510.4 355 71.3
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 1.7e-141 506.9 431 60.3
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 3.1e-140 502.7 436 58.5
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 7.2e-137 491.5 450 56.7
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 1.0e-135 487.6 390 62.3
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.0e-135 487.6 455 55.8
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 3.9e-135 485.7 444 56.3
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 5.1e-135 485.3 468 56.8
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.2e-133 479.9 353 68.0
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.6e-128 463.8 383 61.6
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 1.1e-126 457.6 410 56.8
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 4.4e-126 455.7 439 55.4
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 9.7e-126 454.5 404 59.4
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.7e-120 436.4 454 50.7
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.4e-110 402.9 424 50.9
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 9.8e-110 401.4 307 63.8
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.3e-106 391.0 376 55.6
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 2.8e-104 383.3 386 56.2
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.2e-96 357.8 453 43.7
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.7e-93 346.3 449 43.9
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 5.4e-92 342.4 296 59.8
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 2.7e-91 340.1 432 45.6
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 2.3e-90 337.0 425 45.2
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-87 327.8 310 58.1
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 3.2e-60 236.9 437 35.2
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 4.3e-57 226.5 450 32.7
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 2.1e-56 224.2 297 46.5
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 7.6e-54 215.7 165 64.2
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 9.9e-54 215.3 360 39.2
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 3.2e-44 183.7 137 63.5
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 7.9e-43 179.1 370 31.9
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.4e-39 167.5 163 57.1
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 2.0e-38 164.5 425 29.6
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 1.6e-35 154.8 243 38.3
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 9.1e-23 112.5 205 34.1
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.8e-18 98.2 98 56.1
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 6.7e-18 96.3 254 28.0
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.7e-16 90.5 59 71.2
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.5e-12 78.6 62 62.9
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 6.1e-11 73.2 44 70.5


User provided reference genes

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