Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1093400 Malus domestica HOM05D000223 ORTHO05D016846 1.9e-36 155.2 74 100.0
MD12G1099600 Malus domestica HOM05D000223 ORTHO05D008670 3.5e-14 81.3 78 61.5
Prupe.7G035700 Prunus persica HOM05D000223 ORTHO05D008670 8.7e-13 76.6 63 68.3
QL07p013384 Quercus lobata HOM05D000223 ORTHO05D008670 1.1e-12 76.3 78 57.7
Manes.08G063732 Manihot esculenta HOM05D000223 ORTHO05D008670 2.5e-12 75.1 63 66.7
FvH4_2g18940 Fragaria vesca HOM05D000223 ORTHO05D008670 3.3e-12 74.7 63 65.1
FAN15G2663 Fragaria x ananassa HOM05D000223 ORTHO05D008670 3.3e-12 74.7 63 65.1
FAN24G3139 Fragaria x ananassa HOM05D000223 ORTHO05D008670 3.3e-12 74.7 63 65.1
Potri.016G030800 Populus trichocarpa HOM05D000223 ORTHO05D008670 9.6e-12 73.2 63 63.5
Lalb_Chr21g0316801 Lupinus albus HOM05D000223 ORTHO05D008670 1.6e-11 72.4 76 55.3
PGR142G0562 Punica granatum HOM05D000223 ORTHO05D008670 1.6e-11 72.4 78 53.8
Sabra16G0034100 Salix brachista HOM05D000494 ORTHO05D008670 1.6e-11 72.4 63 61.9
COL.COLO4_19401 Corchorus olitorius HOM05D000223 ORTHO05D008670 2.1e-11 72.0 78 55.1
Eucgr.K01673 Eucalyptus grandis HOM05D000223 ORTHO05D008670 2.1e-11 72.0 78 53.8
Eucgr.L02445 Eucalyptus grandis HOM05D000223 ORTHO05D008670 2.1e-11 72.0 78 53.8
CANSAT35G0549 Cannabis sativa HOM05D000223 ORTHO05D008670 2.8e-11 71.6 78 51.3
RcHm_v2.0_Chr6g0284731 Rosa chinensis HOM05D000223 ORTHO05D008670 2.8e-11 71.6 63 63.5
CiPaw.10G043700 Carya illinoinensis HOM05D000223 ORTHO05D008670 4.8e-11 70.9 78 53.8
RhsimUnG0209300 Rhododendron simsii HOM05D000494 ORTHO05D008670 4.8e-11 70.9 78 53.8
vmacro07765 Vaccinium macrocarpon HOM05D000088 ORTHO05D008670 6.2e-11 70.5 78 53.8
Thecc.05G122400 Theobroma cacao HOM05D000223 ORTHO05D008670 1.4e-10 69.3 63 61.9
Ciclev10011248m.g Citrus clementina HOM05D000223 ORTHO05D008670 1.8e-10 68.9 63 61.9
Glyma.02G162300 Glycine max HOM05D000223 ORTHO05D008670 1.8e-10 68.9 78 52.6
Lj5g0002002 Lotus japonicus HOM05D000223 ORTHO05D008670 2.4e-10 68.6 71 56.3
CSS0040284 Camellia sinensis var. sinensis HOM05D000223 ORTHO05D008670 3.1e-10 68.2 63 60.3
Cpa.g.sc37.35 Carica papaya HOM05D000223 ORTHO05D008670 4.0e-10 67.8 63 61.9
MELO3C009743.2 Cucumis melo HOM05D000223 ORTHO05D008670 5.3e-10 67.4 63 60.3
Dinv00874 Davidia involucrata HOM05D000223 ORTHO05D016846 5.3e-10 67.4 78 52.6
Dinv30090 Davidia involucrata HOM05D000223 ORTHO05D008670 5.3e-10 67.4 78 52.6
HanXRQChr10g0298501 Helianthus annuus HOM05D000223 ORTHO05D008670 5.3e-10 67.4 63 57.1
AUR62018399 Chenopodium quinoa HOM05D000223 ORTHO05D008670 6.9e-10 67.0 63 57.1
TAR633G0654 Trochodendron aralioides HOM05D000223 ORTHO05D008670 6.9e-10 67.0 78 50.0
BcaB01g03508 Brassica carinata HOM05D000223 ORTHO05D008670 9.0e-10 66.6 78 48.7
Duzib128G1945 Durio zibethinus HOM05D000223 ORTHO05D008670 9.0e-10 66.6 63 57.1
VMungo0720G1770 Vigna mungo HOM05D000223 ORTHO05D008670 9.0e-10 66.6 78 50.0
EL10Ac3g07290 Beta vulgaris HOM05D000223 ORTHO05D008670 1.2e-09 66.2 78 48.7
CsaV3_3G040010 Cucumis sativus L. HOM05D000223 ORTHO05D008670 1.2e-09 66.2 63 58.7
Nn7g36998 Nelumbo nucifera HOM05D000223 ORTHO05D008670 1.2e-09 66.2 63 58.7
PSO384G3882 Papaver somniferum HOM05D000223 ORTHO05D008670 1.2e-09 66.2 78 50.0
Gohir.D13G000200 Gossypium hirsutum HOM05D000223 ORTHO05D008670 1.5e-09 65.9 71 54.9
Gorai.013G001000 Gossypium raimondii HOM05D000223 ORTHO05D008670 1.5e-09 65.9 71 54.9
RhsimUnG0018900 Rhododendron simsii HOM05D000494 ORTHO05D008670 1.5e-09 65.9 74 52.7
Atru.chr1.1351 Acer truncatum HOM05D000223 ORTHO05D008670 2.6e-09 65.1 63 57.1
Aqoxy1G00057 Aquilegia oxysepala HOM05D000223 ORTHO05D008670 2.6e-09 65.1 63 58.7
AL4G38810 Arabidopsis lyrata HOM05D000223 ORTHO05D008670 2.6e-09 65.1 78 48.7
MSTRG.19778 Avicennia marina HOM05D000088 ORTHO05D008670 2.6e-09 65.1 86 46.5
BolC3t15109H Brassica oleracea HOM05D000223 ORTHO05D008670 2.6e-09 65.1 78 50.0
Migut.J01618 Erythranthe guttata HOM05D000223 ORTHO05D008670 2.6e-09 65.1 86 47.7
Gohir.A13G001700 Gossypium hirsutum HOM05D000223 ORTHO05D008670 2.6e-09 65.1 71 53.5
AUR62021044 Chenopodium quinoa HOM05D000223 ORTHO05D008670 3.4e-09 64.7 63 55.6
ECA247G3244 Erigeron canadensis HOM05D000223 ORTHO05D008670 3.4e-09 64.7 79 50.6
Sc25g0005540 Simmondsia chinensis HOM05D000223 ORTHO05D008670 3.4e-09 64.7 78 47.4
Ah.04g150620 Amaranthus hybridus HOM05D000223 ORTHO05D008670 5.8e-09 63.9 63 55.6
A03p23000 Brassica napus HOM05D000223 ORTHO05D008670 5.8e-09 63.9 78 48.7
GSVIVG01025802001 Vitis vinifera HOM05D000223 ORTHO05D008670 5.8e-09 63.9 78 52.6
Aa31LG3G1240 Aethionema arabicum HOM05D000223 ORTHO05D008670 7.6e-09 63.5 78 46.2
BcaC01g05371 Brassica carinata HOM05D000223 ORTHO05D008670 7.6e-09 63.5 63 57.1
BcaNung05542 Brassica carinata HOM05D000088 ORTHO05D008670 7.6e-09 63.5 63 57.1
Peaxi162Scf00470g00048 Petunia axillaris HOM05D000223 ORTHO05D008670 1.0e-08 63.2 63 55.6
Sp4g23190 Schrenkiella parvula HOM05D000223 ORTHO05D008670 1.0e-08 63.2 86 46.5
Solyc01g056690.4 Solanum lycopersicum HOM05D000223 ORTHO05D008670 1.0e-08 63.2 63 55.6
Sopen01g020840 Solanum pennellii HOM05D000223 ORTHO05D008670 1.0e-08 63.2 63 55.6
Thhalv10016363m.g Eutrema salsugineum HOM05D000223 ORTHO05D008670 1.3e-08 62.8 78 47.4
Hma1.2p1_0031F.1_g018410 Hydrangea macrophylla HOM05D000223 ORTHO05D008670 1.3e-08 62.8 78 51.3
BraA03t11523Z Brassica rapa HOM05D000223 ORTHO05D008670 1.7e-08 62.4 63 55.6
Actinidia17970 Actinidia chinensis HOM05D000494 ORTHO05D008670 2.2e-08 62.0 78 50.0
Cc06_g20510 Coffea canephora HOM05D000494 ORTHO05D008670 2.9e-08 61.6 63 54.0
TWI53G0492 Tripterygium wilfordii HOM05D000223 ORTHO05D008670 2.9e-08 61.6 63 57.1
ClCG10G016330 Citrullus lanatus HOM05D000223 ORTHO05D008670 3.8e-08 61.2 63 55.6
Sed0010522 Sechium edule HOM05D000223 ORTHO05D008670 3.8e-08 61.2 63 54.0
Ca_05362_v3 Cicer arietinum L. HOM05D000223 ORTHO05D008670 4.9e-08 60.8 78 47.4
MBI10_g42733_MAGBIO Magnolia biondii HOM05D000088 ORTHO05D008670 4.9e-08 60.8 63 55.6
TPR.G16472 Trifolium pratense HOM05D000223 ORTHO05D008670 4.9e-08 60.8 63 55.6
Carub.0004s2318 Capsella rubella HOM05D000223 ORTHO05D008670 6.5e-08 60.5 78 48.7
CDE02G3287 Ceratophyllum demersum HOM05D000223 ORTHO05D008670 6.5e-08 60.5 75 49.3
Os01g0541900 Oryza sativa ssp. japonica HOM05D000223 ORTHO05D008670 6.5e-08 60.5 79 45.6
THA.LOC104814580 Tarenaya hassleriana HOM05D000223 ORTHO05D008670 8.4e-08 60.1 78 46.2
Hma1.2p1_0031F.1_g018420 Hydrangea macrophylla HOM05D000223 ORTHO05D016846 1.1e-07 59.7 75 50.7
Nitab4.5_0002068g0040 Nicotiana tabacum HOM05D000223 ORTHO05D008670 1.1e-07 59.7 63 54.0
ATR0724G099 Amborella trichopoda HOM05D000223 ORTHO05D008670 1.4e-07 59.3 77 49.4
DCAR_020602 Daucus carota HOM05D000223 ORTHO05D008670 1.9e-07 58.9 63 54.0
CAN.G197.1 Capsicum annuum HOM05D000223 ORTHO05D008670 3.2e-07 58.2 63 52.4
Medtr1g050520 Medicago truncatula HOM05D000223 ORTHO05D008670 3.2e-07 58.2 63 54.0
Nitab4.5_0001513g0020 Nicotiana tabacum HOM05D000223 ORTHO05D016846 4.2e-07 57.8 63 52.4
Hund19071 Selenicereus undatus HOM05D000223 ORTHO05D008670 4.2e-07 57.8 63 47.6
CARHR135980 Cardamine hirsuta HOM05D000223 ORTHO05D008670 5.5e-07 57.4 78 46.2
Nitab4.5_0001958g0020 Nicotiana tabacum HOM05D000223 ORTHO05D016846 2.1e-06 55.5 63 50.8
arahy.Tifrunner.gnm1.ann1.5JYC56 Arachis hypogaea HOM05D000223 ORTHO05D008670 2.7e-06 55.1 70 47.1
arahy.Tifrunner.gnm1.ann1.DZ1TRF Arachis hypogaea HOM05D000223 ORTHO05D008670 2.7e-06 55.1 70 47.1


User provided reference genes

Program Settings