Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 0.0e+00 1085.5 527 100.0
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.3e-296 1022.3 550 91.1
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.3e-296 1022.3 550 91.1
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 5.5e-287 990.3 552 89.1
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.5e-284 979.9 560 87.5
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 6.3e-283 976.9 551 87.8
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.2e-281 972.6 550 88.0
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 7.7e-281 969.9 549 88.0
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 7.7e-281 969.9 549 88.0
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 1.3e-280 969.1 553 87.5
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.9e-280 968.0 551 87.8
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 1.6e-278 962.2 549 87.2
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 8.0e-278 959.9 549 87.1
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 9.2e-274 946.4 550 85.8
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 4.5e-273 944.1 549 86.0
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 4.5e-273 944.1 549 86.0
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 4.5e-273 944.1 549 86.0
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 4.5e-273 944.1 549 86.0
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 3.8e-272 941.0 550 86.2
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 3.3e-271 937.9 549 85.8
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 7.3e-271 936.8 549 84.5
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-270 936.0 550 85.6
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-270 936.0 550 85.6
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.8e-270 934.9 550 85.1
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 8.0e-270 933.3 550 84.9
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 4.0e-269 931.0 528 87.5
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 5.8e-268 927.2 548 84.3
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 7.5e-268 926.8 550 84.9
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.3e-267 926.0 552 85.3
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 3.4e-260 901.4 517 86.5
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.8e-253 879.0 484 89.5
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.1e-246 855.5 554 80.7
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.1e-246 855.5 554 80.7
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.1e-246 855.5 554 80.7
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.1e-246 855.5 554 80.7
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.1e-246 855.5 554 80.7
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.1e-246 855.5 554 80.7
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-245 852.4 549 79.4
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.3e-240 836.3 475 88.0
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 1.6e-238 829.3 549 77.4
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 4.0e-237 824.7 551 77.5
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.9e-231 805.8 526 77.9
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 1.8e-229 799.3 549 76.1
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-202 709.5 366 94.8
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 5.3e-197 691.4 467 76.9
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 3.4e-196 688.7 457 79.4
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 6.7e-192 674.5 366 91.3
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 2.1e-185 652.9 360 90.0
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 1.8e-176 623.2 407 79.4
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 3.4e-175 619.0 375 82.9
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 3.4e-175 619.0 375 82.9
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 9.7e-175 617.5 375 83.2
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.8e-174 615.9 318 93.7
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 3.7e-174 615.5 401 79.1
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 6.3e-174 614.8 375 82.7
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.4e-173 613.6 375 82.4
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.2e-172 610.5 318 93.7
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.0e-171 607.4 374 83.4
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 2.2e-171 606.3 361 85.0
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 4.2e-162 575.5 461 66.6
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 4.9e-158 562.0 392 76.3
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 7.0e-157 558.1 549 57.4
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 1.3e-155 553.9 293 93.5
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.8e-151 538.5 473 62.8
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.2e-143 514.2 306 84.0
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 2.1e-137 493.4 260 93.5
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 6.6e-131 471.9 248 90.7
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 1.1e-130 471.1 296 80.7
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 2.4e-128 463.4 550 50.2
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 6.8e-128 461.8 550 50.2
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 2.9e-126 456.4 265 84.9
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 1.3e-123 447.6 295 78.3
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 1.7e-118 430.6 243 87.7
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.4e-118 428.7 265 81.1
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.0e-115 421.4 239 89.1
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 1.1e-114 417.9 352 66.2
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 2.6e-111 406.8 366 61.5
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 2.7e-108 396.7 265 78.1
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.7e-108 396.7 265 78.1
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 2.8e-105 386.7 279 73.5
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 1.2e-103 381.3 239 77.8
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 9.3e-101 371.7 256 72.3
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 1.4e-96 357.8 190 90.5
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 5.3e-96 355.9 178 94.4
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 8.4e-94 348.6 174 94.8
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 8.4e-94 348.6 174 94.8
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 3.2e-93 346.7 174 94.3
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 7.1e-93 345.5 198 89.4
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.2e-92 344.7 172 94.8
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 7.9e-92 342.0 367 58.3
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 1.0e-91 341.7 265 70.6
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 6.7e-91 339.0 167 95.8
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 1.1e-90 338.2 176 91.5
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.5e-90 337.0 167 95.2
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 1.3e-89 334.7 191 89.5
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 2.8e-89 333.6 175 90.3
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 9.0e-88 328.6 237 69.6
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 1.5e-87 327.8 181 91.7
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 2.0e-87 327.4 176 89.2
PSO782G0649 Papaver somniferum HOM05D003783 ORTHO05D004568 2.0e-82 310.8 256 64.5
PSO135G0232 Papaver somniferum HOM05D003783 ORTHO05D004568 1.1e-80 305.1 254 64.6
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.5e-79 299.7 238 66.0
PSO675G6716 Papaver somniferum HOM05D003783 ORTHO05D004568 1.7e-78 297.7 256 62.1
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 2.9e-78 297.0 144 95.1
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 3.6e-76 290.0 163 87.1
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 6.7e-75 285.8 227 68.7
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 9.7e-74 282.0 222 70.3
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.2e-73 280.8 162 88.3
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-72 277.7 194 72.2
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 1.8e-72 277.7 194 72.2
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 9.1e-72 275.4 162 86.4
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 1.2e-71 275.0 249 57.0
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 2.0e-71 274.2 172 79.1
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 2.0e-71 274.2 172 79.1
Nitab4.5_0008535g0060 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.6e-66 257.3 149 85.9
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 8.2e-65 252.3 136 92.6
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-61 241.1 122 96.7
BolC1t03452H Brassica oleracea HOM05D003783 ORTHO05D004568 9.4e-53 212.2 111 91.0
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.4e-53 212.2 123 87.8
CAN.G1439.8 Capsicum annuum HOM05D003783 ORTHO05D004568 1.2e-52 211.8 244 53.3
HanXRQChr01g0013391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.1e-52 211.1 108 93.5
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 2.1e-52 211.1 116 91.4
Lj2P1232T100 Lonicera japonica HOM05D003783 ORTHO05D004568 1.4e-51 208.4 106 94.3
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.3e-51 207.6 125 84.0
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.0e-50 204.5 130 80.8
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.2e-47 195.3 122 82.0
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 6.6e-46 189.5 123 78.9
ClCG09G015160 Citrullus lanatus HOM05D003783 ORTHO05D004568 3.6e-44 183.7 95 95.8
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.1e-44 183.0 331 42.3
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.8e-43 181.4 121 79.3
AT2G07768 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 3.0e-43 180.6 94 95.7
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 5.2e-43 179.9 150 60.7
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 2.0e-42 177.9 120 70.0
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-41 174.5 148 63.5
PGR028G0013 Punica granatum HOM05D003783 ORTHO05D004568 7.0e-40 169.5 94 91.5
BraSC48t46252Z Brassica rapa HOM05D003783 ORTHO05D004568 2.0e-39 167.9 115 76.5
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 1.0e-38 165.6 119 66.4
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.5e-37 161.0 94 88.3
BolC1t03443H Brassica oleracea HOM05D003783 ORTHO05D004568 1.2e-36 158.7 90 87.8
QL02p008127 Quercus lobata HOM05D003783 ORTHO05D004568 1.4e-35 155.2 75 98.7
Lalb_Chr11g0068271 Lupinus albus HOM05D003783 ORTHO05D004568 1.2e-31 142.1 77 84.4
BraSC48t46351Z Brassica rapa HOM05D003783 ORTHO05D004568 6.0e-31 139.8 74 93.2
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 3.0e-30 137.5 103 66.0
Dinv06615 Davidia involucrata HOM05D003783 ORTHO05D011738 1.8e-27 128.3 65 93.8
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 4.0e-27 127.1 93 73.1
BraSC54t46361Z Brassica rapa HOM05D003783 ORTHO05D004568 5.2e-27 126.7 66 92.4
SHI32491 Sapria himalayana HOM05D003783 ORTHO05D004568 5.2e-27 126.7 242 37.2
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.7e-23 114.4 62 90.3
Ciclev10003580m.g Citrus clementina HOM05D003783 ORTHO05D004568 3.5e-23 114.0 117 55.6
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 8.6e-22 109.4 62 79.0
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.5e-21 105.9 74 75.7
Solyc08g029270.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.7e-20 103.6 64 71.9
Ah.01g011720 Amaranthus hybridus HOM05D003783 ORTHO05D013694 2.3e-19 101.3 71 71.8
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 5.8e-18 96.7 51 90.2
TPR.G13188 Trifolium pratense HOM05D003783 ORTHO05D004568 1.3e-17 95.5 51 74.5
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.4e-16 92.0 177 38.4
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 5.4e-16 90.1 56 80.4
Lalb_Chr22g0357821 Lupinus albus HOM05D003783 ORTHO05D004568 1.6e-15 88.6 84 53.6
Solyc12g035895.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.8e-15 86.3 140 40.7
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 3.9e-14 84.0 56 76.8
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 8.6e-14 82.8 48 83.3
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.1e-13 82.4 115 45.2
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 2.1e-12 78.2 65 64.6
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 2.4e-11 74.7 48 75.0
SHI26671 Sapria himalayana HOM05D003783 ORTHO05D004568 6.8e-11 73.2 67 58.2
SHI28703 Sapria himalayana HOM05D003783 ORTHO05D004568 8.9e-11 72.8 63 60.3
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 2.0e-10 71.6 47 72.3
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.4e-10 70.5 49 71.4
Actinidia31963 Actinidia chinensis HOM05D000944 ORTHO05D003581 5.8e-10 70.1 53 66.0
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 9.9e-10 69.3 45 75.6
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.3e-09 68.9 37 81.1
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 2.2e-09 68.2 68 50.0
SEGI_06792 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.2e-09 68.2 54 68.5
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 1.9e-08 65.1 36 80.6
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 3.2e-08 64.3 70 50.0
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 4.2e-08 63.9 42 71.4
Aa31csc822G30 Aethionema arabicum HOM05D001987 ORTHO05D006514 7.8e-07 59.7 92 35.9
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 1.7e-06 58.5 35 82.9
Nitab4.5_0000172g1260 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.7e-06 56.2 40 70.0
Peaxi162Scf00122g00087 Petunia axillaris HOM05D000216 ORTHO05D000634 8.7e-06 56.2 28 92.9


User provided reference genes

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