Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1091800 Malus domestica HOM05D005510 ORTHO05D006750 1.3e-57 226.1 105 100.0
MD14G1100100 Malus domestica HOM05D005510 ORTHO05D006750 5.1e-35 151.0 78 85.9
Prupe.7G023400 Prunus persica HOM05D005510 ORTHO05D006750 2.6e-31 138.7 78 78.2
RcHm_v2.0_Chr3g0495031 Rosa chinensis HOM05D005510 ORTHO05D006750 3.8e-30 134.8 82 72.0
FvH4_1g29380 Fragaria vesca HOM05D005510 ORTHO05D006750 6.5e-30 134.0 82 70.7
FAN26G2114 Fragaria x ananassa HOM05D005510 ORTHO05D006750 2.5e-29 132.1 82 70.7
Medtr6g026730 Medicago truncatula HOM05D005510 ORTHO05D006750 2.5e-29 132.1 78 76.9
Lj5g0015267 Lotus japonicus HOM05D005510 ORTHO05D006750 4.2e-29 131.3 79 73.4
Manes.10G072300 Manihot esculenta HOM05D005510 ORTHO05D006750 4.2e-29 131.3 83 71.1
arahy.Tifrunner.gnm1.ann1.VC24PE Arachis hypogaea HOM05D005510 ORTHO05D006750 9.4e-29 130.2 79 77.2
TPR.G23234 Trifolium pratense HOM05D005510 ORTHO05D006750 1.6e-28 129.4 78 73.1
Atru.chr8.924 Acer truncatum HOM05D005510 ORTHO05D006750 2.1e-28 129.0 83 68.7
arahy.Tifrunner.gnm1.ann1.RHHN50 Arachis hypogaea HOM05D005510 ORTHO05D006750 1.4e-27 126.3 79 74.7
Eucgr.A02173 Eucalyptus grandis HOM05D005510 ORTHO05D006750 2.3e-27 125.6 83 69.9
Lalb_Chr02g0157631 Lupinus albus HOM05D005510 ORTHO05D006750 2.3e-27 125.6 78 71.8
VMungo0464G0325 Vigna mungo HOM05D005510 ORTHO05D006750 2.3e-27 125.6 78 69.2
arahy.Tifrunner.gnm1.ann1.T4STFC Arachis hypogaea HOM05D005510 ORTHO05D006750 3.0e-27 125.2 78 71.8
Phvul.004G053400 Phaseolus vulgaris HOM05D005510 ORTHO05D006750 5.2e-27 124.4 78 69.2
Actinidia38200 Actinidia chinensis HOM05D005510 ORTHO05D006750 6.7e-27 124.0 76 75.0
CSS0010239 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 6.7e-27 124.0 74 74.3
Psat1g087480 Pisum sativum HOM05D005510 ORTHO05D006750 6.7e-27 124.0 78 74.4
Potri.006G026100 Populus trichocarpa HOM05D005510 ORTHO05D006750 6.7e-27 124.0 73 75.3
Sed0017548 Sechium edule HOM05D005510 ORTHO05D006750 6.7e-27 124.0 81 67.9
TWI74G1137 Tripterygium wilfordii HOM05D005510 ORTHO05D006750 6.7e-27 124.0 73 74.0
Ciclev10011846m.g Citrus clementina HOM05D005510 ORTHO05D006750 8.8e-27 123.6 73 71.2
MBI13_g43864_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 8.8e-27 123.6 73 75.3
MBI13_g44207_MAGBIO Magnolia biondii HOM05D005510 ORTHO05D006750 8.8e-27 123.6 73 75.3
Sabra06G0019200 Salix brachista HOM05D005510 ORTHO05D006750 8.8e-27 123.6 73 75.3
Ca_04447_v3 Cicer arietinum L. HOM05D002043 ORTHO05D002207 1.5e-26 122.9 78 71.8
Glyma.05G079900 Glycine max HOM05D005510 ORTHO05D006750 1.5e-26 122.9 73 74.0
Hma1.2p1_1327F.1_g275890 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 2.6e-26 122.1 73 71.2
Rhsim13G0197800 Rhododendron simsii HOM05D005510 ORTHO05D006750 2.6e-26 122.1 76 72.4
Cpa.g.sc33.180 Carica papaya HOM05D005510 ORTHO05D006750 3.3e-26 121.7 73 72.6
Cfa019896 Carpinus fangiana HOM05D005510 ORTHO05D006750 3.3e-26 121.7 73 71.2
Haze_20353 Corylus avellana HOM05D005510 ORTHO05D006750 3.3e-26 121.7 73 71.2
QL07p015480 Quercus lobata HOM05D005510 ORTHO05D006750 3.3e-26 121.7 78 67.9
SGA_v2.0_scaffold69G23139 Striga asiatica HOM05D005510 ORTHO05D006750 3.3e-26 121.7 74 71.6
Dinv14542 Davidia involucrata HOM05D005510 ORTHO05D006750 4.4e-26 121.3 75 73.3
CiPaw.09G161300 Carya illinoinensis HOM05D005510 ORTHO05D006750 5.7e-26 120.9 73 72.6
PSO384G1661 Papaver somniferum HOM05D005510 ORTHO05D006750 7.5e-26 120.6 78 65.4
PGR042G2248 Punica granatum HOM05D005510 ORTHO05D006750 7.5e-26 120.6 73 71.2
Hma1.2p1_1327F.1_g275900 Hydrangea macrophylla HOM05D005510 ORTHO05D006750 9.7e-26 120.2 68 76.5
Lj1C1070G2 Lonicera japonica HOM05D005510 ORTHO05D006750 9.7e-26 120.2 73 74.0
Migut.J01685 Erythranthe guttata HOM05D005510 ORTHO05D006750 1.3e-25 119.8 79 68.4
PSO339G1815 Papaver somniferum HOM05D005510 ORTHO05D006750 1.3e-25 119.8 78 65.4
TAR623G1399 Trochodendron aralioides HOM05D005510 ORTHO05D006750 1.7e-25 119.4 77 68.8
SalBow6G2820 Salvia bowleyana HOM05D005510 ORTHO05D006750 2.8e-25 118.6 73 71.2
Oeu008195.1 Olea europaea HOM05D005510 ORTHO05D006750 3.7e-25 118.2 79 69.6
Peaxi162Scf00002g00419 Petunia axillaris HOM05D005510 ORTHO05D006750 4.8e-25 117.9 78 69.2
SalBow6G2337 Salvia bowleyana HOM05D005510 ORTHO05D006750 4.8e-25 117.9 73 71.2
GSVIVG01025858001 Vitis vinifera HOM05D005510 ORTHO05D006750 4.8e-25 117.9 78 66.7
DCAR_020612 Daucus carota HOM05D005510 ORTHO05D006750 8.2e-25 117.1 73 71.2
MELO3C019166.2 Cucumis melo HOM05D005510 ORTHO05D006750 1.1e-24 116.7 73 69.9
Hund24472 Selenicereus undatus HOM05D005510 ORTHO05D006750 1.1e-24 116.7 80 66.2
Thecc.05G124100 Theobroma cacao HOM05D005510 ORTHO05D006750 1.1e-24 116.7 79 68.4
unitig_749.g14152 Utricularia gibba HOM05D005510 ORTHO05D006750 1.4e-24 116.3 67 77.6
CSS0036939 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 1.8e-24 115.9 74 70.3
CANSAT11G0391 Cannabis sativa HOM05D005510 ORTHO05D006750 1.8e-24 115.9 78 64.1
THA.LOC104803249 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-24 115.9 73 68.5
THA.LOC104803301 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-24 115.9 73 68.5
THA.LOC104803303 Tarenaya hassleriana HOM05D005510 ORTHO05D006750 1.8e-24 115.9 73 68.5
PGSC0003DMG400008133 Solanum tuberosum HOM05D005510 ORTHO05D006750 2.4e-24 115.5 73 72.6
Sopen10g030080 Solanum pennellii HOM05D005510 ORTHO05D006750 3.1e-24 115.2 73 71.2
Nitab4.5_0002805g0080 Nicotiana tabacum HOM05D005510 ORTHO05D006750 5.3e-24 114.4 67 79.1
ClCG04G005050 Citrullus lanatus HOM05D005510 ORTHO05D006750 7.0e-24 114.0 73 68.5
CsaV3_4G029010 Cucumis sativus L. HOM05D005510 ORTHO05D006750 7.0e-24 114.0 73 68.5
Nitab4.5_0000646g0280 Nicotiana tabacum HOM05D005510 ORTHO05D006750 7.0e-24 114.0 73 71.2
AUR62018456 Chenopodium quinoa HOM05D005510 ORTHO05D006750 1.6e-23 112.8 80 63.8
Cc06_g18550 Coffea canephora HOM05D005510 ORTHO05D006750 1.6e-23 112.8 73 69.9
ATR1096G068 Amborella trichopoda HOM05D005510 ORTHO05D006750 2.0e-23 112.5 78 64.1
EL10Ac3g07382 Beta vulgaris HOM05D005510 ORTHO05D006750 2.0e-23 112.5 80 66.2
CSS0041188 Camellia sinensis var. sinensis HOM05D005510 ORTHO05D006750 2.7e-23 112.1 71 73.2
CAN.G248.49 Capsicum annuum HOM05D005510 ORTHO05D006750 2.7e-23 112.1 73 71.2
Solyc10g079440.2 Solanum lycopersicum HOM05D005510 ORTHO05D006750 2.7e-23 112.1 73 69.9
HanXRQChr02g0047171 Helianthus annuus HOM05D005510 ORTHO05D006750 3.5e-23 111.7 73 64.4
Nn7g37230 Nelumbo nucifera HOM05D005510 ORTHO05D006750 3.5e-23 111.7 73 65.8
Sc13g0000690 Simmondsia chinensis HOM05D005510 ORTHO05D006750 3.5e-23 111.7 73 69.9
Aa31LG10G11690 Aethionema arabicum HOM05D005510 ORTHO05D006750 4.5e-23 111.3 71 71.8
Carub.0005s2357 Capsella rubella HOM05D005510 ORTHO05D006750 4.5e-23 111.3 71 69.0
Lsat_1_v5_gn_5_40140 Lactuca sativa HOM05D005510 ORTHO05D006750 5.9e-23 110.9 73 64.4
AUR62020963 Chenopodium quinoa HOM05D005510 ORTHO05D006750 7.7e-23 110.5 80 63.8
Aqoxy3G03066 Aquilegia oxysepala HOM05D005510 ORTHO05D006750 1.0e-22 110.2 73 68.5
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 1.3e-22 109.8 73 67.1
PGSC0003DMG400012053 Solanum tuberosum HOM05D005510 ORTHO05D006750 1.3e-22 109.8 67 76.1
AL5G38220 Arabidopsis lyrata HOM05D005510 ORTHO05D006750 1.7e-22 109.4 71 67.6
EL10Ac3g07380 Beta vulgaris HOM05D005510 ORTHO05D006750 1.7e-22 109.4 80 65.0
CAN.G641.38 Capsicum annuum HOM05D005510 ORTHO05D006750 1.7e-22 109.4 73 68.5
Thhalv10005964m.g Eutrema salsugineum HOM05D005510 ORTHO05D006750 1.7e-22 109.4 73 67.1
A09p49680 Brassica napus HOM05D005510 ORTHO05D006750 3.8e-22 108.2 76 65.8
BraA09t40424Z Brassica rapa HOM05D005510 ORTHO05D006750 3.8e-22 108.2 76 65.8
CARHR166990 Cardamine hirsuta HOM05D005510 ORTHO05D006750 6.5e-22 107.5 71 67.6
AT3G56840 Arabidopsis thaliana HOM05D005510 ORTHO05D006750 8.5e-22 107.1 71 66.2
COL.COLO4_37568 Corchorus olitorius HOM05D005510 ORTHO05D006750 8.5e-22 107.1 81 60.5
C08p32070 Brassica napus HOM05D005510 ORTHO05D006750 1.1e-21 106.7 73 68.5
Gohir.D01G179900 Gossypium hirsutum HOM05D005510 ORTHO05D006750 1.9e-21 105.9 85 60.0
Gorai.002G222700 Gossypium raimondii HOM05D005510 ORTHO05D006750 1.9e-21 105.9 85 60.0
A09p49660 Brassica napus HOM05D005510 ORTHO05D006750 2.5e-21 105.5 71 67.6
BraA09t40419Z Brassica rapa HOM05D005510 ORTHO05D006750 2.5e-21 105.5 71 67.6
Gohir.A01G189700 Gossypium hirsutum HOM05D005510 ORTHO05D006750 3.2e-21 105.1 83 61.4
BcaC07g39994 Brassica carinata HOM05D005510 ORTHO05D006750 4.2e-21 104.8 71 66.2
BcaC07g40115 Brassica carinata HOM05D005510 ORTHO05D006750 4.2e-21 104.8 71 64.8
BolC8t50825H Brassica oleracea HOM05D005510 ORTHO05D006750 4.2e-21 104.8 71 66.2
Duzib093G0795 Durio zibethinus HOM05D005510 ORTHO05D006750 5.5e-21 104.4 81 63.0
Os01g0809900 Oryza sativa ssp. japonica HOM05D005510 ORTHO05D006750 1.2e-20 103.2 94 57.4
HPP92_018208 Vanilla planifolia HOM05D005510 ORTHO05D006750 1.2e-20 103.2 78 60.3
CDE08G0225 Ceratophyllum demersum HOM05D005510 ORTHO05D006750 2.7e-20 102.1 73 61.6
Zm00001eb150290 Zea mays HOM05D005510 ORTHO05D006750 4.7e-20 101.3 80 62.5
Sp5g05750 Schrenkiella parvula HOM05D005510 ORTHO05D006750 5.2e-19 97.8 71 60.6
Pp3c12_4730 Physcomitrium patens HOM05D005510 ORTHO05D006750 4.1e-16 88.2 78 50.0
Mapoly0011s0121 Marchantia polymorpha HOM05D005510 ORTHO05D006750 2.0e-15 85.9 61 57.4
AagrBONN_evm.TU.Sc2ySwM_344.4799 Anthoceros agrestis HOM05D005510 ORTHO05D000746 4.5e-15 84.7 75 46.7
SMO116G0325 Selaginella moellendorffii HOM05D005510 ORTHO05D006750 5.2e-11 71.2 59 50.8
Cre13.g574150 Chlamydomonas reinhardtii HOM05D005510 ORTHO05D006750 6.3e-09 64.3 56 55.4
Cfa027308 Carpinus fangiana HOM05D005510 ORTHO05D006750 1.2e-07 60.1 72 43.1
Zm00001eb093570 Zea mays HOM05D005510 ORTHO05D006750 1.0e-06 57.0 64 51.6


User provided reference genes

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