Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1091500 Malus domestica HOM05D004207 ORTHO05D005188 4.1e-150 534.6 257 100.0
MD12G1095500 Malus domestica HOM05D004207 ORTHO05D005188 1.9e-99 366.3 325 62.2
Prupe.1G554500 Prunus persica HOM05D004207 ORTHO05D005188 1.2e-82 310.5 323 55.4
TWI53G0562 Tripterygium wilfordii HOM05D004207 ORTHO05D005188 1.6e-74 283.5 242 61.6
Prupe.2G101700 Prunus persica HOM05D004207 ORTHO05D005188 5.6e-67 258.5 323 48.0
QL07p011416 Quercus lobata HOM05D004207 ORTHO05D005188 2.1e-66 256.5 326 46.6
Nitab4.5_0004588g0010 Nicotiana tabacum HOM05D004207 ORTHO05D005188 8.9e-65 251.1 323 45.8
Lj2C402T2 Lonicera japonica HOM05D004207 ORTHO05D005188 1.5e-64 250.4 324 47.5
CiPaw.10G041000 Carya illinoinensis HOM05D004207 ORTHO05D005188 7.6e-64 248.1 325 46.8
Nitab4.5_0000812g0050 Nicotiana tabacum HOM05D004207 ORTHO05D005188 9.9e-64 247.7 323 45.2
Oeu057783.1 Olea europaea HOM05D004207 ORTHO05D005188 9.9e-64 247.7 326 45.4
RcHm_v2.0_Chr1g0339511 Rosa chinensis HOM05D004207 ORTHO05D005188 2.9e-63 246.1 322 47.2
Dinv21465 Davidia involucrata HOM05D004207 ORTHO05D005188 2.4e-62 243.0 323 45.2
Sabra06G0027300 Salix brachista HOM05D004207 ORTHO05D005188 7.1e-62 241.5 318 45.6
Lj6A558G55 Lonicera japonica HOM05D004207 ORTHO05D005188 9.3e-62 241.1 323 44.9
Potri.006G040400 Populus trichocarpa HOM05D004207 ORTHO05D005188 9.3e-62 241.1 318 46.9
MELO3C019096.2 Cucumis melo HOM05D004207 ORTHO05D005188 1.2e-61 240.7 330 44.2
Duzib093G1083 Durio zibethinus HOM05D004207 ORTHO05D005188 1.6e-61 240.4 324 45.4
FvH4_2g10400 Fragaria vesca HOM05D004207 ORTHO05D005188 1.6e-61 240.4 318 46.9
HanXRQChr14g0437711 Helianthus annuus HOM05D004207 ORTHO05D005188 2.1e-61 240.0 324 45.1
Lsat_1_v5_gn_2_54201 Lactuca sativa HOM05D004207 ORTHO05D005188 4.6e-61 238.8 323 44.6
CSS0026158 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 6.0e-61 238.4 323 44.9
CSS0030520 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 6.0e-61 238.4 323 44.9
Nn7g36827 Nelumbo nucifera HOM05D004207 ORTHO05D005188 1.0e-60 237.7 323 45.2
Potri.016G035600 Populus trichocarpa HOM05D004207 ORTHO05D005188 1.0e-60 237.7 318 45.6
GSVIVG01025744001 Vitis vinifera HOM05D004207 ORTHO05D005188 1.7e-60 236.9 324 45.1
FvH4_5g30880 Fragaria vesca HOM05D004207 ORTHO05D005188 3.0e-60 236.1 319 46.4
Sopen10g029060 Solanum pennellii HOM05D004207 ORTHO05D005188 3.0e-60 236.1 314 43.9
TAR072G0001 Trochodendron aralioides HOM05D004207 ORTHO05D005188 3.0e-60 236.1 323 44.9
Sabra16G0037900 Salix brachista HOM05D004207 ORTHO05D005188 3.9e-60 235.7 312 46.2
Solyc10g078400.2 Solanum lycopersicum HOM05D004207 ORTHO05D005188 3.9e-60 235.7 314 43.9
Atru.chr1.1398 Acer truncatum HOM05D004207 ORTHO05D005188 6.6e-60 235.0 320 44.4
Actinidia37879 Actinidia chinensis HOM05D004207 ORTHO05D005188 6.6e-60 235.0 323 44.3
Gorai.003G087000 Gossypium raimondii HOM05D004207 ORTHO05D005188 8.7e-60 234.6 324 46.0
Cpa.g.sc92.81 Carica papaya HOM05D004207 ORTHO05D005188 1.9e-59 233.4 319 44.5
FAN20G2214 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.9e-59 233.4 318 45.3
FAN15G2977 Fragaria x ananassa HOM05D004207 ORTHO05D005188 2.5e-59 233.0 318 45.0
Manes.08G060400 Manihot esculenta HOM05D004207 ORTHO05D005188 2.5e-59 233.0 320 46.6
TWI77G0534 Tripterygium wilfordii HOM05D004207 ORTHO05D005188 2.5e-59 233.0 320 44.7
Actinidia17959 Actinidia chinensis HOM05D004207 ORTHO05D005188 4.3e-59 232.3 323 43.7
COL.COLO4_07075 Corchorus olitorius HOM05D004207 ORTHO05D005188 4.3e-59 232.3 324 44.4
Gohir.A02G105901 Gossypium hirsutum HOM05D004207 ORTHO05D005188 4.3e-59 232.3 324 44.8
Aqoxy1G00399 Aquilegia oxysepala HOM05D004207 ORTHO05D005188 5.6e-59 231.9 323 44.6
Eucgr.K01646 Eucalyptus grandis HOM05D004207 ORTHO05D005188 7.3e-59 231.5 325 44.3
MBI13_g09213_MAGBIO Magnolia biondii HOM05D004207 ORTHO05D005188 7.3e-59 231.5 323 43.0
Hma1.2p1_0007F.1_g005270 Hydrangea macrophylla HOM05D004207 ORTHO05D005188 1.3e-58 230.7 318 44.7
PGSC0003DMG400008376 Solanum tuberosum HOM05D004207 ORTHO05D005188 1.3e-58 230.7 317 42.9
FAN24G1611 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.6e-58 230.3 344 43.3
Phvul.007G243300 Phaseolus vulgaris HOM05D004207 ORTHO05D005188 1.6e-58 230.3 324 44.8
VMungo0720G0799 Vigna mungo HOM05D004207 ORTHO05D005188 2.8e-58 229.6 324 44.4
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 8.1e-58 228.0 329 44.1
Ciclev10011666m.g Citrus clementina HOM05D004207 ORTHO05D005188 1.1e-57 227.6 316 43.7
CANSAT64G1578 Cannabis sativa HOM05D004207 ORTHO05D005188 1.8e-57 226.9 326 43.6
Glyma.02G162900 Glycine max HOM05D004207 ORTHO05D005188 2.4e-57 226.5 324 44.1
Oeu021494.1 Olea europaea HOM05D004207 ORTHO05D005188 2.4e-57 226.5 320 44.4
MSTRG.19794 Avicennia marina HOM05D004207 ORTHO05D005188 9.0e-57 224.6 326 43.9
Hund24581 Selenicereus undatus HOM05D004207 ORTHO05D005188 1.2e-56 224.2 310 42.9
Cfa019993 Carpinus fangiana HOM05D004207 ORTHO05D000579 1.5e-56 223.8 293 44.7
CAN.G960.63 Capsicum annuum HOM05D004207 ORTHO05D005188 2.6e-56 223.0 315 43.5
A09p49590 Brassica napus HOM05D004207 ORTHO05D005188 3.4e-56 222.6 241 51.5
CSS0037639 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.4e-56 222.6 323 43.0
AUR62030295 Chenopodium quinoa HOM05D004207 ORTHO05D005188 4.5e-56 222.2 320 42.2
Cc06_g19790 Coffea canephora HOM05D004207 ORTHO05D005188 7.6e-56 221.5 328 43.0
PGR142G0266 Punica granatum HOM05D004207 ORTHO05D005188 1.7e-55 220.3 326 43.3
AUR62018367 Chenopodium quinoa HOM05D004207 ORTHO05D005188 2.2e-55 219.9 316 42.1
CSS0037507 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 2.9e-55 219.5 323 42.7
PSO384G4208 Papaver somniferum HOM05D004207 ORTHO05D005188 8.4e-55 218.0 322 42.5
Medtr8g106395 Medicago truncatula HOM05D004207 ORTHO05D005188 1.9e-54 216.9 324 42.9
vmacro07779 Vaccinium macrocarpon HOM05D004207 ORTHO05D005188 3.2e-54 216.1 361 39.3
Migut.J01642 Erythranthe guttata HOM05D004207 ORTHO05D005188 4.2e-54 215.7 321 41.1
Rhsim03G0036600 Rhododendron simsii HOM05D004207 ORTHO05D005188 5.4e-54 215.3 327 42.5
Thecc.05G127200 Theobroma cacao HOM05D004207 ORTHO05D005188 5.4e-54 215.3 324 42.3
THA.LOC104824395 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 7.1e-54 214.9 318 41.8
Lalb_Chr14g0365741 Lupinus albus HOM05D004207 ORTHO05D005188 9.3e-54 214.5 308 43.8
TAR633G0823 Trochodendron aralioides HOM05D004207 ORTHO05D005188 1.2e-53 214.2 259 46.7
PSO339G0215 Papaver somniferum HOM05D004207 ORTHO05D005188 2.1e-53 213.4 311 42.8
CsaV3_4G029510 Cucumis sativus L. HOM05D004207 ORTHO05D005188 2.7e-53 213.0 329 41.0
Psat7g005160 Pisum sativum HOM05D004207 ORTHO05D005188 2.7e-53 213.0 324 42.9
FAN18G2175 Fragaria x ananassa HOM05D004207 ORTHO05D005188 3.5e-53 212.6 370 39.7
Lj5g0028239 Lotus japonicus HOM05D004207 ORTHO05D005188 1.8e-52 210.3 313 42.8
EL10Ac3g07257 Beta vulgaris HOM05D004207 ORTHO05D005188 3.0e-52 209.5 310 41.0
THA.LOC104803259 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 1.1e-51 207.6 316 43.4
ClCG04G005620 Citrullus lanatus HOM05D004207 ORTHO05D005188 1.5e-51 207.2 330 40.6
TPR.G5525 Trifolium pratense HOM05D004207 ORTHO05D005188 1.5e-51 207.2 351 40.5
arahy.Tifrunner.gnm1.ann1.I2Z9WV Arachis hypogaea HOM05D004207 ORTHO05D005188 2.5e-51 206.5 319 42.3
arahy.Tifrunner.gnm1.ann1.U0ATL0 Arachis hypogaea HOM05D004207 ORTHO05D005188 3.3e-51 206.1 319 41.4
Sc13g0001060 Simmondsia chinensis HOM05D004207 ORTHO05D005188 5.6e-51 205.3 256 46.1
Gohir.D03G072800 Gossypium hirsutum HOM05D004207 ORTHO05D005188 7.4e-51 204.9 299 44.8
Sed0024335 Sechium edule HOM05D004207 ORTHO05D005188 7.4e-51 204.9 335 39.7
DCAR_020580 Daucus carota HOM05D004207 ORTHO05D005188 4.8e-50 202.2 324 40.4
unitig_744.g24179 Utricularia gibba HOM05D004207 ORTHO05D005188 4.8e-50 202.2 318 39.6
AL5G38110 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 1.1e-49 201.1 318 40.6
Thhalv10016761m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 3.1e-49 199.5 319 39.2
Glyma.09G026700 Glycine max HOM05D004207 ORTHO05D005188 6.9e-49 198.4 323 41.5
ATR0307G046 Amborella trichopoda HOM05D004207 ORTHO05D005188 9.0e-49 198.0 254 44.1
AT3G56750 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 7.6e-48 194.9 318 39.6
Carub.0004s2346 Capsella rubella HOM05D004207 ORTHO05D005188 1.3e-47 194.1 319 39.5
BcaB02g07638 Brassica carinata HOM05D004207 ORTHO05D005188 1.7e-47 193.7 318 39.6
Carub.0005s2349 Capsella rubella HOM05D004207 ORTHO05D005188 1.7e-47 193.7 318 39.6
AT2G41150 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 2.9e-47 193.0 319 38.9
BcaC08g44805 Brassica carinata HOM05D004207 ORTHO05D005188 3.8e-47 192.6 318 39.0
BolC6t37545H Brassica oleracea HOM05D004207 ORTHO05D005188 3.8e-47 192.6 318 39.0
Thhalv10006019m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 4.9e-47 192.2 318 39.3
arahy.Tifrunner.gnm1.ann1.6G7KL6 Arachis hypogaea HOM05D004207 ORTHO05D005188 6.4e-47 191.8 319 40.4
C08p31970 Brassica napus HOM05D004207 ORTHO05D005188 6.4e-47 191.8 318 39.6
AL4G39120 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 8.4e-47 191.4 316 39.2
BcaC07g39983 Brassica carinata HOM05D004207 ORTHO05D005188 8.4e-47 191.4 318 39.6
A05p02060 Brassica napus HOM05D004207 ORTHO05D005188 1.4e-46 190.7 316 40.2
SEGI_12806 Sequoiadendron giganteum HOM05D004207 ORTHO05D005188 1.4e-46 190.7 323 39.0
C06p23760 Brassica napus HOM05D004207 ORTHO05D005188 1.9e-46 190.3 318 38.7
BcaC07g40120 Brassica carinata HOM05D004207 ORTHO05D005188 2.4e-46 189.9 318 39.0
Sp5g05820 Schrenkiella parvula HOM05D004207 ORTHO05D005188 4.2e-46 189.1 318 39.0
BraA07t29968Z Brassica rapa HOM05D004207 ORTHO05D005188 5.5e-46 188.7 318 39.0
SHI31312 Sapria himalayana HOM05D004207 ORTHO05D005188 7.1e-46 188.3 353 37.1
BraA05t19202Z Brassica rapa HOM05D004207 ORTHO05D005188 1.6e-45 187.2 311 40.8
CDE02G0307 Ceratophyllum demersum HOM05D004207 ORTHO05D005188 2.1e-45 186.8 256 42.2
Aa31LG10G11590 Aethionema arabicum HOM05D004207 ORTHO05D005188 3.5e-45 186.0 302 39.1
A07p23050 Brassica napus HOM05D004207 ORTHO05D005188 4.6e-45 185.7 318 38.7
FAN27G3487 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.0e-44 184.5 249 45.8
Os03g0366700 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 1.8e-44 183.7 257 41.2
CARHR136240 Cardamine hirsuta HOM05D004207 ORTHO05D005188 6.7e-44 181.8 318 39.3
Ah.04g150870 Amaranthus hybridus HOM05D000591 ORTHO05D000579 8.7e-44 181.4 239 43.5
C04p02450 Brassica napus HOM05D004207 ORTHO05D005188 4.3e-43 179.1 252 44.4
Ah.13g077190 Amaranthus hybridus HOM05D002757 ORTHO05D003252 1.3e-42 177.6 238 44.1
BolC4t21890H Brassica oleracea HOM05D004207 ORTHO05D005188 4.8e-42 175.6 316 39.2
Zm00001eb017860 Zea mays HOM05D004207 ORTHO05D005188 6.2e-42 175.3 321 37.1
SalBow6G6231 Salvia bowleyana HOM05D004207 ORTHO05D005188 1.1e-41 174.5 316 38.0
BcaC02g12755 Brassica carinata HOM05D004207 ORTHO05D005188 3.1e-41 172.9 317 39.4
Dinv29109 Davidia involucrata HOM05D004207 ORTHO05D005188 6.5e-39 165.2 241 40.7
arahy.Tifrunner.gnm1.ann1.1DJ9GZ Arachis hypogaea HOM05D004207 ORTHO05D005188 3.5e-37 159.5 410 32.0
Lj2A402G44 Lonicera japonica HOM05D004207 ORTHO05D005188 1.0e-36 157.9 142 59.9
ECA238G2339 Erigeron canadensis HOM05D004207 ORTHO05D000645 2.3e-36 156.8 235 41.7
AagrBONN_evm.TU.Sc2ySwM_362.2903 Anthoceros agrestis HOM05D004207 ORTHO05D005188 3.0e-36 156.4 253 39.5
SMO119G0213 Selaginella moellendorffii HOM05D004207 ORTHO05D005188 5.1e-36 155.6 250 38.4
Lj6C571T2 Lonicera japonica HOM05D004207 ORTHO05D005188 8.7e-36 154.8 143 56.6
Peaxi162Scf00003g04926 Petunia axillaris HOM05D004207 ORTHO05D005188 3.7e-34 149.4 293 35.5
TAR071G0001 Trochodendron aralioides HOM05D004207 ORTHO05D005188 1.1e-33 147.9 141 56.7
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 3.1e-33 146.4 335 35.5
Ca_25841_v3 Cicer arietinum L. HOM05D004207 ORTHO05D005188 2.0e-32 143.7 242 39.7
CiPaw.09G048900 Carya illinoinensis HOM05D004207 ORTHO05D005188 2.6e-32 143.3 216 39.8
Pp3c2_30150 Physcomitrium patens HOM05D004207 ORTHO05D005188 5.0e-31 139.0 292 34.2
Os07g0641000 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 2.4e-25 120.2 105 57.1
BolC8t50815H Brassica oleracea HOM05D004207 ORTHO05D005188 9.1e-25 118.2 135 48.1
BraA09t40412Z Brassica rapa HOM05D004207 ORTHO05D005188 9.1e-25 118.2 135 48.1
BcaB06g27278 Brassica carinata HOM05D004207 ORTHO05D005188 7.2e-22 108.6 199 35.7
CARHR159490 Cardamine hirsuta HOM05D004207 ORTHO05D005188 1.6e-21 107.5 105 54.3
BcaC01g05358 Brassica carinata HOM05D004207 ORTHO05D005188 1.0e-20 104.8 105 54.3
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 7.4e-19 98.6 70 64.3
Zm00001eb109900 Zea mays HOM05D004207 ORTHO05D005188 1.7e-18 97.4 83 54.2
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 8.2e-18 95.1 193 33.2
CARHR166890 Cardamine hirsuta HOM05D004207 ORTHO05D005188 1.2e-16 91.3 94 53.2
FAN08G1869 Fragaria x ananassa HOM05D004207 ORTHO05D005188 4.5e-16 89.4 228 34.2
SEGI_35953 Sequoiadendron giganteum HOM05D004207 ORTHO05D005188 1.8e-12 77.4 61 59.0
Lj6A571G45 Lonicera japonica HOM05D004207 ORTHO05D005188 2.8e-10 70.1 57 61.4
Haze_20240 Corylus avellana HOM05D004207 ORTHO05D005188 5.9e-08 62.4 46 65.2
Zm00001eb328890 Zea mays HOM05D004207 ORTHO05D005188 4.2e-06 56.2 30 83.3
Cc00_g24130 Coffea canephora HOM05D004207 ORTHO05D005188 9.4e-06 55.1 33 69.7


User provided reference genes

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