Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1090800 Malus domestica HOM05D002282 ORTHO05D002403 5.8e-101 370.9 194 100.0
MD15G1387900 Malus domestica HOM05D002282 ORTHO05D002403 9.8e-64 247.3 236 64.8
Prupe.6G012700 Prunus persica HOM05D002282 ORTHO05D002403 2.9e-52 209.1 239 56.1
RcHm_v2.0_Chr5g0081181 Rosa chinensis HOM05D002282 ORTHO05D002403 2.4e-46 189.5 231 53.2
MD15G1388000 Malus domestica HOM05D002282 ORTHO05D002403 1.2e-45 187.2 136 77.2
RcHm_v2.0_Chr1g0331681 Rosa chinensis HOM05D002282 ORTHO05D002403 1.6e-45 186.8 231 52.8
Cpa.g.sc336.4 Carica papaya HOM05D002282 ORTHO05D002403 4.3e-43 178.7 232 50.9
Potri.001G173300 Populus trichocarpa HOM05D002282 ORTHO05D002403 9.5e-43 177.6 240 49.6
FAN25G3025 Fragaria x ananassa HOM05D002282 ORTHO05D002403 2.8e-42 176.0 231 50.6
Thecc.06G073800 Theobroma cacao HOM05D002282 ORTHO05D002403 3.6e-42 175.6 242 50.8
Sabra01G0138500 Salix brachista HOM05D002282 ORTHO05D002403 6.8e-41 171.4 233 49.4
Duzib235G0185 Durio zibethinus HOM05D002282 ORTHO05D002403 1.2e-40 170.6 237 49.4
FAN11G0586 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.2e-40 170.6 200 55.0
GSVIVG01017246001 Vitis vinifera HOM05D002282 ORTHO05D002403 3.4e-40 169.1 194 52.6
FAN16G2654 Fragaria x ananassa HOM05D002282 ORTHO05D002403 4.4e-40 168.7 231 50.6
Potri.003G060900 Populus trichocarpa HOM05D002282 ORTHO05D002403 4.4e-40 168.7 240 49.2
TAR383G0492 Trochodendron aralioides HOM05D002282 ORTHO05D002403 4.4e-40 168.7 218 51.8
Dinv30569 Davidia involucrata HOM05D002282 ORTHO05D002403 7.5e-40 167.9 200 53.0
CANSAT56G4088 Cannabis sativa HOM05D002282 ORTHO05D002403 2.9e-39 166.0 188 52.1
Nn2g11949 Nelumbo nucifera HOM05D002282 ORTHO05D002403 2.0e-37 159.8 227 48.0
MBI04_g10418_MAGBIO Magnolia biondii HOM05D002282 ORTHO05D002403 7.8e-37 157.9 240 46.7
COL.COLO4_23901 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.3e-36 157.1 242 46.7
Gohir.A05G124900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 3.9e-36 155.6 238 45.8
Atru.chr1.3116 Acer truncatum HOM05D002282 ORTHO05D002403 5.0e-36 155.2 202 48.0
arahy.Tifrunner.gnm1.ann1.NNZF0Z Arachis hypogaea HOM05D002282 ORTHO05D002403 8.6e-36 154.5 234 47.0
Cc04_g04050 Coffea canephora HOM05D002282 ORTHO05D002403 1.1e-35 154.1 230 44.8
Gohir.D05G125900 Gossypium hirsutum HOM05D002282 ORTHO05D002403 1.1e-35 154.1 240 46.7
Actinidia15798 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.5e-35 153.7 210 48.6
COL.COLO4_12890 Corchorus olitorius HOM05D002282 ORTHO05D002403 1.5e-35 153.7 237 45.1
VMungo0331G0533 Vigna mungo HOM05D002282 ORTHO05D002403 1.5e-35 153.7 156 55.8
CAN.G407.112 Capsicum annuum HOM05D002282 ORTHO05D002403 1.9e-35 153.3 226 46.5
arahy.Tifrunner.gnm1.ann1.CV1QS0 Arachis hypogaea HOM05D002282 ORTHO05D002403 2.5e-35 152.9 147 61.2
CSS0048718 Camellia sinensis var. sinensis HOM05D002282 ORTHO05D002403 4.3e-35 152.1 225 45.3
Lj5A68G60 Lonicera japonica HOM05D002282 ORTHO05D002403 4.3e-35 152.1 191 48.7
Gorai.009G129900 Gossypium raimondii HOM05D002282 ORTHO05D002403 5.6e-35 151.8 240 46.2
Sopen03g035310 Solanum pennellii HOM05D002282 ORTHO05D002403 7.3e-35 151.4 239 46.9
PGSC0003DMG400000602 Solanum tuberosum HOM05D002282 ORTHO05D002403 7.3e-35 151.4 238 46.6
Ciclev10025131m.g Citrus clementina HOM05D002282 ORTHO05D002403 9.5e-35 151.0 240 45.4
Phvul.010G153600 Phaseolus vulgaris HOM05D002282 ORTHO05D002403 9.5e-35 151.0 220 46.8
Solyc03g116380.4 Solanum lycopersicum HOM05D002282 ORTHO05D002403 1.2e-34 150.6 239 45.6
Nitab4.5_0002257g0110 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.4e-33 147.1 226 45.1
Actinidia01770 Actinidia chinensis HOM05D002282 ORTHO05D002403 1.8e-33 146.7 206 47.6
DCAR_025482 Daucus carota HOM05D002282 ORTHO05D002403 1.8e-33 146.7 210 46.7
Nitab4.5_0006574g0100 Nicotiana tabacum HOM05D002282 ORTHO05D002403 1.8e-33 146.7 207 49.8
TWI18G0202 Tripterygium wilfordii HOM05D002282 ORTHO05D002403 1.8e-33 146.7 237 44.7
Sed0027048 Sechium edule HOM05D002282 ORTHO05D002403 4.0e-33 145.6 202 48.0
TPR.G8058 Trifolium pratense HOM05D002282 ORTHO05D002403 5.2e-33 145.2 144 59.7
Rhsim08G0216500 Rhododendron simsii HOM05D002282 ORTHO05D002403 8.9e-33 144.4 238 43.3
Sed0003011 Sechium edule HOM05D002282 ORTHO05D002403 8.9e-33 144.4 203 46.8
Peaxi162Scf00274g00850 Petunia axillaris HOM05D002282 ORTHO05D002403 1.2e-32 144.1 207 48.8
CARHR015980 Cardamine hirsuta HOM05D002282 ORTHO05D002403 2.0e-32 143.3 232 43.5
Lalb_Chr04g0262501 Lupinus albus HOM05D002282 ORTHO05D002403 2.6e-32 142.9 213 47.4
CiPaw.01G244200 Carya illinoinensis HOM05D002282 ORTHO05D002403 4.4e-32 142.1 247 44.5
Eucgr.I02097 Eucalyptus grandis HOM05D002282 ORTHO05D002403 4.4e-32 142.1 208 48.6
Glyma.07G032500 Glycine max HOM05D002282 ORTHO05D002403 7.5e-32 141.4 134 60.4
CsaV3_7G032650 Cucumis sativus L. HOM05D002282 ORTHO05D002403 9.8e-32 141.0 196 46.4
Haze_05779 Corylus avellana HOM05D002282 ORTHO05D002403 2.2e-31 139.8 206 46.6
QL06p023750 Quercus lobata HOM05D002282 ORTHO05D002403 2.2e-31 139.8 239 43.1
SalBow1G0696 Salvia bowleyana HOM05D002282 ORTHO05D002403 2.2e-31 139.8 211 45.0
TPR.G3896 Trifolium pratense HOM05D002282 ORTHO05D002403 2.9e-31 139.4 214 45.3
MD12G1094900 Malus domestica HOM05D002282 ORTHO05D002403 3.7e-31 139.0 88 78.4
PGR031G0824 Punica granatum HOM05D002282 ORTHO05D002403 3.7e-31 139.0 237 43.5
Glyma.08G210000 Glycine max HOM05D002282 ORTHO05D002403 8.3e-31 137.9 135 58.5
Lj3g0004862 Lotus japonicus HOM05D002282 ORTHO05D002403 1.1e-30 137.5 228 43.9
Sp1g13790 Schrenkiella parvula HOM05D002282 ORTHO05D002403 1.1e-30 137.5 234 42.7
MELO3C023398.2 Cucumis melo HOM05D002282 ORTHO05D002403 1.9e-30 136.7 150 54.0
ECA247G0800 Erigeron canadensis HOM05D002282 ORTHO05D002403 2.4e-30 136.3 196 43.9
ClCG09G002680 Citrullus lanatus HOM05D002282 ORTHO05D002403 4.1e-30 135.6 162 51.2
THA.LOC104812495 Tarenaya hassleriana HOM05D002282 ORTHO05D002403 7.1e-30 134.8 225 44.4
AT1G15420 Arabidopsis thaliana HOM05D002282 ORTHO05D002403 9.2e-30 134.4 231 41.1
BraA08t35080Z Brassica rapa HOM05D002282 ORTHO05D002403 9.2e-30 134.4 231 42.9
QL05p027693 Quercus lobata HOM05D002282 ORTHO05D002403 1.2e-29 134.0 258 41.5
A08p31580 Brassica napus HOM05D002282 ORTHO05D002403 1.6e-29 133.7 230 43.0
Lsat_1_v5_gn_1_33521 Lactuca sativa HOM05D002282 ORTHO05D002403 3.5e-29 132.5 202 45.5
C05p13600 Brassica napus HOM05D002282 ORTHO05D002403 6.0e-29 131.7 186 45.7
BolC5t30096H Brassica oleracea HOM05D002282 ORTHO05D002403 7.8e-29 131.3 186 45.7
CiPaw.02G154700 Carya illinoinensis HOM05D002282 ORTHO05D002403 7.8e-29 131.3 213 43.7
Thhalv10008433m.g Eutrema salsugineum HOM05D002282 ORTHO05D002403 7.8e-29 131.3 231 42.0
vmacro18959 Vaccinium macrocarpon HOM05D002282 ORTHO05D002403 7.8e-29 131.3 135 57.0
C08p17190 Brassica napus HOM05D002282 ORTHO05D002403 1.0e-28 131.0 181 48.6
BolC8t49348H Brassica oleracea HOM05D002282 ORTHO05D002403 1.0e-28 131.0 181 48.6
Sabra03G0035200 Salix brachista HOM05D002282 ORTHO05D002403 1.0e-28 131.0 245 41.6
Hund00550 Selenicereus undatus HOM05D002282 ORTHO05D002403 1.0e-28 131.0 236 43.6
A06p11480 Brassica napus HOM05D002282 ORTHO05D002403 1.3e-28 130.6 186 45.7
Psat7g255200 Pisum sativum HOM05D002282 ORTHO05D002403 1.3e-28 130.6 230 43.0
MSTRG.1400 Avicennia marina HOM05D002282 ORTHO05D002403 2.3e-28 129.8 219 44.7
AL1G27540 Arabidopsis lyrata HOM05D002282 ORTHO05D002403 3.0e-28 129.4 231 40.7
Carub.0001s1522 Capsella rubella HOM05D002282 ORTHO05D002403 3.0e-28 129.4 230 42.2
Migut.C01081 Erythranthe guttata HOM05D002282 ORTHO05D002403 6.6e-28 128.3 203 44.8
Aqoxy7G02081 Aquilegia oxysepala HOM05D002282 ORTHO05D002403 8.6e-28 127.9 227 43.6
SGA_v2.0_scaffold52G18905 Striga asiatica HOM05D002282 ORTHO05D002403 8.6e-28 127.9 232 41.4
PSO339G0191 Papaver somniferum HOM05D002282 ORTHO05D002403 1.5e-27 127.1 209 42.6
Glyma.13G363200 Glycine max HOM05D002282 ORTHO05D002403 2.5e-27 126.3 207 43.0
BcaC07g38789 Brassica carinata HOM05D002282 ORTHO05D002403 4.3e-27 125.6 209 44.0
AUR62016386 Chenopodium quinoa HOM05D002282 ORTHO05D002403 4.3e-27 125.6 151 50.3
AUR62011569 Chenopodium quinoa HOM05D002282 ORTHO05D002403 7.3e-27 124.8 147 50.3
CDE07G0270 Ceratophyllum demersum HOM05D002282 ORTHO05D002403 9.5e-27 124.4 230 39.6
HanXRQChr04g0096701 Helianthus annuus HOM05D002282 ORTHO05D002403 1.2e-26 124.0 186 45.7
HanXRQChr04g0097161 Helianthus annuus HOM05D002282 ORTHO05D002403 1.2e-26 124.0 186 45.7
HanXRQChr04g0097221 Helianthus annuus HOM05D002282 ORTHO05D002403 1.2e-26 124.0 186 45.7
Oeu045971.1 Olea europaea HOM05D002282 ORTHO05D002403 2.1e-26 123.2 192 44.3
FvH4_3g44480 Fragaria vesca HOM05D002282 ORTHO05D002403 2.8e-26 122.9 106 66.0
Medtr4g011300 Medicago truncatula HOM05D002282 ORTHO05D002403 4.7e-26 122.1 234 41.9
Ah.01g020860 Amaranthus hybridus HOM05D000121 ORTHO05D000102 6.2e-26 121.7 228 41.2
EL10Ac9g21953 Beta vulgaris HOM05D000121 ORTHO05D000102 6.2e-26 121.7 237 40.1
BcaB03g13061 Brassica carinata HOM05D002282 ORTHO05D002403 6.2e-26 121.7 179 48.0
BcaC07g41500 Brassica carinata HOM05D002282 ORTHO05D002403 3.1e-25 119.4 240 37.9
BraA06t24325Z Brassica rapa HOM05D002282 ORTHO05D002403 3.1e-25 119.4 166 45.8
BolC8t52042H Brassica oleracea HOM05D002282 ORTHO05D002403 6.8e-25 118.2 150 47.3
Sc12g0008870 Simmondsia chinensis HOM05D002282 ORTHO05D002403 8.9e-25 117.9 148 52.0
PSO782G5325 Papaver somniferum HOM05D002282 ORTHO05D002403 4.9e-23 112.1 172 43.6
Aa31LG3G13660 Aethionema arabicum HOM05D002282 ORTHO05D002403 8.4e-23 111.3 181 44.2
BcaC05g25485 Brassica carinata HOM05D002282 ORTHO05D002403 8.4e-23 111.3 135 48.1
PSO170G0153 Papaver somniferum HOM05D002282 ORTHO05D002403 1.4e-22 110.5 200 40.0
SHI18081 Sapria himalayana HOM05D002282 ORTHO05D002403 2.4e-22 109.8 152 44.7
HPP92_021486 Vanilla planifolia HOM05D002282 ORTHO05D002403 4.1e-22 109.0 136 50.0
HPP92_021532 Vanilla planifolia HOM05D002282 ORTHO05D002403 9.2e-22 107.8 138 49.3
Zm00001eb294740 Zea mays HOM05D002282 ORTHO05D002403 4.6e-21 105.5 208 38.5
Ca_20422_v3 Cicer arietinum L. HOM05D002282 ORTHO05D002403 1.7e-20 103.6 192 41.1
Hund06582 Selenicereus undatus HOM05D002282 ORTHO05D002403 2.3e-20 103.2 189 40.2
Manes.04G116700 Manihot esculenta HOM05D002282 ORTHO05D002403 3.0e-20 102.8 116 56.0
C08p44950 Brassica napus HOM05D002282 ORTHO05D002403 6.6e-20 101.7 176 40.9
Os01g0649000 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.5e-19 100.5 186 41.4
FAN21G1567 Fragaria x ananassa HOM05D002282 ORTHO05D002403 1.6e-18 97.1 224 39.3
unitig_747.g21506 Utricularia gibba HOM05D002282 ORTHO05D002403 4.7e-18 95.5 193 39.4
Os12g0634800 Oryza sativa ssp. japonica HOM05D002282 ORTHO05D002403 1.1e-17 94.4 211 37.0
ATR0580G098 Amborella trichopoda HOM05D002282 ORTHO05D002403 3.1e-17 92.8 152 38.2
Duzib192G0585 Durio zibethinus HOM05D002282 ORTHO05D002403 4.0e-17 92.4 97 54.6
BcaB03g14539 Brassica carinata HOM05D002282 ORTHO05D002403 2.0e-16 90.1 142 43.0
A09p61400 Brassica napus HOM05D002282 ORTHO05D002403 9.9e-16 87.8 176 39.8
Lj3g0012512 Lotus japonicus HOM05D002282 ORTHO05D002403 1.3e-15 87.4 147 43.5
BraA09t41510Z Brassica rapa HOM05D002282 ORTHO05D002403 1.1e-14 84.3 105 53.3
Glyma.15G010600 Glycine max HOM05D002282 ORTHO05D002403 2.3e-12 76.6 105 50.5
Glyma.14G118600 Glycine max HOM05D002282 ORTHO05D002403 3.0e-12 76.3 62 62.9
HanXRQChr00c0540g0575621 Helianthus annuus HOM05D002282 ORTHO05D002403 3.4e-08 62.8 116 42.2
SEGI_26113 Sequoiadendron giganteum HOM05D002282 ORTHO05D002403 4.5e-08 62.4 128 35.2
Mapoly0078s0006 Marchantia polymorpha HOM05D002282 ORTHO05D002403 9.9e-08 61.2 146 31.5
Pp3c7_70 Physcomitrium patens HOM05D002282 ORTHO05D002403 9.9e-08 61.2 138 32.6
AagrBONN_evm.TU.Sc2ySwM_362.229 Anthoceros agrestis HOM05D002282 ORTHO05D002403 8.4e-07 58.2 145 32.4
HanXRQChr04g0097171 Helianthus annuus HOM05D004669 ORTHO05D005767 5.4e-06 55.5 81 45.7
BraA09t41511Z Brassica rapa HOM05D002282 ORTHO05D002403 7.1e-06 55.1 74 50.0


User provided reference genes

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