Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1086700 Malus domestica HOM05D004727 ORTHO05D005788 2.6e-46 188.3 95 100.0
MD01G1208600 Malus domestica HOM05D004727 ORTHO05D005788 5.2e-34 147.5 82 90.2
RcHm_v2.0_Chr1g0378381 Rosa chinensis HOM05D004727 ORTHO05D005788 2.7e-22 108.6 82 67.1
Prupe.2G301200 Prunus persica HOM05D004727 ORTHO05D005788 7.7e-22 107.1 82 69.5
FAN03G1377 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.9e-21 105.1 82 64.6
FAN10G1092 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.9e-21 105.1 82 65.9
FAN10G3700 Fragaria x ananassa HOM05D004727 ORTHO05D005788 2.9e-21 105.1 82 65.9
FAN01G2810 Fragaria x ananassa HOM05D000427 ORTHO05D000386 8.5e-21 103.6 82 65.9
Manes.06G152500 Manihot esculenta HOM05D004727 ORTHO05D005788 4.2e-20 101.3 78 62.8
Manes.06G152600 Manihot esculenta HOM05D004727 ORTHO05D005788 1.2e-19 99.8 78 61.5
Haze_00047 Corylus avellana HOM05D004727 ORTHO05D005788 1.6e-19 99.4 80 62.5
Ciclev10005858m.g Citrus clementina HOM05D004727 ORTHO05D005788 3.6e-19 98.2 77 66.2
Potri.004G073700 Populus trichocarpa HOM05D004727 ORTHO05D005788 6.1e-19 97.4 80 63.8
Cfa016290 Carpinus fangiana HOM05D002238 ORTHO05D007272 1.4e-18 96.3 80 61.2
FvH4_7g30250 Fragaria vesca HOM05D004727 ORTHO05D005788 3.0e-18 95.1 82 58.5
FAN06G4134 Fragaria x ananassa HOM05D004727 ORTHO05D005788 3.0e-18 95.1 82 58.5
FAN06G0456 Fragaria x ananassa HOM05D004727 ORTHO05D005788 4.0e-18 94.7 82 57.3
Actinidia03138 Actinidia chinensis HOM05D004727 ORTHO05D005788 6.8e-18 94.0 75 62.7
Ca_23692_v3 Cicer arietinum L. HOM05D004727 ORTHO05D005788 1.2e-17 93.2 81 61.7
Eucgr.A02736 Eucalyptus grandis HOM05D004727 ORTHO05D005788 1.5e-17 92.8 79 59.5
COL.COLO4_30213 Corchorus olitorius HOM05D004727 ORTHO05D005788 2.0e-17 92.4 70 64.3
Gohir.D08G109400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 2.0e-17 92.4 79 59.5
MSTRG.8711 Avicennia marina HOM05D004727 ORTHO05D005788 3.4e-17 91.7 78 64.1
Duzib205G1763 Durio zibethinus HOM05D004727 ORTHO05D005788 3.4e-17 91.7 79 55.7
Actinidia31841 Actinidia chinensis HOM05D004727 ORTHO05D005788 5.7e-17 90.9 81 56.8
CSS0032352 Camellia sinensis var. sinensis HOM05D004727 ORTHO05D005788 7.5e-17 90.5 74 64.9
Potri.017G146200 Populus trichocarpa HOM05D004727 ORTHO05D005788 7.5e-17 90.5 80 57.5
ATR0661G169 Amborella trichopoda HOM05D004727 ORTHO05D005788 1.7e-16 89.4 81 59.3
Medtr0057s0080 Medicago truncatula HOM05D004727 ORTHO05D005788 1.7e-16 89.4 80 60.0
Nn1g01641 Nelumbo nucifera HOM05D004727 ORTHO05D005788 1.7e-16 89.4 81 58.0
Sp7g23750 Schrenkiella parvula HOM05D004727 ORTHO05D005788 1.7e-16 89.4 83 59.0
vmacro09814 Vaccinium macrocarpon HOM05D004727 ORTHO05D005788 1.7e-16 89.4 75 62.7
Psat0ss29864g0280 Pisum sativum HOM05D004727 ORTHO05D005788 2.2e-16 89.0 85 58.8
Carub.0007s1524 Capsella rubella HOM05D004727 ORTHO05D005788 2.8e-16 88.6 73 64.4
Lj2g0018940 Lotus japonicus HOM05D004727 ORTHO05D005788 2.8e-16 88.6 79 58.2
Cpa.g.sc107.111 Carica papaya HOM05D004727 ORTHO05D005788 3.7e-16 88.2 81 55.6
Dinv35254 Davidia involucrata HOM05D004727 ORTHO05D005788 3.7e-16 88.2 64 67.2
TPR.G33517 Trifolium pratense HOM05D004727 ORTHO05D005788 3.7e-16 88.2 81 55.6
Duzib068G1006 Durio zibethinus HOM05D004727 ORTHO05D005788 4.8e-16 87.8 79 55.7
Oeu061663.1 Olea europaea HOM05D004727 ORTHO05D005788 4.8e-16 87.8 88 55.7
PGR042G1629 Punica granatum HOM05D004727 ORTHO05D005788 4.8e-16 87.8 77 63.6
Solyc03g007920.4 Solanum lycopersicum HOM05D004727 ORTHO05D005788 6.3e-16 87.4 80 53.8
SGA_v2.0_scaffold60G21112 Striga asiatica HOM05D004727 ORTHO05D005788 6.3e-16 87.4 79 64.6
Ah.06g181400 Amaranthus hybridus HOM05D004727 ORTHO05D005788 8.3e-16 87.0 85 52.9
Gohir.A08G085600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 8.3e-16 87.0 67 65.7
Sopen03g003870 Solanum pennellii HOM05D004727 ORTHO05D005788 8.3e-16 87.0 80 53.8
AT4G25720 Arabidopsis thaliana HOM05D004727 ORTHO05D005788 1.1e-15 86.7 76 63.2
Migut.F00289 Erythranthe guttata HOM05D004727 ORTHO05D005788 1.1e-15 86.7 71 62.0
Rhsim09G0200700 Rhododendron simsii HOM05D004727 ORTHO05D005788 1.1e-15 86.7 81 56.8
Thecc.03G184500 Theobroma cacao HOM05D004727 ORTHO05D005788 1.1e-15 86.7 78 56.4
AL7G27320 Arabidopsis lyrata HOM05D004727 ORTHO05D005788 1.4e-15 86.3 75 62.7
SalBow4G1885 Salvia bowleyana HOM05D004727 ORTHO05D005788 1.4e-15 86.3 79 59.5
Gorai.004G117100 Gossypium raimondii HOM05D004727 ORTHO05D005788 1.8e-15 85.9 79 58.2
PGSC0003DMG400009500 Solanum tuberosum HOM05D004727 ORTHO05D005788 2.4e-15 85.5 81 53.1
Aa31sc163G30 Aethionema arabicum HOM05D004727 ORTHO05D005788 3.1e-15 85.1 82 53.7
Aqoxy7G00234 Aquilegia oxysepala HOM05D004727 ORTHO05D005788 3.1e-15 85.1 79 59.5
arahy.Tifrunner.gnm1.ann1.G1I5XM Arachis hypogaea HOM05D004727 ORTHO05D005788 3.1e-15 85.1 84 57.1
Nitab4.5_0000084g0460 Nicotiana tabacum HOM05D004727 ORTHO05D005788 4.1e-15 84.7 81 56.8
Atru.chr1.354 Acer truncatum HOM05D004727 ORTHO05D005788 5.4e-15 84.3 74 58.1
MSTRG.27085 Avicennia marina HOM05D004727 ORTHO05D005788 5.4e-15 84.3 69 63.8
CARHR233170 Cardamine hirsuta HOM05D004727 ORTHO05D005788 5.4e-15 84.3 82 57.3
Hund11719 Selenicereus undatus HOM05D004727 ORTHO05D005788 7.0e-15 84.0 84 54.8
EL10Ac3g05418 Beta vulgaris HOM05D004727 ORTHO05D005788 9.1e-15 83.6 81 58.0
AUR62021119 Chenopodium quinoa HOM05D004727 ORTHO05D005788 9.1e-15 83.6 77 57.1
Gohir.D11G011600 Gossypium hirsutum HOM05D004727 ORTHO05D005788 9.1e-15 83.6 79 54.4
Gorai.007G013000 Gossypium raimondii HOM05D004727 ORTHO05D005788 9.1e-15 83.6 79 54.4
Sed0015096 Sechium edule HOM05D004727 ORTHO05D005788 9.1e-15 83.6 79 59.5
CsaV3_3G017470 Cucumis sativus L. HOM05D004727 ORTHO05D005788 1.6e-14 82.8 79 59.5
Phvul.004G107900 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.6e-14 82.8 85 50.6
QL09p012777 Quercus lobata HOM05D004727 ORTHO05D005788 1.6e-14 82.8 99 50.5
HPP92_025470 Vanilla planifolia HOM05D004727 ORTHO05D005788 2.0e-14 82.4 73 57.5
Thhalv10025771m.g Eutrema salsugineum HOM05D004727 ORTHO05D005788 2.7e-14 82.0 81 55.6
Lalb_Chr03g0034881 Lupinus albus HOM05D004727 ORTHO05D005788 2.7e-14 82.0 79 55.7
Sabra04G0048400 Salix brachista HOM05D004727 ORTHO05D005788 2.7e-14 82.0 72 58.3
Lsat_1_v5_gn_9_56621 Lactuca sativa HOM05D004727 ORTHO05D005788 3.5e-14 81.6 74 58.1
BolC1t02052H Brassica oleracea HOM05D004727 ORTHO05D005788 4.5e-14 81.3 52 73.1
CAN.G126.24 Capsicum annuum HOM05D004727 ORTHO05D005788 5.9e-14 80.9 52 69.2
Glyma.09G131900 Glycine max HOM05D004727 ORTHO05D005788 5.9e-14 80.9 83 53.0
HanXRQChr12g0381081 Helianthus annuus HOM05D004727 ORTHO05D005788 7.7e-14 80.5 74 59.5
Nitab4.5_0008522g0030 Nicotiana tabacum HOM05D004727 ORTHO05D005788 7.7e-14 80.5 80 55.0
Hund04788 Selenicereus undatus HOM05D004727 ORTHO05D005788 1.0e-13 80.1 77 54.5
Glyma.16G178900 Glycine max HOM05D004727 ORTHO05D005788 1.3e-13 79.7 81 54.3
Phvul.004G108600 Phaseolus vulgaris HOM05D004727 ORTHO05D005788 1.3e-13 79.7 77 58.4
Cc02_g02360 Coffea canephora HOM05D004727 ORTHO05D005788 2.3e-13 79.0 70 58.6
Medtr0057s0130 Medicago truncatula HOM05D004727 ORTHO05D005788 2.3e-13 79.0 72 62.5
C01p21250 Brassica napus HOM05D004727 ORTHO05D005788 2.9e-13 78.6 52 73.1
CDE11G0547 Ceratophyllum demersum HOM05D004727 ORTHO05D005788 2.9e-13 78.6 74 58.1
AUR62031423 Chenopodium quinoa HOM05D004727 ORTHO05D005788 2.9e-13 78.6 77 55.8
Peaxi162Scf00444g00244 Petunia axillaris HOM05D004727 ORTHO05D005788 2.9e-13 78.6 80 52.5
Sc25g0000700 Simmondsia chinensis HOM05D004727 ORTHO05D005788 3.8e-13 78.2 66 57.6
Ah.13g069170 Amaranthus hybridus HOM05D004727 ORTHO05D005788 5.0e-13 77.8 75 54.7
Nitab4.5_0000084g0450 Nicotiana tabacum HOM05D004727 ORTHO05D005788 5.0e-13 77.8 81 51.9
Solyc03g007900.3 Solanum lycopersicum HOM05D004727 ORTHO05D005788 5.0e-13 77.8 76 56.6
Sopen03g003850 Solanum pennellii HOM05D004727 ORTHO05D005788 5.0e-13 77.8 99 43.4
VMungo0464G2071 Vigna mungo HOM05D004727 ORTHO05D005788 5.0e-13 77.8 77 55.8
BraA01t01653Z Brassica rapa HOM05D004727 ORTHO05D005788 6.5e-13 77.4 52 71.2
CAN.G126.29 Capsicum annuum HOM05D004727 ORTHO05D005788 8.6e-13 77.0 80 53.8
Glyma.09G131800 Glycine max HOM05D004727 ORTHO05D005788 8.6e-13 77.0 84 48.8
A01p16970 Brassica napus HOM05D004727 ORTHO05D005788 1.1e-12 76.6 47 76.6
VMungo0464G1912 Vigna mungo HOM05D004727 ORTHO05D005788 1.1e-12 76.6 84 51.2
Gohir.A11G012400 Gossypium hirsutum HOM05D004727 ORTHO05D005788 1.5e-12 76.3 85 50.6
Nitab4.5_0008522g0010 Nicotiana tabacum HOM05D004727 ORTHO05D005788 1.5e-12 76.3 77 49.4
Zm00001eb268480 Zea mays HOM05D004727 ORTHO05D005788 1.5e-12 76.3 88 45.5
PSO478G4818 Papaver somniferum HOM05D004727 ORTHO05D005788 1.9e-12 75.9 82 53.7
unitig_0.g2469 Utricularia gibba HOM05D004727 ORTHO05D005788 2.5e-12 75.5 79 48.1
EL10Ac4g07580 Beta vulgaris HOM05D004727 ORTHO05D005788 3.2e-12 75.1 85 48.2
EL10Ac4g07582 Beta vulgaris HOM05D004727 ORTHO05D005788 3.2e-12 75.1 85 48.2
ECA232G4896 Erigeron canadensis HOM05D004727 ORTHO05D005788 4.2e-12 74.7 79 53.2
Pp3c10_5500 Physcomitrium patens HOM05D004727 ORTHO05D005788 4.2e-12 74.7 83 48.2
Glyma.09G131600 Glycine max HOM05D004727 ORTHO05D005788 7.2e-12 73.9 81 51.9
PSO782G5178 Papaver somniferum HOM05D004727 ORTHO05D005788 9.5e-12 73.6 46 76.1
Lalb_Chr19g0130641 Lupinus albus HOM05D004727 ORTHO05D005788 2.1e-11 72.4 41 80.5
GSVIVG01028857001 Vitis vinifera HOM05D004727 ORTHO05D005788 2.1e-11 72.4 80 52.5
unitig_52.g17730 Utricularia gibba HOM05D004727 ORTHO05D005788 2.8e-11 72.0 80 51.2
HanXRQChr05g0130171 Helianthus annuus HOM05D004727 ORTHO05D005788 4.7e-11 71.2 47 74.5
Os06g0103700 Oryza sativa ssp. japonica HOM05D004727 ORTHO05D005788 1.8e-10 69.3 51 60.8
CANSAT21G0167 Cannabis sativa HOM05D004727 ORTHO05D005788 4.0e-10 68.2 85 48.2
CANSAT21G2173 Cannabis sativa HOM05D004727 ORTHO05D005788 4.0e-10 68.2 85 48.2
SEGI_23205 Sequoiadendron giganteum HOM05D004727 ORTHO05D005788 5.2e-10 67.8 87 44.8
Mapoly0062s0028 Marchantia polymorpha HOM05D004727 ORTHO05D005788 3.4e-09 65.1 44 63.6
ClCG05G008410 Citrullus lanatus HOM05D004727 ORTHO05D005788 4.4e-09 64.7 112 41.1
CBR_g727 Chara braunii HOM05D004727 ORTHO05D005788 7.5e-09 63.9 56 55.4
AagrBONN_evm.TU.Sc2ySwM_344.2696 Anthoceros agrestis HOM05D004727 ORTHO05D005788 9.8e-09 63.5 44 68.2
ECA233G3504 Erigeron canadensis HOM05D004727 ORTHO05D005788 1.3e-08 63.2 60 60.0
CBR_g3311 Chara braunii HOM05D004727 ORTHO05D005788 3.7e-08 61.6 49 57.1
CBR_g3313 Chara braunii HOM05D004727 ORTHO05D005788 3.7e-08 61.6 49 57.1
SMO231G0015 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.4e-07 59.7 42 61.9
SMO351G0007 Selaginella moellendorffii HOM05D004727 ORTHO05D005788 1.4e-07 59.7 42 61.9
MCO01G501 Micromonas commoda HOM05D004727 ORTHO05D005788 7.0e-07 57.4 47 57.4
arahy.Tifrunner.gnm1.ann1.NE53A1 Arachis hypogaea HOM05D004727 ORTHO05D005788 3.5e-06 55.1 81 48.1


User provided reference genes

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