Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1080600 Malus domestica HOM05D003740 ORTHO05D004611 2.4e-254 881.7 456 100.0
MD12G1086200 Malus domestica HOM05D003740 ORTHO05D004611 5.0e-228 794.3 425 95.3
Prupe.7G050100 Prunus persica HOM05D003740 ORTHO05D004611 1.2e-216 756.5 425 89.6
Prupe.1G032300 Prunus persica HOM05D003740 ORTHO05D004611 6.4e-215 750.7 425 88.9
RcHm_v2.0_Chr3g0484361 Rosa chinensis HOM05D003740 ORTHO05D004611 4.6e-205 718.0 425 85.9
FvH4_6g24760 Fragaria vesca HOM05D003740 ORTHO05D004611 2.3e-204 715.7 425 86.8
FAN09G1292 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.0e-204 715.3 425 86.6
FAN05G1357 Fragaria x ananassa HOM05D003740 ORTHO05D004611 3.9e-204 714.9 425 86.8
RcHm_v2.0_Chr3g0484511 Rosa chinensis HOM05D003740 ORTHO05D004611 2.0e-200 702.6 425 84.5
ClCG04G004010 Citrullus lanatus HOM05D003740 ORTHO05D004611 8.4e-199 697.2 426 82.2
MELO3C014202.2 Cucumis melo HOM05D003740 ORTHO05D004611 5.4e-198 694.5 426 81.5
CsaV3_4G027630 Cucumis sativus L. HOM05D003740 ORTHO05D004611 9.3e-198 693.7 426 81.5
FAN02G1973 Fragaria x ananassa HOM05D003740 ORTHO05D004611 6.0e-197 691.0 464 79.5
Dinv34246 Davidia involucrata HOM05D003740 ORTHO05D004611 1.7e-196 689.5 425 81.6
Sed0006234 Sechium edule HOM05D003740 ORTHO05D004611 8.7e-196 687.2 427 81.3
TWI53G1619 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 8.7e-196 687.2 429 81.4
Ciclev10005020m.g Citrus clementina HOM05D003740 ORTHO05D004611 1.9e-195 686.0 429 83.0
Atru.chr6.1381 Acer truncatum HOM05D003740 ORTHO05D004611 5.6e-195 684.5 426 82.4
Dinv05312 Davidia involucrata HOM05D003740 ORTHO05D004611 7.3e-195 684.1 428 81.1
Sed0013360 Sechium edule HOM05D003740 ORTHO05D004611 1.6e-194 682.9 427 81.0
Glyma.02G190700 Glycine max HOM05D003740 ORTHO05D004611 2.8e-194 682.2 428 81.5
Lj5g0015883 Lotus japonicus HOM05D003740 ORTHO05D004611 2.8e-194 682.2 425 80.9
arahy.Tifrunner.gnm1.ann1.G7Z7YE Arachis hypogaea HOM05D003740 ORTHO05D004611 2.4e-193 679.1 393 84.7
Cfa016754 Carpinus fangiana HOM05D003740 ORTHO05D004611 2.4e-193 679.1 427 80.8
Haze_19750 Corylus avellana HOM05D003740 ORTHO05D004611 3.1e-193 678.7 427 80.6
FAN14G5242 Fragaria x ananassa HOM05D003740 ORTHO05D004611 5.3e-193 677.9 405 86.4
VMungo0720G0943 Vigna mungo HOM05D003740 ORTHO05D004611 9.0e-193 677.2 428 81.1
Peaxi162Scf00130g01015 Petunia axillaris HOM05D003740 ORTHO05D004611 1.2e-192 676.8 428 80.8
TWI74G0940 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 1.2e-192 676.8 430 79.3
Phvul.007G249500 Phaseolus vulgaris HOM05D003740 ORTHO05D004611 3.4e-192 675.2 428 81.1
Eucgr.A02296 Eucalyptus grandis HOM05D003740 ORTHO05D004611 4.5e-192 674.9 429 80.2
TWI77G0796 Tripterygium wilfordii HOM05D003740 ORTHO05D004611 4.5e-192 674.9 430 80.0
Manes.08G053600 Manihot esculenta HOM05D003740 ORTHO05D004611 5.8e-192 674.5 426 79.6
GSVIVG01033552001 Vitis vinifera HOM05D003740 ORTHO05D004611 5.8e-192 674.5 390 85.6
Migut.K00119 Erythranthe guttata HOM05D003740 ORTHO05D004611 7.6e-192 674.1 425 81.2
CSS0019779 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 3.8e-191 671.8 396 84.1
Medtr3g045150 Medicago truncatula HOM05D003740 ORTHO05D004611 4.9e-191 671.4 425 79.1
Thecc.05G145300 Theobroma cacao HOM05D003740 ORTHO05D004611 8.4e-191 670.6 427 80.6
PGR004G2716 Punica granatum HOM05D003740 ORTHO05D004611 2.4e-190 669.1 427 79.6
arahy.Tifrunner.gnm1.ann1.0DR8LC Arachis hypogaea HOM05D003740 ORTHO05D004611 3.2e-190 668.7 393 84.2
TPR.G19664 Trifolium pratense HOM05D003740 ORTHO05D004611 4.2e-190 668.3 427 80.1
Actinidia39193 Actinidia chinensis HOM05D003740 ORTHO05D004611 5.4e-190 667.9 425 79.5
Gohir.D09G116000 Gossypium hirsutum HOM05D003740 ORTHO05D004611 5.4e-190 667.9 425 79.5
Sopen04g008590 Solanum pennellii HOM05D003740 ORTHO05D004611 5.4e-190 667.9 429 80.2
Glyma.10G105900 Glycine max HOM05D003740 ORTHO05D004611 7.1e-190 667.5 428 80.6
Medtr0012s0090 Medicago truncatula HOM05D003740 ORTHO05D004611 7.1e-190 667.5 425 78.6
Gohir.A09G119800 Gossypium hirsutum HOM05D003740 ORTHO05D004611 9.3e-190 667.2 425 79.3
Ca_25790_v3 Cicer arietinum L. HOM05D003740 ORTHO05D004611 2.7e-189 665.6 425 78.8
Rhsim03G0031000 Rhododendron simsii HOM05D003740 ORTHO05D004611 3.5e-189 665.2 425 78.6
Migut.J01706 Erythranthe guttata HOM05D003740 ORTHO05D004611 7.9e-189 664.1 426 79.3
Psat6g118200 Pisum sativum HOM05D003740 ORTHO05D004611 2.3e-188 662.5 427 79.2
MSTRG.26143 Avicennia marina HOM05D003740 ORTHO05D004611 1.5e-187 659.8 425 79.1
CiPaw.09G042200 Carya illinoinensis HOM05D003740 ORTHO05D004611 4.3e-187 658.3 427 79.6
Lalb_Chr02g0156411 Lupinus albus HOM05D003740 ORTHO05D004611 5.6e-187 657.9 427 79.2
QL07p005086 Quercus lobata HOM05D003740 ORTHO05D004611 2.1e-186 656.0 393 83.2
Gorai.006G134300 Gossypium raimondii HOM05D003740 ORTHO05D004611 3.7e-186 655.2 425 79.8
Actinidia38142 Actinidia chinensis HOM05D003740 ORTHO05D004611 8.1e-186 654.1 425 78.1
THA.LOC104803288 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 8.1e-186 654.1 426 77.7
THA.LOC104816968 Tarenaya hassleriana HOM05D003740 ORTHO05D004611 8.1e-186 654.1 427 77.8
Lalb_Chr21g0316601 Lupinus albus HOM05D003740 ORTHO05D004611 2.4e-185 652.5 421 78.4
MSTRG.10801 Avicennia marina HOM05D003740 ORTHO05D004611 4.0e-185 651.7 425 78.6
Atru.chr1.1193 Acer truncatum HOM05D003740 ORTHO05D004611 1.3e-183 646.7 390 84.1
HanXRQChr10g0277771 Helianthus annuus HOM05D003740 ORTHO05D004611 2.2e-183 646.0 427 77.3
Solyc04g016520.3 Solanum lycopersicum HOM05D003740 ORTHO05D004611 1.1e-182 643.7 429 78.3
Thhalv10016688m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 1.9e-182 642.9 432 76.9
SGA_v2.0_scaffold105G30359 Striga asiatica HOM05D003740 ORTHO05D004611 2.4e-182 642.5 405 81.2
Oeu006922.2 Olea europaea HOM05D003740 ORTHO05D004611 1.6e-181 639.8 428 76.4
PGSC0003DMG400012722 Solanum tuberosum HOM05D003740 ORTHO05D004611 3.5e-181 638.6 429 78.1
AT2G41490 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 1.8e-180 636.3 433 75.8
Ah.13g076780 Amaranthus hybridus HOM05D003740 ORTHO05D004611 3.0e-180 635.6 430 76.0
Duzib128G1723 Durio zibethinus HOM05D003740 ORTHO05D004611 6.7e-180 634.4 409 79.0
Sabra16G0047800 Salix brachista HOM05D003740 ORTHO05D004611 8.7e-180 634.0 393 79.6
CANSAT80G1617 Cannabis sativa HOM05D003740 ORTHO05D004611 1.9e-179 632.9 426 75.8
AL4G39580 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 3.3e-179 632.1 433 75.8
CARHR136610 Cardamine hirsuta HOM05D003740 ORTHO05D004611 3.3e-179 632.1 432 75.9
EL10Ac3g07158 Beta vulgaris HOM05D003740 ORTHO05D004611 5.6e-179 631.3 435 74.7
Nn6g34910 Nelumbo nucifera HOM05D003740 ORTHO05D004611 5.6e-179 631.3 397 78.8
A05p02310 Brassica napus HOM05D003740 ORTHO05D004611 2.1e-178 629.4 425 75.5
BolC4t21915H Brassica oleracea HOM05D003740 ORTHO05D004611 3.7e-178 628.6 425 75.5
Carub.0004s2379 Capsella rubella HOM05D003740 ORTHO05D004611 3.7e-178 628.6 430 75.3
CSS0009879 Camellia sinensis var. sinensis HOM05D003740 ORTHO05D004611 4.8e-178 628.2 431 76.1
AL5G38710 Arabidopsis lyrata HOM05D003740 ORTHO05D004611 6.2e-178 627.9 428 75.2
BraA05t19226Z Brassica rapa HOM05D003740 ORTHO05D004611 6.2e-178 627.9 425 76.0
Sp4g23760 Schrenkiella parvula HOM05D003740 ORTHO05D004611 8.2e-178 627.5 432 74.5
BraA04t16052Z Brassica rapa HOM05D003740 ORTHO05D004611 1.1e-177 627.1 428 74.8
C04p02750 Brassica napus HOM05D003740 ORTHO05D004611 1.4e-177 626.7 425 75.5
Potri.006G045700 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.4e-177 626.7 430 75.1
C08p32520 Brassica napus HOM05D003740 ORTHO05D004611 1.8e-177 626.3 428 74.8
Carub.0005s2403 Capsella rubella HOM05D003740 ORTHO05D004611 1.8e-177 626.3 428 74.8
Thhalv10007732m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 2.4e-177 625.9 425 74.6
Nn7g37216 Nelumbo nucifera HOM05D003740 ORTHO05D004611 3.1e-177 625.5 397 78.6
BcaC02g09904 Brassica carinata HOM05D003740 ORTHO05D004611 4.0e-177 625.2 431 73.8
BcaNung06793 Brassica carinata HOM05D003740 ORTHO05D004611 4.0e-177 625.2 426 75.8
C04p35340 Brassica napus HOM05D003740 ORTHO05D004611 4.0e-177 625.2 431 73.8
BolC4t25088H Brassica oleracea HOM05D003740 ORTHO05D004611 4.0e-177 625.2 431 73.8
A09p50150 Brassica napus HOM05D003740 ORTHO05D004611 5.3e-177 624.8 428 74.3
BolC8t50867H Brassica oleracea HOM05D003740 ORTHO05D004611 5.3e-177 624.8 428 74.5
BraA09t40467Z Brassica rapa HOM05D003740 ORTHO05D004611 5.3e-177 624.8 428 74.3
Lsat_1_v5_gn_6_15201 Lactuca sativa HOM05D003740 ORTHO05D004611 6.9e-177 624.4 422 76.5
BcaB02g08329 Brassica carinata HOM05D003740 ORTHO05D004611 3.4e-176 622.1 425 74.8
AT3G57220 Arabidopsis thaliana HOM05D003740 ORTHO05D004611 5.8e-176 621.3 428 74.3
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.0e-175 620.5 379 80.7
DCAR_020539 Daucus carota HOM05D003740 ORTHO05D004611 1.7e-175 619.8 407 77.4
Thhalv10005999m.g Eutrema salsugineum HOM05D003740 ORTHO05D004611 3.8e-175 618.6 425 74.1
TAR636G0750 Trochodendron aralioides HOM05D003740 ORTHO05D004611 8.4e-175 617.5 405 77.5
unitig_748.g7227 Utricularia gibba HOM05D003740 ORTHO05D004611 8.4e-175 617.5 424 74.1
PSO384G1999 Papaver somniferum HOM05D003740 ORTHO05D004611 2.5e-174 615.9 382 79.8
Rhsim04G0107900 Rhododendron simsii HOM05D003740 ORTHO05D004611 9.3e-174 614.0 387 80.6
Sc13g0001500 Simmondsia chinensis HOM05D003740 ORTHO05D004611 9.3e-174 614.0 407 76.2
Aa31LG1G23510 Aethionema arabicum HOM05D003740 ORTHO05D004611 1.6e-173 613.2 431 73.1
PSO339G5696 Papaver somniferum HOM05D003740 ORTHO05D004611 2.1e-173 612.8 382 79.3
CANSAT80G1359 Cannabis sativa HOM05D003740 ORTHO05D004611 2.7e-173 612.5 426 74.2
Cc06_g18360 Coffea canephora HOM05D003740 ORTHO05D004611 7.9e-173 610.9 425 75.3
MBI13_g04792_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.3e-170 603.6 408 74.3
AUR62024529 Chenopodium quinoa HOM05D003740 ORTHO05D004611 1.6e-170 603.2 436 71.8
Potri.016G042100 Populus trichocarpa HOM05D003740 ORTHO05D004611 1.8e-169 599.7 381 78.5
AUR62026121 Chenopodium quinoa HOM05D003740 ORTHO05D004611 3.1e-169 599.0 435 71.7
Lj2A390G27 Lonicera japonica HOM05D003740 ORTHO05D004611 4.1e-169 598.6 412 76.2
Lj1A1122T44 Lonicera japonica HOM05D003740 ORTHO05D004611 2.2e-167 592.8 432 72.5
Aqoxy2G02041 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 5.0e-167 591.7 428 70.6
Duzib106G0923 Durio zibethinus HOM05D003740 ORTHO05D004611 5.0e-167 591.7 425 73.6
CDE08G1337 Ceratophyllum demersum HOM05D003740 ORTHO05D004611 8.5e-167 590.9 355 81.4
Aa31LG10G12120 Aethionema arabicum HOM05D003740 ORTHO05D004611 9.3e-166 587.4 474 65.8
CAN.G1237.3 Capsicum annuum HOM05D003740 ORTHO05D004611 9.3e-166 587.4 336 86.0
TPR.G2316 Trifolium pratense HOM05D003740 ORTHO05D004611 2.7e-165 585.9 393 75.1
SEGI_04340 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 1.0e-164 583.9 425 69.4
SalBow1G2954 Salvia bowleyana HOM05D003740 ORTHO05D004611 8.7e-164 580.9 457 69.8
A04p03820 Brassica napus HOM05D003740 ORTHO05D004611 2.2e-162 576.2 428 70.3
Nitab4.5_0000826g0260 Nicotiana tabacum HOM05D003740 ORTHO05D004611 7.7e-160 567.8 437 70.7
COL.COLO4_21300 Corchorus olitorius HOM05D003740 ORTHO05D004611 3.8e-159 565.5 380 76.6
Os07g0661100 Oryza sativa ssp. japonica HOM05D003740 ORTHO05D004611 2.8e-154 549.3 375 71.2
RcHm_v2.0_Chr3g0484421 Rosa chinensis HOM05D003740 ORTHO05D004611 2.8e-154 549.3 453 66.7
BcaC07g40064 Brassica carinata HOM05D003740 ORTHO05D004611 2.4e-153 546.2 323 83.3
Zm00001eb110840 Zea mays HOM05D003740 ORTHO05D004611 1.1e-150 537.3 425 64.7
Zm00001eb329870 Zea mays HOM05D003740 ORTHO05D004611 1.9e-150 536.6 393 68.4
TAR633G2274 Trochodendron aralioides HOM05D003740 ORTHO05D004611 1.6e-149 533.5 321 82.2
Hund19125 Selenicereus undatus HOM05D003740 ORTHO05D004611 2.7e-149 532.7 438 67.1
DCAR_016970 Daucus carota HOM05D003740 ORTHO05D004611 5.2e-148 528.5 411 68.6
SMO364G0515 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.4e-145 520.4 395 66.1
Medtr8g446850 Medicago truncatula HOM05D003740 ORTHO05D004611 7.0e-145 518.1 330 78.8
Pp3c2_18380 Physcomitrium patens HOM05D003740 ORTHO05D004611 2.7e-141 506.1 444 61.3
ATR0782G053 Amborella trichopoda HOM05D003740 ORTHO05D004611 2.8e-138 496.1 373 69.7
TPR.G11551 Trifolium pratense HOM05D003740 ORTHO05D004611 2.9e-135 486.1 398 65.6
AagrBONN_evm.TU.Sc2ySwM_344.2027 Anthoceros agrestis HOM05D003740 ORTHO05D004611 4.2e-134 482.3 403 62.3
Mapoly0120s0027 Marchantia polymorpha HOM05D003740 ORTHO05D004611 6.1e-133 478.4 431 58.5
SHI12878 Sapria himalayana HOM05D003740 ORTHO05D004611 1.3e-130 470.7 425 60.0
CARHR167400 Cardamine hirsuta HOM05D003740 ORTHO05D004611 8.3e-130 468.0 349 70.5
AUR62004393 Chenopodium quinoa HOM05D003740 ORTHO05D004611 2.5e-126 456.4 371 65.0
vmacro09044 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 8.6e-119 431.4 242 88.4
AUR62022599 Chenopodium quinoa HOM05D003740 ORTHO05D004611 5.2e-116 422.2 336 65.2
SMO112G0012 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 4.3e-110 402.5 272 73.5
Sp5g05360 Schrenkiella parvula HOM05D003740 ORTHO05D004611 4.4e-107 392.5 231 82.7
CiPaw.10G036600 Carya illinoinensis HOM05D003740 ORTHO05D004611 7.5e-99 365.2 212 87.3
AagrBONN_evm.TU.Sc2ySwM_368.1663 Anthoceros agrestis HOM05D003740 ORTHO05D004611 2.1e-96 357.1 407 48.9
Cre16.g663100 Chlamydomonas reinhardtii HOM05D003740 ORTHO05D004611 1.9e-94 350.5 384 50.5
SGA_v2.0_scaffold69G23130 Striga asiatica HOM05D003740 ORTHO05D004611 5.4e-89 332.4 352 56.5
PRCOL_00006546 Prasinoderma coloniale HOM05D003740 ORTHO05D004611 1.2e-88 331.3 391 48.6
CBR_g48687 Chara braunii HOM05D003740 ORTHO05D004611 2.1e-85 320.5 275 60.0
SEGI_25729 Sequoiadendron giganteum HOM05D003740 ORTHO05D004611 7.6e-83 312.0 196 76.0
Cpa.g.sc120.7 Carica papaya HOM05D003740 ORTHO05D004611 9.9e-67 258.5 151 82.1
Aqoxy6G01654 Aquilegia oxysepala HOM05D003740 ORTHO05D004611 2.7e-64 250.4 223 61.9
MCO05G206 Micromonas commoda HOM05D003740 ORTHO05D004611 3.0e-63 246.9 302 46.0
Haze_26500 Corylus avellana HOM05D003740 ORTHO05D004611 5.6e-62 242.7 309 43.7
Actinidia17677 Actinidia chinensis HOM05D003740 ORTHO05D004611 2.4e-60 237.3 425 39.5
HPP92_001282 Vanilla planifolia HOM05D003740 ORTHO05D004611 1.4e-57 228.0 215 55.8
Cfa024885 Carpinus fangiana HOM05D003740 ORTHO05D004611 1.9e-54 217.6 305 41.3
Psat6g050760 Pisum sativum HOM05D003740 ORTHO05D018044 2.9e-50 203.8 121 81.0
AagrBONN_evm.TU.Sc2ySwM_117.4057 Anthoceros agrestis HOM05D003740 ORTHO05D004611 7.2e-49 199.1 183 57.9
Cpa.g.c37387 Carica papaya HOM05D003740 ORTHO05D004611 9.4e-41 172.2 134 68.7
TPR.G13517 Trifolium pratense HOM05D003740 ORTHO05D027079 1.1e-30 138.7 88 75.0
vmacro09045 Vaccinium macrocarpon HOM05D003740 ORTHO05D004611 9.7e-30 135.6 75 84.0
MBI05_g15360_MAGBIO Magnolia biondii HOM05D003740 ORTHO05D004611 1.6e-24 118.2 70 85.7
SMO112G0048 Selaginella moellendorffii HOM05D003740 ORTHO05D004611 1.8e-20 104.8 75 65.3
Nitab4.5_0001618g0330 Nicotiana tabacum HOM05D003740 ORTHO05D004611 1.0e-18 99.0 68 69.1
BNapus_Darmor_BZH_scaffold_38p00040 Brassica napus HOM05D003740 ORTHO05D027079 2.2e-18 97.8 121 49.6
BcaC09g48688 Brassica carinata HOM05D003740 ORTHO05D027079 2.9e-18 97.4 84 57.1
Psat6g009800 Pisum sativum HOM05D003740 ORTHO05D004611 3.2e-17 94.0 61 72.1
BcaC02g11255 Brassica carinata HOM05D003740 ORTHO05D015230 6.1e-16 89.7 55 72.7
TPR.G40499 Trifolium pratense HOM05D003740 ORTHO05D004611 1.3e-13 82.0 60 68.3
TPR.G2297 Trifolium pratense HOM05D003740 ORTHO05D411092 2.2e-13 81.3 141 37.6
Pp3c1_19750 Physcomitrium patens HOM05D003740 ORTHO05D004611 1.4e-12 78.6 123 40.7
A03p42520 Brassica napus HOM05D024621 ORTHO05D015230 1.2e-06 58.9 55 58.2
BolC4t23402H Brassica oleracea HOM05D003740 ORTHO05D015230 7.5e-06 56.2 35 68.6
Ah.04g151350 Amaranthus hybridus HOM05D002173 ORTHO05D002189 9.8e-06 55.8 36 69.4


User provided reference genes

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