Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 3.9e-245 851.3 512 100.0
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 3.1e-210 735.3 521 83.7
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 2.6e-164 582.8 533 67.2
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 8.6e-152 541.2 541 63.6
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.4e-147 525.0 541 64.0
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.9e-141 505.0 533 60.6
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 3.4e-132 476.1 509 60.1
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 2.2e-131 473.4 511 61.3
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 6.4e-131 471.9 511 61.3
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.4e-125 454.1 531 51.6
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 6.9e-125 451.8 530 51.1
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.4e-124 449.5 455 55.6
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 1.3e-123 447.6 459 55.8
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 2.9e-123 446.4 521 51.4
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.1e-122 444.5 455 55.4
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.4e-122 444.1 457 57.8
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.2e-122 442.6 458 55.5
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 9.3e-122 441.4 545 54.1
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 9.3e-122 441.4 531 58.0
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 4.6e-121 439.1 460 57.6
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 6.0e-121 438.7 532 50.4
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.5e-119 433.3 468 56.0
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 3.3e-119 433.0 528 50.2
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 4.3e-119 432.6 532 50.9
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 9.6e-119 431.4 515 54.6
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.6e-118 430.6 560 52.7
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 5.3e-117 425.6 531 50.1
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 6.5e-115 418.7 531 54.6
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.4e-114 417.5 533 48.4
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 7.1e-114 415.2 445 55.1
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 4.3e-111 406.0 534 46.6
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 2.1e-110 403.7 526 46.8
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 1.4e-109 401.0 536 49.1
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.1e-109 399.8 519 50.9
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 5.3e-109 399.1 543 49.5
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 4.5e-108 396.0 527 49.9
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.6e-108 395.2 459 52.7
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 2.2e-107 393.7 358 59.2
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 1.2e-105 387.9 451 51.4
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 5.1e-104 382.5 536 50.6
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 5.1e-104 382.5 554 44.6
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 1.5e-103 380.9 441 52.4
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 2.2e-102 377.1 484 55.0
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 8.2e-102 375.2 445 49.9
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 1.1e-101 374.8 457 52.1
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.1e-101 374.8 477 49.5
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 4.1e-101 372.9 446 49.1
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 9.1e-101 371.7 449 49.2
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 3.4e-100 369.8 464 51.3
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 5.9e-100 369.0 529 45.7
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 1.7e-99 367.5 350 58.9
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 7.2e-98 362.1 525 47.8
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 1.8e-96 357.5 525 47.6
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 3.9e-96 356.3 451 48.8
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 6.7e-96 355.5 456 49.3
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 8.8e-96 355.1 392 51.8
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 2.6e-95 353.6 519 48.7
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 9.7e-95 351.7 453 49.0
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 1.3e-94 351.3 451 48.6
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 2.8e-94 350.1 454 48.7
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 4.8e-94 349.4 460 49.3
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 8.2e-94 348.6 400 52.0
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 6.9e-93 345.5 377 54.6
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 6.9e-93 345.5 453 47.5
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 1.2e-92 344.7 464 45.3
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 4.5e-92 342.8 460 47.0
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 4.5e-92 342.8 447 46.8
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 1.3e-91 341.3 443 48.8
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 6.5e-91 339.0 449 46.3
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 8.5e-91 338.6 437 46.9
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 9.4e-90 335.1 456 46.7
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 1.2e-89 334.7 450 47.1
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 1.6e-89 334.3 444 45.7
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 6.1e-89 332.4 395 50.9
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 6.1e-89 332.4 453 46.8
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 7.9e-89 332.0 455 45.7
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 3.0e-88 330.1 447 47.7
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 6.7e-88 328.9 464 47.0
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 8.8e-88 328.6 461 45.6
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-87 328.2 445 47.2
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 2.6e-87 327.0 361 52.6
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 3.3e-87 326.6 528 42.4
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 5.7e-87 325.9 363 50.1
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 5.7e-87 325.9 363 50.1
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 5.7e-87 325.9 363 50.1
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 2.2e-86 323.9 362 51.9
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 3.7e-86 323.2 489 52.1
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 6.3e-86 322.4 363 50.4
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 6.3e-86 322.4 459 46.8
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 1.1e-85 321.6 482 47.5
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 1.1e-85 321.6 346 52.0
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.8e-85 320.9 450 46.0
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 1.8e-85 320.9 439 46.7
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 9.1e-85 318.5 365 50.7
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 1.7e-83 314.3 469 44.8
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 3.8e-83 313.2 356 52.8
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 5.0e-83 312.8 367 49.9
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 6.5e-83 312.4 449 45.7
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 6.5e-83 312.4 461 44.0
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 1.6e-81 307.8 469 42.0
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 4.7e-81 306.2 457 43.3
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 4.7e-81 306.2 465 44.1
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.0e-80 305.1 366 46.4
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.4e-80 304.7 362 47.2
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 2.0e-79 300.8 452 46.7
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 4.4e-79 299.7 362 49.7
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 4.4e-79 299.7 459 44.2
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 9.7e-79 298.5 362 50.6
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 9.7e-79 298.5 362 50.6
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 2.8e-78 297.0 389 47.8
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 2.8e-78 297.0 389 47.8
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 2.8e-78 297.0 389 47.8
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 1.1e-77 295.0 445 44.5
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.1e-77 295.0 339 51.9
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 1.4e-77 294.7 443 43.1
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 9.1e-77 292.0 378 47.6
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 9.1e-77 292.0 360 48.3
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 5.9e-76 289.3 420 45.2
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 1.3e-75 288.1 401 45.4
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 9.4e-74 282.0 446 43.9
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 2.3e-72 277.3 306 52.3
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 5.2e-72 276.2 388 43.6
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 5.7e-71 272.7 530 35.7
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 7.5e-71 272.3 326 49.4
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 1.4e-69 268.1 313 51.1
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 2.0e-68 264.2 362 44.5
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 7.7e-68 262.3 390 43.6
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 6.5e-67 259.2 432 39.8
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 8.6e-67 258.8 538 42.6
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 3.6e-65 253.4 306 48.0
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 3.4e-63 246.9 445 40.2
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 3.1e-61 240.4 289 47.1
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.7e-60 237.3 215 60.0
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 5.9e-60 236.1 379 39.1
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 5.9e-60 236.1 331 44.7
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 7.5e-55 219.2 386 37.6
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 6.4e-54 216.1 373 38.1
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.6e-52 211.5 289 46.0
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.2e-48 196.4 531 31.8
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 5.2e-48 196.4 531 31.8
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 2.4e-45 187.6 494 32.0
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.4e-37 161.8 177 54.2
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 3.2e-37 160.6 177 54.8
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-33 148.7 226 41.2
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 2.4e-32 144.4 431 28.3
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.1e-32 144.1 297 35.4
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.4e-31 140.2 220 40.0
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.7e-30 138.3 205 39.0
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.2e-28 132.1 407 27.8
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.9e-26 124.8 336 28.3
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 2.1e-25 121.3 503 25.6
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 2.4e-24 117.9 118 52.5
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 9.0e-24 115.9 338 29.9
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 2.0e-23 114.8 168 46.4
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 5.8e-23 113.2 209 35.4
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 1.7e-22 111.7 335 28.4
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.3e-19 102.1 215 35.8
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 4.0e-16 90.5 143 44.8
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.2e-15 89.0 104 49.0
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 2.2e-14 84.7 94 50.0
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 5.1e-11 73.6 56 67.9
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.8e-06 57.4 50 50.0


User provided reference genes

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