Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1069500 Malus domestica HOM05D004060 ORTHO05D004967 8.2e-126 454.1 301 100.0
Prupe.7G064800 Prunus persica HOM05D004060 ORTHO05D004967 3.8e-75 285.8 302 79.1
MD12G1072300 Malus domestica HOM05D004060 ORTHO05D004967 4.1e-61 239.2 307 70.7
RcHm_v2.0_Chr3g0481501 Rosa chinensis HOM05D004060 ORTHO05D004967 6.4e-54 215.3 303 67.7
FAN05G0004 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.7e-52 209.9 303 68.6
FAN02G3665 Fragaria x ananassa HOM05D004060 ORTHO05D004967 6.0e-52 208.8 303 68.6
FAN09G1680 Fragaria x ananassa HOM05D004060 ORTHO05D004967 7.8e-52 208.4 303 68.3
FvH4_6g23510 Fragaria vesca HOM05D004060 ORTHO05D004967 5.6e-50 202.2 303 68.0
FAN14G3078 Fragaria x ananassa HOM05D004060 ORTHO05D004967 5.6e-50 202.2 303 68.0
FAN05G5649 Fragaria x ananassa HOM05D004060 ORTHO05D004967 2.7e-44 183.3 305 64.6
QL07p021067 Quercus lobata HOM05D004060 ORTHO05D004967 5.1e-43 179.1 301 66.8
Haze_19884 Corylus avellana HOM05D004060 ORTHO05D004967 3.3e-42 176.4 300 61.7
Haze_19892 Corylus avellana HOM05D004060 ORTHO05D004967 4.3e-42 176.0 300 61.7
vmacro22363 Vaccinium macrocarpon HOM05D004060 ORTHO05D004967 5.6e-42 175.6 283 64.7
Hma1.2p1_0696F.1_g204640 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 9.5e-42 174.9 300 65.0
CSS0022151 Camellia sinensis var. sinensis HOM05D004060 ORTHO05D004967 3.6e-41 172.9 307 63.5
Cfa016842 Carpinus fangiana HOM05D004060 ORTHO05D004967 3.6e-41 172.9 302 61.6
CiPaw.10G032000 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.1e-40 171.4 301 62.8
Nitab4.5_0002841g0040 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.4e-40 170.2 305 59.7
Dinv02134 Davidia involucrata HOM05D004060 ORTHO05D004967 6.8e-40 168.7 299 63.2
PGR004G1680 Punica granatum HOM05D004060 ORTHO05D004967 6.8e-40 168.7 307 60.9
Ciclev10005594m.g Citrus clementina HOM05D004060 ORTHO05D004967 1.5e-39 167.5 298 61.1
TAR369G1158 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.5e-39 167.5 301 62.8
Dinv02133 Davidia involucrata HOM05D004060 ORTHO05D004967 2.0e-39 167.2 301 64.5
Peaxi162Scf01287g00012 Petunia axillaris HOM05D004060 ORTHO05D004967 2.6e-39 166.8 262 65.3
Nitab4.5_0001509g0060 Nicotiana tabacum HOM05D004060 ORTHO05D004967 7.6e-39 165.2 298 61.1
ECA248G2911 Erigeron canadensis HOM05D004060 ORTHO05D004967 1.3e-38 164.5 292 62.0
TAR057G0003 Trochodendron aralioides HOM05D004060 ORTHO05D004967 1.7e-38 164.1 284 64.4
Oeu033785.1 Olea europaea HOM05D004060 ORTHO05D004967 4.9e-38 162.5 281 60.9
ClCG10G016620 Citrullus lanatus HOM05D004060 ORTHO05D004967 6.4e-38 162.2 285 60.7
PGSC0003DMG400023721 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.4e-37 161.0 289 62.3
Cc06_g16910 Coffea canephora HOM05D004060 ORTHO05D004967 1.9e-37 160.6 304 60.5
Nitab4.5_0000733g0190 Nicotiana tabacum HOM05D004060 ORTHO05D004967 2.4e-37 160.2 282 63.8
Cpa.g.sc92.28 Carica papaya HOM05D004060 ORTHO05D004967 4.2e-37 159.5 293 47.8
Sabra06G0037600 Salix brachista HOM05D004060 ORTHO05D004967 7.1e-37 158.7 298 61.7
Potri.016G054400 Populus trichocarpa HOM05D004060 ORTHO05D004967 9.2e-37 158.3 293 62.5
Rhsim03G0018200 Rhododendron simsii HOM05D004060 ORTHO05D004967 2.1e-36 157.1 281 63.3
VMungo1383G2713 Vigna mungo HOM05D004060 ORTHO05D004967 2.7e-36 156.8 290 61.0
Nitab4.5_0001663g0020 Nicotiana tabacum HOM05D004060 ORTHO05D004967 3.5e-36 156.4 278 64.0
Thecc.05G159200 Theobroma cacao HOM05D004060 ORTHO05D004967 4.6e-36 156.0 306 61.1
MSTRG.6438 Avicennia marina HOM05D004060 ORTHO05D004967 6.0e-36 155.6 301 57.8
Oeu064312.1 Olea europaea HOM05D004060 ORTHO05D004967 7.8e-36 155.2 304 51.6
Potri.006G053200 Populus trichocarpa HOM05D004060 ORTHO05D004967 1.7e-35 154.1 288 63.9
Lsat_1_v5_gn_5_162320 Lactuca sativa HOM05D004060 ORTHO05D004967 3.0e-35 153.3 287 60.6
Sopen10g030840 Solanum pennellii HOM05D004060 ORTHO05D004967 3.0e-35 153.3 279 62.4
CANSAT80G2886 Cannabis sativa HOM05D004060 ORTHO05D004967 5.1e-35 152.5 291 61.2
Phvul.001G135500 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 5.1e-35 152.5 214 52.3
Aqoxy1G00285 Aquilegia oxysepala HOM05D004060 ORTHO05D004967 1.1e-34 151.4 301 58.1
MELO3C009714.2 Cucumis melo HOM05D004060 ORTHO05D004967 2.5e-34 150.2 301 56.8
DCAR_013590 Daucus carota HOM05D004060 ORTHO05D004967 4.3e-34 149.4 295 62.0
Dinv18064 Davidia involucrata HOM05D004060 ORTHO05D004967 4.3e-34 149.4 219 53.0
CsaV3_3G039720 Cucumis sativus L. HOM05D004060 ORTHO05D004967 5.6e-34 149.1 288 59.0
Gohir.A11G312000 Gossypium hirsutum HOM05D004060 ORTHO05D004967 5.6e-34 149.1 283 62.2
Duzib128G1686 Durio zibethinus HOM05D004060 ORTHO05D004967 9.6e-34 148.3 305 55.4
CAN.G128.15 Capsicum annuum HOM05D004060 ORTHO05D004967 1.2e-33 147.9 278 61.9
COL.COLO4_28207 Corchorus olitorius HOM05D004060 ORTHO05D004967 1.6e-33 147.5 296 60.8
Eucgr.A02379 Eucalyptus grandis HOM05D004060 ORTHO05D004967 1.6e-33 147.5 277 62.5
Manes.08G049300 Manihot esculenta HOM05D004060 ORTHO05D004967 1.6e-33 147.5 286 63.6
Actinidia09345 Actinidia chinensis HOM05D004060 ORTHO05D004967 2.1e-33 147.1 304 57.9
Gohir.A11G312100 Gossypium hirsutum HOM05D004060 ORTHO05D004967 3.6e-33 146.4 280 62.1
Solyc04g015520.3 Solanum lycopersicum HOM05D004060 ORTHO05D004967 6.2e-33 145.6 296 59.8
Medtr1g052560 Medicago truncatula HOM05D004060 ORTHO05D004967 8.1e-33 145.2 307 56.0
Lju124C36T16 Lonicera japonica HOM05D004060 ORTHO05D004967 2.4e-32 143.7 220 50.9
TWI53G1485 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.4e-32 143.7 294 59.5
Nn2g15346 Nelumbo nucifera HOM05D004060 ORTHO05D004967 5.3e-32 142.5 218 50.0
Gohir.D11G328600 Gossypium hirsutum HOM05D004060 ORTHO05D004967 6.9e-32 142.1 280 61.8
Gorai.007G359900 Gossypium raimondii HOM05D004060 ORTHO05D004967 6.9e-32 142.1 280 61.8
MSTRG.19874 Avicennia marina HOM05D004060 ORTHO05D004967 1.5e-31 141.0 301 55.8
TPR.G21399 Trifolium pratense HOM05D004060 ORTHO05D004967 1.5e-31 141.0 304 56.9
Manes.09G024700 Manihot esculenta HOM05D004060 ORTHO05D004967 2.0e-31 140.6 283 61.5
TWI74G0684 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 2.6e-31 140.2 291 57.0
Atru.chr1.1058 Acer truncatum HOM05D004060 ORTHO05D004967 3.4e-31 139.8 206 50.0
Duzib106G1229 Durio zibethinus HOM05D004060 ORTHO05D004967 3.4e-31 139.8 285 61.4
MBI02_g05658_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 4.4e-31 139.4 288 51.0
Migut.J01771 Erythranthe guttata HOM05D004060 ORTHO05D004967 9.9e-31 138.3 276 61.2
Psat3g079320 Pisum sativum HOM05D004060 ORTHO05D004967 9.9e-31 138.3 293 60.4
arahy.Tifrunner.gnm1.ann1.L89JBM Arachis hypogaea HOM05D004060 ORTHO05D004967 2.9e-30 136.7 323 56.0
Actinidia24529 Actinidia chinensis HOM05D004060 ORTHO05D004967 3.8e-30 136.3 227 48.0
Medtr7g091990 Medicago truncatula HOM05D004060 ORTHO05D004967 6.4e-30 135.6 287 59.6
PSO339G1536 Papaver somniferum HOM05D004060 ORTHO05D004967 8.4e-30 135.2 299 55.5
Phvul.007G253600 Phaseolus vulgaris HOM05D004060 ORTHO05D004967 8.4e-30 135.2 312 55.1
PGSC0003DMG400027238 Solanum tuberosum HOM05D004060 ORTHO05D004967 1.1e-29 134.8 300 56.7
Sopen04g007590 Solanum pennellii HOM05D004060 ORTHO05D004967 1.4e-29 134.4 305 57.0
TPR.G3730 Trifolium pratense HOM05D004060 ORTHO05D004967 3.2e-29 133.3 287 58.5
Duzib093G0278 Durio zibethinus HOM05D004060 ORTHO05D004967 7.1e-29 132.1 207 49.8
Lalb_Chr20g0110781 Lupinus albus HOM05D004060 ORTHO05D004967 3.5e-28 129.8 314 55.7
Sed0004660 Sechium edule HOM05D004060 ORTHO05D004967 6.0e-28 129.0 294 55.8
TAR633G1984 Trochodendron aralioides HOM05D004060 ORTHO05D004967 6.0e-28 129.0 292 56.8
Nn7g36226 Nelumbo nucifera HOM05D004060 ORTHO05D004967 1.0e-27 128.3 212 44.3
TWI77G1037 Tripterygium wilfordii HOM05D004060 ORTHO05D004967 1.3e-27 127.9 284 58.1
Lalb_Chr25g0287361 Lupinus albus HOM05D004060 ORTHO05D004967 2.3e-27 127.1 310 55.2
HanXRQChr10g0300071 Helianthus annuus HOM05D004060 ORTHO05D004967 6.6e-27 125.6 290 56.9
Hma1.2p1_0247F.1_g101840 Hydrangea macrophylla HOM05D004060 ORTHO05D004967 1.9e-26 124.0 293 54.9
CARHR167760 Cardamine hirsuta HOM05D004060 ORTHO05D004967 2.5e-26 123.6 283 56.2
HanXRQChr01g0008631 Helianthus annuus HOM05D004060 ORTHO05D004967 3.3e-26 123.2 279 57.7
SalBow6G3128 Salvia bowleyana HOM05D004060 ORTHO05D004967 5.6e-26 122.5 300 56.7
AL5G39120 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 7.3e-26 122.1 296 54.7
Glyma.19G141100 Glycine max HOM05D004060 ORTHO05D004967 7.3e-26 122.1 291 60.5
Sc13g0001870 Simmondsia chinensis HOM05D004060 ORTHO05D004967 1.3e-25 121.3 285 56.8
AT3G57540 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 2.1e-25 120.6 298 54.7
Peaxi162Scf00493g00316 Petunia axillaris HOM05D004060 ORTHO05D004967 2.8e-25 120.2 226 44.7
Ca_26888_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 3.6e-25 119.8 318 53.1
Glyma.02G182600 Glycine max HOM05D004060 ORTHO05D004967 4.8e-25 119.4 327 52.0
PSO384G1698 Papaver somniferum HOM05D004060 ORTHO05D004967 8.1e-25 118.6 221 43.9
CiPaw.09G036400 Carya illinoinensis HOM05D004060 ORTHO05D004967 1.8e-24 117.5 239 63.2
Ca_08471_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 4.0e-24 116.3 205 44.9
EL10Ac3g07036 Beta vulgaris HOM05D004060 ORTHO05D004967 5.3e-24 115.9 313 52.1
DCAR_020477 Daucus carota HOM05D004060 ORTHO05D004967 6.9e-24 115.5 285 54.4
Lj1g0010539 Lotus japonicus HOM05D004060 ORTHO05D004967 6.9e-24 115.5 308 55.2
C04p03110 Brassica napus HOM05D004060 ORTHO05D004967 9.0e-24 115.2 282 44.0
BolC4t21952H Brassica oleracea HOM05D004060 ORTHO05D004967 9.0e-24 115.2 282 44.0
Lsat_1_v5_gn_9_27220 Lactuca sativa HOM05D004060 ORTHO05D004967 9.0e-24 115.2 204 45.1
arahy.Tifrunner.gnm1.ann1.AM9K84 Arachis hypogaea HOM05D004060 ORTHO05D004967 2.0e-23 114.0 296 56.4
Carub.0005s2438 Capsella rubella HOM05D004060 ORTHO05D004967 2.0e-23 114.0 308 52.3
BcaNung07195 Brassica carinata HOM05D004060 ORTHO05D004967 3.4e-23 113.2 282 51.8
A05p02610 Brassica napus HOM05D004060 ORTHO05D004967 3.4e-23 113.2 282 50.7
Oeu017953.1 Olea europaea HOM05D004060 ORTHO05D004967 4.5e-23 112.8 288 46.2
VMungo0720G0143 Vigna mungo HOM05D004060 ORTHO05D004967 5.8e-23 112.5 302 54.0
Os07g0569100 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.3e-22 111.3 285 54.4
BraA05t19254Z Brassica rapa HOM05D004060 ORTHO05D004967 2.2e-22 110.5 300 49.0
Thhalv10017761m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 2.9e-22 110.2 296 52.4
BcaC07g40371 Brassica carinata HOM05D004060 ORTHO05D004967 1.4e-21 107.8 302 50.0
C08p33070 Brassica napus HOM05D004060 ORTHO05D004967 1.4e-21 107.8 302 50.0
BolC8t50907H Brassica oleracea HOM05D004060 ORTHO05D004967 1.4e-21 107.8 302 50.0
Glyma.03G138100 Glycine max HOM05D004060 ORTHO05D004967 2.4e-21 107.1 222 46.4
SGA_v2.0_scaffold69G23102 Striga asiatica HOM05D004060 ORTHO05D004967 2.4e-21 107.1 309 37.5
Sp5g05050 Schrenkiella parvula HOM05D004060 ORTHO05D004967 9.3e-21 105.1 296 51.0
ATR0332G033 Amborella trichopoda HOM05D004060 ORTHO05D004967 1.6e-20 104.4 281 53.0
CARHR136960 Cardamine hirsuta HOM05D004060 ORTHO05D004967 1.6e-20 104.4 295 43.7
MBI04_g36073_MAGBIO Magnolia biondii HOM05D004060 ORTHO05D004967 1.6e-20 104.4 293 33.1
THA.LOC104824453 Tarenaya hassleriana HOM05D004060 ORTHO05D004967 1.6e-20 104.4 302 50.3
AL4G40200 Arabidopsis lyrata HOM05D004060 ORTHO05D004967 2.7e-20 103.6 297 50.8
Aa31LG10G12370 Aethionema arabicum HOM05D004060 ORTHO05D004967 6.0e-20 102.4 297 52.2
arahy.Tifrunner.gnm1.ann1.GL61MB Arachis hypogaea HOM05D004060 ORTHO05D004967 6.0e-20 102.4 261 59.8
A09p50400 Brassica napus HOM05D004060 ORTHO05D004967 2.3e-19 100.5 302 49.0
Os03g0808300 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 3.0e-19 100.1 290 49.3
Thhalv10006130m.g Eutrema salsugineum HOM05D004060 ORTHO05D004967 3.9e-19 99.8 307 49.8
HPP92_019624 Vanilla planifolia HOM05D004060 ORTHO05D004967 1.5e-18 97.8 194 41.2
Zm00001eb107230 Zea mays HOM05D004060 ORTHO05D004967 2.5e-18 97.1 284 45.1
Zm00001eb324720 Zea mays HOM05D004060 ORTHO05D004967 3.3e-18 96.7 290 51.7
BraA09t40492Z Brassica rapa HOM05D004060 ORTHO05D004967 9.6e-18 95.1 302 48.7
Carub.0004s2418 Capsella rubella HOM05D004060 ORTHO05D004967 1.6e-17 94.4 292 51.0
CAN.G676.50 Capsicum annuum HOM05D004060 ORTHO05D004967 2.1e-17 94.0 284 53.2
ECA247G2970 Erigeron canadensis HOM05D004060 ORTHO05D004967 2.1e-17 94.0 174 46.6
BcaB02g07595 Brassica carinata HOM05D004060 ORTHO05D004967 2.8e-17 93.6 286 47.2
Sp4g24140 Schrenkiella parvula HOM05D004060 ORTHO05D004967 2.8e-17 93.6 213 38.5
AT2G41870 Arabidopsis thaliana HOM05D004060 ORTHO05D004967 3.7e-17 93.2 290 50.3
Lj2C380T14 Lonicera japonica HOM05D004060 ORTHO05D004967 1.1e-16 91.7 143 53.1
Os07g0208600 Oryza sativa ssp. japonica HOM05D004060 ORTHO05D004967 1.4e-16 91.3 287 47.7
Glyma.10G099400 Glycine max HOM05D004060 ORTHO05D004967 2.4e-16 90.5 306 49.0
Solyc10g080230.2 Solanum lycopersicum HOM05D004060 ORTHO05D004967 5.3e-16 89.4 146 46.6
BcaC07g40387 Brassica carinata HOM05D004060 ORTHO05D004967 1.2e-15 88.2 306 48.7
SalBow1G5147 Salvia bowleyana HOM05D004060 ORTHO05D004967 4.5e-15 86.3 297 49.5
Zm00001eb061820 Zea mays HOM05D004060 ORTHO05D004967 5.8e-15 85.9 205 37.6
Ca_29692_v3 Cicer arietinum L. HOM05D004060 ORTHO05D004967 7.6e-15 85.5 172 68.6
HanXRQChr05g0132091 Helianthus annuus HOM05D004060 ORTHO05D004967 2.2e-14 84.0 293 47.8
MSTRG.10823 Avicennia marina HOM05D004060 ORTHO05D004967 3.8e-14 83.2 289 38.8
HanXRQChr10g0300061 Helianthus annuus HOM05D004060 ORTHO05D004967 1.4e-13 81.3 126 49.2
ECA247G3737 Erigeron canadensis HOM05D003799 ORTHO05D001964 2.1e-12 77.4 158 45.6
arahy.Tifrunner.gnm1.ann1.49FMRE Arachis hypogaea HOM05D004060 ORTHO05D004967 3.5e-12 76.6 235 41.3
arahy.Tifrunner.gnm1.ann1.N3K66E Arachis hypogaea HOM05D003004 ORTHO05D004967 2.8e-09 67.0 37 86.5
Hund24724 Selenicereus undatus HOM05D004060 ORTHO05D004967 2.8e-09 67.0 288 35.8
unitig_8.g4575 Utricularia gibba HOM05D004060 ORTHO05D004967 1.8e-08 64.3 283 45.6
AUR62024421 Chenopodium quinoa HOM05D004060 ORTHO05D004967 4.0e-08 63.2 77 49.4
AUR62026012 Chenopodium quinoa HOM05D004060 ORTHO05D004967 2.0e-07 60.8 77 48.1
ECA236G0930 Erigeron canadensis HOM05D004060 ORTHO05D001964 3.4e-07 60.1 117 80.3
arahy.Tifrunner.gnm1.ann1.3TR3AL Arachis hypogaea HOM05D002100 ORTHO05D002310 2.2e-06 57.4 37 73.0


User provided reference genes

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