Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1067900 Malus domestica HOM05D002477 ORTHO05D001927 0.0e+00 1342.8 671 100.0
Prupe.7G066400 Prunus persica HOM05D002477 ORTHO05D001927 4.3e-236 821.6 626 69.3
RcHm_v2.0_Chr3g0481261 Rosa chinensis HOM05D002477 ORTHO05D001927 1.4e-170 604.0 686 51.2
FvH4_6g23300 Fragaria vesca HOM05D002477 ORTHO05D001927 4.3e-151 539.3 684 48.8
FAN09G0645 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.0e-149 532.7 684 48.2
FAN14G5266 Fragaria x ananassa HOM05D002477 ORTHO05D001927 5.4e-146 522.3 717 46.6
FAN02G1477 Fragaria x ananassa HOM05D002477 ORTHO05D001927 2.3e-144 516.9 685 47.2
FAN05G1216 Fragaria x ananassa HOM05D002477 ORTHO05D001927 3.4e-140 503.1 717 45.3
Prupe.5G223300 Prunus persica HOM05D002477 ORTHO05D001927 6.3e-86 322.8 430 47.2
QL07p021424 Quercus lobata HOM05D002477 ORTHO05D001927 5.9e-76 289.7 379 44.9
RcHm_v2.0_Chr5g0000181 Rosa chinensis HOM05D002477 ORTHO05D001927 2.5e-74 284.3 423 43.7
Cfa016857 Carpinus fangiana HOM05D002477 ORTHO05D001927 2.1e-65 254.6 459 37.3
CiPaw.09G035000 Carya illinoinensis HOM05D002477 ORTHO05D001927 2.3e-64 251.1 454 38.8
Cfa016856 Carpinus fangiana HOM05D002477 ORTHO05D001927 2.9e-62 244.2 451 36.8
MD06G1218200 Malus domestica HOM05D002477 ORTHO05D001927 3.7e-62 243.8 471 36.9
QL08p056700 Quercus lobata HOM05D002477 ORTHO05D001927 1.3e-59 235.3 356 43.3
CANSAT80G2456 Cannabis sativa HOM05D002477 ORTHO05D001927 1.6e-57 228.4 365 43.0
Dinv18078 Davidia involucrata HOM05D002477 ORTHO05D000502 3.6e-57 227.3 384 40.6
TAR629G1056 Trochodendron aralioides HOM05D002477 ORTHO05D001927 4.7e-57 226.9 373 41.0
Dinv24130 Davidia involucrata HOM05D002477 ORTHO05D001927 1.5e-55 221.9 406 38.7
Haze_19906 Corylus avellana HOM05D002477 ORTHO05D001927 5.8e-55 219.9 449 36.3
GSVIVG01033321001 Vitis vinifera HOM05D002477 ORTHO05D001927 7.5e-55 219.5 393 39.4
FAN13G2553 Fragaria x ananassa HOM05D002477 ORTHO05D001927 4.9e-54 216.9 411 37.2
vmacro09089 Vaccinium macrocarpon HOM05D002477 ORTHO05D001927 3.2e-53 214.2 403 37.5
FvH4_5g11840 Fragaria vesca HOM05D002477 ORTHO05D001927 7.1e-53 213.0 414 38.2
FAN18G0342 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.2e-52 212.2 414 37.9
FAN18G4344 Fragaria x ananassa HOM05D002477 ORTHO05D001927 1.2e-52 212.2 414 37.9
Haze_12555 Corylus avellana HOM05D002477 ORTHO05D001927 1.3e-51 208.8 419 36.8
Rhsim04G0100400 Rhododendron simsii HOM05D002477 ORTHO05D001927 1.3e-51 208.8 382 37.7
FAN08G2173 Fragaria x ananassa HOM05D002477 ORTHO05D001927 3.0e-51 207.6 414 36.5
Actinidia17246 Actinidia chinensis HOM05D002477 ORTHO05D001927 9.5e-50 202.6 444 34.5
Potri.016G053300 Populus trichocarpa HOM05D002477 ORTHO05D001927 1.4e-48 198.7 446 35.4
CSS0020089 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 2.3e-48 198.0 384 36.5
Ciclev10004349m.g Citrus clementina HOM05D002477 ORTHO05D001927 4.0e-48 197.2 402 36.6
Actinidia38563 Actinidia chinensis HOM05D002477 ORTHO05D001927 1.5e-47 195.3 382 36.1
CSS0026110 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 4.4e-47 193.7 448 34.2
CSS0044202 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.3e-46 192.2 439 33.7
Sabra16G0056600 Salix brachista HOM05D002477 ORTHO05D001927 7.1e-45 186.4 420 35.2
Manes.09G026400 Manihot esculenta HOM05D002477 ORTHO05D001927 3.5e-44 184.1 364 34.6
Thecc.05G161200 Theobroma cacao HOM05D002477 ORTHO05D001927 6.0e-44 183.3 371 33.7
Sabra06G0038500 Salix brachista HOM05D002477 ORTHO05D000502 1.3e-43 182.2 416 34.4
ClCG10G017130 Citrullus lanatus HOM05D002477 ORTHO05D001927 2.5e-42 177.9 397 35.3
Duzib093G0277 Durio zibethinus HOM05D002477 ORTHO05D001927 1.5e-39 168.7 357 34.7
Duzib106G0995 Durio zibethinus HOM05D002477 ORTHO05D001927 4.4e-39 167.2 402 32.8
MELO3C009670.2 Cucumis melo HOM05D002477 ORTHO05D001927 7.6e-39 166.4 279 42.7
Thecc.09G365200 Theobroma cacao HOM05D002477 ORTHO05D001927 7.6e-39 166.4 419 31.5
Ca_26695_v3 Cicer arietinum L. HOM05D002477 ORTHO05D001927 1.7e-38 165.2 359 31.8
Lj5g0008192 Lotus japonicus HOM05D002477 ORTHO05D001927 2.4e-37 161.4 336 35.1
Phvul.007G255000 Phaseolus vulgaris HOM05D002477 ORTHO05D001927 5.4e-37 160.2 473 30.0
CSS0018822 Camellia sinensis var. sinensis HOM05D002477 ORTHO05D001927 1.2e-36 159.1 432 31.9
Sed0021406 Sechium edule HOM05D002477 ORTHO05D001927 1.6e-36 158.7 367 34.9
CsaV3_3G039260 Cucumis sativus L. HOM05D002477 ORTHO05D001927 2.1e-36 158.3 305 39.0
Eucgr.C04382 Eucalyptus grandis HOM05D002477 ORTHO05D001927 6.0e-36 156.8 321 32.1
MD12G1067800 Malus domestica HOM05D002477 ORTHO05D001927 6.6e-35 153.3 100 81.0
Psat6g126680 Pisum sativum HOM05D002477 ORTHO05D001927 3.3e-34 151.0 408 30.6
CiPaw.10G129800 Carya illinoinensis HOM05D002477 ORTHO05D001927 5.6e-34 150.2 314 37.3
Lalb_Chr20g0110841 Lupinus albus HOM05D002477 ORTHO05D001927 1.3e-33 149.1 384 29.4
arahy.Tifrunner.gnm1.ann1.C30FA8 Arachis hypogaea HOM05D002477 ORTHO05D001927 4.0e-32 144.1 435 29.7
Cpa.g.sc92.17 Carica papaya HOM05D002477 ORTHO05D001927 2.6e-31 141.4 389 32.9
arahy.Tifrunner.gnm1.ann1.PZF5CH Arachis hypogaea HOM05D002477 ORTHO05D001927 4.4e-31 140.6 376 30.6
Oeu033163.1 Olea europaea HOM05D002477 ORTHO05D001927 3.8e-30 137.5 266 36.1
Nitab4.5_0004532g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.2e-28 132.5 166 42.2
arahy.Tifrunner.gnm1.ann1.62FNLU Arachis hypogaea HOM05D002477 ORTHO05D001927 1.0e-27 129.4 434 28.6
arahy.Tifrunner.gnm1.ann1.K0YCIR Arachis hypogaea HOM05D002477 ORTHO05D001927 1.0e-27 129.4 434 28.6
CANSAT80G0265 Cannabis sativa HOM05D002477 ORTHO05D001927 1.0e-27 129.4 163 46.0
Nitab4.5_0005559g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 1.0e-27 129.4 166 42.2
Gorai.006G138200 Gossypium raimondii HOM05D002477 ORTHO05D001927 2.3e-27 128.3 322 33.5
CAN.G128.17 Capsicum annuum HOM05D002477 ORTHO05D001927 3.9e-27 127.5 267 33.0
PGSC0003DMG400023718 Solanum tuberosum HOM05D002477 ORTHO05D001927 5.1e-27 127.1 154 40.9
Hund24730 Selenicereus undatus HOM05D002477 ORTHO05D001927 6.6e-27 126.7 335 30.7
Gohir.D09G120700 Gossypium hirsutum HOM05D002477 ORTHO05D001927 8.7e-27 126.3 322 33.2
Gohir.A09G123900 Gossypium hirsutum HOM05D002477 ORTHO05D001927 1.5e-26 125.6 411 30.9
Peaxi162Scf00398g00011 Petunia axillaris HOM05D002477 ORTHO05D001927 1.6e-25 122.1 351 32.2
Cc06_g16670 Coffea canephora HOM05D002477 ORTHO05D001927 2.8e-25 121.3 518 28.4
ECA236G0694 Erigeron canadensis HOM05D002477 ORTHO05D001927 4.8e-25 120.6 166 40.4
Sc25g0005240 Simmondsia chinensis HOM05D002477 ORTHO05D001927 1.1e-24 119.4 186 43.5
PGR142G3066 Punica granatum HOM05D002477 ORTHO05D001927 1.4e-24 119.0 398 28.4
PGSC0003DMG400018039 Solanum tuberosum HOM05D002477 ORTHO05D001927 1.4e-24 119.0 264 31.8
TPR.G10410 Trifolium pratense HOM05D002477 ORTHO05D001927 1.4e-24 119.0 452 26.8
Migut.D00049 Erythranthe guttata HOM05D002477 ORTHO05D001927 1.8e-24 118.6 163 40.5
Migut.D01681 Erythranthe guttata HOM05D002477 ORTHO05D001927 2.4e-24 118.2 168 42.9
THA.LOC104821902 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 2.4e-24 118.2 226 35.0
HanXRQChr05g0132191 Helianthus annuus HOM05D002477 ORTHO05D001927 5.3e-24 117.1 274 33.2
Sopen10g030860 Solanum pennellii HOM05D002477 ORTHO05D001927 6.9e-24 116.7 260 32.3
Glyma.04G004700 Glycine max HOM05D002477 ORTHO05D001927 1.2e-23 115.9 159 42.1
PGR004G2549 Punica granatum HOM05D002477 ORTHO05D001927 1.5e-23 115.5 169 40.8
ECA247G2430 Erigeron canadensis HOM05D002477 ORTHO05D001927 2.0e-23 115.2 366 27.3
Aa31LG10G8430 Aethionema arabicum HOM05D002477 ORTHO05D001927 2.6e-23 114.8 198 36.9
Nitab4.5_0002220g0010 Nicotiana tabacum HOM05D002477 ORTHO05D001927 3.4e-23 114.4 167 38.9
Nn3g19128 Nelumbo nucifera HOM05D002477 ORTHO05D001927 4.5e-23 114.0 164 41.5
EL10Ac3g07024 Beta vulgaris HOM05D002477 ORTHO05D001927 5.8e-23 113.6 153 45.1
Nitab4.5_0005201g0030 Nicotiana tabacum HOM05D002477 ORTHO05D001927 9.9e-23 112.8 308 29.2
PGSC0003DMG400011962 Solanum tuberosum HOM05D002477 ORTHO05D001927 9.9e-23 112.8 234 35.9
Ah.04g151880 Amaranthus hybridus HOM05D002477 ORTHO05D001927 2.2e-22 111.7 291 32.0
Peaxi162Scf00650g00229 Petunia axillaris HOM05D002477 ORTHO05D001927 2.2e-22 111.7 253 36.0
AUR62024404 Chenopodium quinoa HOM05D002477 ORTHO05D001927 4.9e-22 110.5 335 30.4
HanXRQChr15g0491211 Helianthus annuus HOM05D002477 ORTHO05D001927 4.9e-22 110.5 205 36.6
MSTRG.9604 Avicennia marina HOM05D002477 ORTHO05D001927 1.1e-21 109.4 414 27.1
CARHR060680 Cardamine hirsuta HOM05D002477 ORTHO05D001927 2.4e-21 108.2 126 45.2
AUR62025998 Chenopodium quinoa HOM05D002477 ORTHO05D001927 2.4e-21 108.2 344 30.5
SHI33651 Sapria himalayana HOM05D002477 ORTHO05D001927 3.2e-21 107.8 141 37.6
THA.LOC104825577 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 4.2e-21 107.5 180 37.2
CAN.G77.2 Capsicum annuum HOM05D002477 ORTHO05D001927 5.4e-21 107.1 375 28.8
AT1G68030 Arabidopsis thaliana HOM05D002477 ORTHO05D001927 7.1e-21 106.7 124 45.2
Thhalv10019541m.g Eutrema salsugineum HOM05D002477 ORTHO05D001927 9.3e-21 106.3 129 44.2
Sp5g23040 Schrenkiella parvula HOM05D002477 ORTHO05D001927 1.2e-20 105.9 127 45.7
Carub.0002s1451 Capsella rubella HOM05D002477 ORTHO05D001927 1.6e-20 105.5 124 44.4
Ah.04g151870 Amaranthus hybridus HOM05D002477 ORTHO05D001927 2.7e-20 104.8 140 40.7
SalBow7G2975 Salvia bowleyana HOM05D002477 ORTHO05D001927 7.9e-20 103.2 215 34.9
THA.LOC104807903 Tarenaya hassleriana HOM05D002477 ORTHO05D001927 7.9e-20 103.2 260 33.5
Sopen03g016980 Solanum pennellii HOM05D002477 ORTHO05D001927 1.0e-19 102.8 232 34.5
AL2G26890 Arabidopsis lyrata HOM05D002477 ORTHO05D001927 3.0e-19 101.3 124 43.5
Medtr2g005950 Medicago truncatula HOM05D002477 ORTHO05D001927 3.0e-19 101.3 400 27.8
Solyc03g063720.4 Solanum lycopersicum HOM05D002477 ORTHO05D001927 1.1e-18 99.4 383 27.7
SGA_v2.0_scaffold7G04035 Striga asiatica HOM05D001894 ORTHO05D001752 2.5e-18 98.2 158 37.3
COL.COLO4_28664 Corchorus olitorius HOM05D002477 ORTHO05D001927 9.6e-18 96.3 232 31.5
A07p34530 Brassica napus HOM05D002477 ORTHO05D001927 2.1e-17 95.1 155 37.4
ATR0757G170 Amborella trichopoda HOM05D002477 ORTHO05D001927 4.0e-16 90.9 179 35.8
AT1G14770 Arabidopsis thaliana HOM05D010589 ORTHO05D001927 4.0e-16 90.9 165 35.2
Cfa016855 Carpinus fangiana HOM05D002477 ORTHO05D001927 4.0e-16 90.9 319 29.2
AL1G26800 Arabidopsis lyrata HOM05D010589 ORTHO05D001927 5.3e-16 90.5 144 37.5
THA.LOC104805090 Tarenaya hassleriana HOM05D010589 ORTHO05D001927 6.9e-16 90.1 132 34.8
PSO063G1512 Papaver somniferum HOM05D002477 ORTHO05D001927 9.0e-16 89.7 186 31.7
Lsat_1_v5_gn_8_80200 Lactuca sativa HOM05D000424 ORTHO05D000355 1.2e-15 89.4 249 30.1
C06p41990 Brassica napus HOM05D002477 ORTHO05D001927 1.5e-15 89.0 125 40.0
BolC6t39229H Brassica oleracea HOM05D002477 ORTHO05D001927 1.5e-15 89.0 125 40.0
Lsat_1_v5_gn_9_27420 Lactuca sativa HOM05D002477 ORTHO05D001927 1.5e-15 89.0 178 33.1
Sc19g0006700 Simmondsia chinensis HOM05D002477 ORTHO05D001927 2.0e-15 88.6 235 33.2
BcaB03g15137 Brassica carinata HOM05D002477 ORTHO05D001927 3.4e-15 87.8 237 32.1
BcaNung05110 Brassica carinata HOM05D002477 ORTHO05D001927 3.4e-15 87.8 237 32.1
A06p10830 Brassica napus HOM05D010589 ORTHO05D001927 4.5e-15 87.4 128 39.1
Gohir.D12G101750 Gossypium hirsutum HOM05D002477 ORTHO05D001927 4.5e-15 87.4 219 32.9
Gorai.008G110900 Gossypium raimondii HOM05D002477 ORTHO05D001927 4.5e-15 87.4 219 32.9
Gohir.A12G098550 Gossypium hirsutum HOM05D002477 ORTHO05D001927 7.6e-15 86.7 150 38.0
BraA06t24261Z Brassica rapa HOM05D010589 ORTHO05D001927 1.3e-14 85.9 131 38.2
Sp1g13210 Schrenkiella parvula HOM05D010589 ORTHO05D001927 2.2e-14 85.1 128 35.9
Carub.0001s1457 Capsella rubella HOM05D010589 ORTHO05D001927 4.9e-14 84.0 144 36.8
MBI12_g00013_MAGBIO Magnolia biondii HOM05D002477 ORTHO05D001927 6.5e-14 83.6 200 30.5
BcaB02g06547 Brassica carinata HOM05D010589 ORTHO05D001927 8.4e-14 83.2 129 37.2
Sp1g41390 Schrenkiella parvula HOM05D010589 ORTHO05D001927 8.4e-14 83.2 156 34.6
HPP92_005494 Vanilla planifolia HOM05D002477 ORTHO05D001927 2.5e-13 81.6 157 32.5
TWI77G0015 Tripterygium wilfordii HOM05D002477 ORTHO05D001927 3.2e-13 81.3 157 33.1
Thhalv10009755m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 5.5e-13 80.5 128 32.8
BcaC08g46229 Brassica carinata HOM05D002477 ORTHO05D001927 1.2e-12 79.3 163 33.7
CDE02G2179 Ceratophyllum demersum HOM05D002477 ORTHO05D001927 1.2e-12 79.3 132 34.8
C05p12720 Brassica napus HOM05D010589 ORTHO05D001927 2.1e-12 78.6 130 35.4
CARHR015310 Cardamine hirsuta HOM05D010589 ORTHO05D001927 3.5e-12 77.8 128 33.6
BcaC05g25396 Brassica carinata HOM05D010589 ORTHO05D001927 1.0e-11 76.3 128 34.4
Manes.14G007105 Manihot esculenta HOM05D002477 ORTHO05D001927 1.3e-11 75.9 285 28.8
Potri.006G054401 Populus trichocarpa HOM05D002477 ORTHO05D001927 1.3e-11 75.9 284 29.9
C08p00400 Brassica napus HOM05D004536 ORTHO05D005628 1.8e-11 75.5 128 35.9
BolC8t46839H Brassica oleracea HOM05D004536 ORTHO05D005628 1.8e-11 75.5 128 35.9
BcaC07g40425 Brassica carinata HOM05D010589 ORTHO05D001927 8.7e-11 73.2 130 34.6
Thhalv10011681m.g Eutrema salsugineum HOM05D010589 ORTHO05D001927 1.1e-10 72.8 126 34.1
Aa31LG1G320 Aethionema arabicum HOM05D010589 ORTHO05D001927 1.9e-10 72.0 128 30.5
Eucgr.L02969 Eucalyptus grandis HOM05D002477 ORTHO05D001927 1.9e-10 72.0 98 40.8
Eucgr.H02945 Eucalyptus grandis HOM05D002477 ORTHO05D001927 5.7e-10 70.5 96 40.6
A08p37490 Brassica napus HOM05D004536 ORTHO05D005628 2.1e-09 68.6 128 32.8
BraA08t35647Z Brassica rapa HOM05D004536 ORTHO05D005628 2.1e-09 68.6 128 32.8
Aqoxy3G04102 Aquilegia oxysepala HOM05D002477 ORTHO05D001927 8.2e-09 66.6 155 28.4
DCAR_009054 Daucus carota HOM05D002477 ORTHO05D001927 6.9e-08 63.5 194 30.4
DCAR_020474 Daucus carota HOM05D002477 ORTHO05D001927 1.2e-07 62.8 392 25.0
Sed0017433 Sechium edule HOM05D002477 ORTHO05D001927 2.0e-07 62.0 270 29.6


User provided reference genes

Program Settings