Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1067100 Malus domestica HOM05D007490 ORTHO05D008750 5.3e-66 254.2 128 100.0
MD12G1073500 Malus domestica HOM05D007490 ORTHO05D008750 2.1e-22 109.4 106 57.5
Hma1.2p1_2266F.1_g318420 Hydrangea macrophylla HOM05D007490 ORTHO05D008750 2.9e-16 89.0 102 49.0
RcHm_v2.0_Chr3g0482221 Rosa chinensis HOM05D007490 ORTHO05D008750 2.5e-15 85.9 76 57.9
Prupe.7G061400 Prunus persica HOM05D007490 ORTHO05D008750 4.2e-15 85.1 100 50.0
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 7.2e-15 84.3 84 53.6
Sed0009481 Sechium edule HOM05D007490 ORTHO05D008750 2.1e-14 82.8 98 48.0
Atru.chr1.1094 Acer truncatum HOM05D007490 ORTHO05D008750 6.1e-14 81.3 62 61.3
FvH4_6g23771 Fragaria vesca HOM05D007490 ORTHO05D008750 6.1e-14 81.3 75 57.3
FAN14G3182 Fragaria x ananassa HOM05D007490 ORTHO05D008750 6.1e-14 81.3 71 59.2
Eucgr.A02350 Eucalyptus grandis HOM05D007490 ORTHO05D008750 8.0e-14 80.9 87 54.0
Sc13g0001780 Simmondsia chinensis HOM05D007490 ORTHO05D008750 1.4e-13 80.1 92 52.2
Solyc04g015730.3 Solanum lycopersicum HOM05D007490 ORTHO05D008750 1.4e-13 80.1 81 54.3
Sopen04g007810 Solanum pennellii HOM05D007490 ORTHO05D008750 1.4e-13 80.1 81 54.3
Dinv39599 Davidia involucrata HOM05D007490 ORTHO05D008750 4.0e-13 78.6 71 59.2
Thecc.05G153900 Theobroma cacao HOM05D007490 ORTHO05D008750 5.2e-13 78.2 110 46.4
Ciclev10005740m.g Citrus clementina HOM05D007490 ORTHO05D008750 6.8e-13 77.8 62 59.7
Nitab4.5_0005611g0010 Nicotiana tabacum HOM05D007490 ORTHO05D008750 8.8e-13 77.4 80 53.8
FAN09G1636 Fragaria x ananassa HOM05D007490 ORTHO05D008750 1.2e-12 77.0 75 54.7
AUR62024445 Chenopodium quinoa HOM05D007490 ORTHO05D008750 1.5e-12 76.6 61 62.3
ClCG00G005730 Citrullus lanatus HOM05D007490 ORTHO05D008750 2.0e-12 76.3 79 50.6
Glyma.02G183950 Glycine max HOM05D007490 ORTHO05D008750 2.6e-12 75.9 83 53.0
QL07p000297 Quercus lobata HOM05D007490 ORTHO05D008750 2.6e-12 75.9 87 49.4
AUR62026035 Chenopodium quinoa HOM05D007490 ORTHO05D008750 5.7e-12 74.7 60 61.7
COL.COLO4_28277 Corchorus olitorius HOM05D007490 ORTHO05D008750 5.7e-12 74.7 108 43.5
Nn7g36272 Nelumbo nucifera HOM05D007490 ORTHO05D008750 7.5e-12 74.3 94 44.7
Duzib128G0116 Durio zibethinus HOM05D007490 ORTHO05D008750 1.3e-11 73.6 110 45.5
CsaV3_4G011720 Cucumis sativus L. HOM05D007490 ORTHO05D008750 1.7e-11 73.2 81 48.1
Gohir.A11G312500 Gossypium hirsutum HOM05D007490 ORTHO05D008750 1.7e-11 73.2 77 55.8
Gohir.D11G329000 Gossypium hirsutum HOM05D007490 ORTHO05D008750 1.7e-11 73.2 77 55.8
Gorai.007G360400 Gossypium raimondii HOM05D007490 ORTHO05D008750 1.7e-11 73.2 77 55.8
arahy.Tifrunner.gnm1.ann1.M65R33 Arachis hypogaea HOM05D007490 ORTHO05D008750 3.7e-11 72.0 56 64.3
arahy.Tifrunner.gnm1.ann1.QGQ977 Arachis hypogaea HOM05D007490 ORTHO05D008750 3.7e-11 72.0 56 64.3
PGR004G2251 Punica granatum HOM05D007490 ORTHO05D008750 4.8e-11 71.6 59 62.7
TWI74G0148 Tripterygium wilfordii HOM05D007490 ORTHO05D008750 8.3e-11 70.9 80 51.2
Cc06_g17080 Coffea canephora HOM05D007490 ORTHO05D008750 1.1e-10 70.5 64 59.4
Potri.006G050900 Populus trichocarpa HOM05D007490 ORTHO05D008750 1.1e-10 70.5 58 62.1
Rhsim03G0022200 Rhododendron simsii HOM05D007490 ORTHO05D008750 1.1e-10 70.5 105 43.8
ECA236G0950 Erigeron canadensis HOM05D007490 ORTHO05D008750 1.4e-10 70.1 57 59.6
Rhsim03G0021300 Rhododendron simsii HOM05D007490 ORTHO05D008750 1.4e-10 70.1 106 44.3
Aqoxy3G01571 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 1.8e-10 69.7 109 39.4
Aqoxy5G00272 Aquilegia oxysepala HOM05D007490 ORTHO05D008750 1.8e-10 69.7 72 52.8
Sopen10g030750 Solanum pennellii HOM05D015445 ORTHO05D008750 1.8e-10 69.7 60 58.3
CANSAT80G2830 Cannabis sativa HOM05D007490 ORTHO05D008750 2.4e-10 69.3 102 44.1
A03p23430 Brassica napus HOM05D007490 ORTHO05D008750 4.1e-10 68.6 78 48.7
BraA03t11560Z Brassica rapa HOM05D007490 ORTHO05D008750 4.1e-10 68.6 78 48.7
DCAR_013600 Daucus carota HOM05D007490 ORTHO05D008750 7.0e-10 67.8 90 38.9
unitig_0.g2659 Utricularia gibba HOM05D007490 ORTHO05D008750 7.0e-10 67.8 75 52.0
Thhalv10017790m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 9.1e-10 67.4 77 46.8
Manes.09G021650 Manihot esculenta HOM05D007490 ORTHO05D008750 9.1e-10 67.4 60 58.3
Lsat_1_v5_gn_8_81320 Lactuca sativa HOM05D007490 ORTHO05D008750 2.0e-09 66.2 78 46.2
Thhalv10006439m.g Eutrema salsugineum HOM05D007490 ORTHO05D008750 4.5e-09 65.1 81 48.1
SHI15744 Sapria himalayana HOM05D007490 ORTHO05D008750 4.5e-09 65.1 62 58.1
Sabra06G0035600 Salix brachista HOM05D007490 ORTHO05D008750 7.7e-09 64.3 58 60.3
Ah.04g151770 Amaranthus hybridus HOM05D007490 ORTHO05D008750 1.0e-08 63.9 66 53.0
Migut.K00089 Erythranthe guttata HOM05D007490 ORTHO05D008750 1.7e-08 63.2 60 58.3
BcaNung06245 Brassica carinata HOM05D007490 ORTHO05D008750 2.2e-08 62.8 76 44.7
SalBow3G0554 Salvia bowleyana HOM05D007490 ORTHO05D008750 2.2e-08 62.8 62 54.8
BcaC07g40379 Brassica carinata HOM05D007490 ORTHO05D008750 3.8e-08 62.0 105 36.2
SGA_v2.0_scaffold273G46437 Striga asiatica HOM05D007490 ORTHO05D008750 3.8e-08 62.0 71 50.7
C03p27950 Brassica napus HOM05D007490 ORTHO05D008750 5.0e-08 61.6 73 45.2
BolC3t15167H Brassica oleracea HOM05D007490 ORTHO05D008750 5.0e-08 61.6 73 45.2
PSO339G3404 Papaver somniferum HOM05D007490 ORTHO05D008750 6.5e-08 61.2 58 55.2
A09p50330 Brassica napus HOM05D007490 ORTHO05D008750 1.1e-07 60.5 103 38.8
Sp5g05160 Schrenkiella parvula HOM05D007490 ORTHO05D008750 3.2e-07 58.9 60 53.3
Cre06.g296900 Chlamydomonas reinhardtii HOM05D017655 ORTHO05D008750 4.2e-07 58.5 60 48.3
BcaC07g40383 Brassica carinata HOM05D007490 ORTHO05D008750 9.4e-07 57.4 89 38.2
CARHR167640 Cardamine hirsuta HOM05D007490 ORTHO05D008750 9.4e-07 57.4 104 37.5
Os07g0656300 Oryza sativa ssp. japonica HOM05D022794 ORTHO05D023027 9.4e-07 57.4 65 49.2
SGA_v2.0_scaffold94G28485 Striga asiatica HOM05D007490 ORTHO05D008750 9.4e-07 57.4 81 46.9
Carub.0005s2428 Capsella rubella HOM05D007490 ORTHO05D008750 1.2e-06 57.0 75 44.0
PSO384G3220 Papaver somniferum HOM05D007490 ORTHO05D008750 1.2e-06 57.0 61 52.5
AL5G39010 Arabidopsis lyrata HOM05D007490 ORTHO05D008750 2.1e-06 56.2 60 50.0
AT3G57440 Arabidopsis thaliana HOM05D007490 ORTHO05D008750 2.1e-06 56.2 60 50.0
Cre11.g467641 Chlamydomonas reinhardtii HOM05D017655 ORTHO05D008750 2.7e-06 55.8 46 54.3
Pp3c8_13230 Physcomitrium patens HOM05D017655 ORTHO05D008750 4.7e-06 55.1 43 62.8
AagrBONN_evm.TU.Sc2ySwM_228.5650 Anthoceros agrestis HOM05D017655 ORTHO05D008750 6.1e-06 54.7 71 45.1


User provided reference genes

Program Settings