Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1042300 Malus domestica HOM05D003887 ORTHO05D004523 2.2e-79 298.9 149 100.0
MD12G1043200 Malus domestica HOM05D003887 ORTHO05D004523 4.0e-73 278.1 143 95.8
Prupe.7G091600 Prunus persica HOM05D003887 ORTHO05D004523 9.1e-70 266.9 139 93.5
RcHm_v2.0_Chr3g0476591 Rosa chinensis HOM05D003887 ORTHO05D004523 3.5e-69 265.0 143 89.5
FAN05G1982 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.2e-65 251.1 138 87.7
FvH4_6g20690 Fragaria vesca HOM05D003887 ORTHO05D004523 9.8e-64 246.9 135 88.1
FAN14G0913 Fragaria x ananassa HOM05D003887 ORTHO05D004523 9.8e-64 246.9 135 88.1
FAN02G3629 Fragaria x ananassa HOM05D003887 ORTHO05D004523 4.9e-63 244.6 138 85.5
FAN09G3131 Fragaria x ananassa HOM05D003887 ORTHO05D004523 6.3e-63 244.2 138 84.1
FAN05G1871 Fragaria x ananassa HOM05D003887 ORTHO05D004523 5.4e-62 241.1 131 88.5
Duzib106G1345 Durio zibethinus HOM05D003887 ORTHO05D004523 5.6e-59 231.1 145 77.9
Potri.016G067200 Populus trichocarpa HOM05D003887 ORTHO05D004523 7.3e-59 230.7 132 85.6
Thecc.05G108100 Theobroma cacao HOM05D003887 ORTHO05D004523 4.7e-58 228.0 143 78.3
Hma1.2p1_0969F.1_g242620 Hydrangea macrophylla HOM05D003887 ORTHO05D004523 2.0e-56 222.6 126 83.3
Ciclev10013089m.g Citrus clementina HOM05D003887 ORTHO05D004523 3.4e-56 221.9 131 80.2
Haze_20135 Corylus avellana HOM05D003887 ORTHO05D004523 5.7e-56 221.1 135 77.8
Gorai.002G153400 Gossypium raimondii HOM05D003887 ORTHO05D004523 7.5e-56 220.7 126 84.1
Manes.08G035800 Manihot esculenta HOM05D003887 ORTHO05D004523 9.8e-56 220.3 135 78.5
Atru.chr8.1305 Acer truncatum HOM05D003887 ORTHO05D004523 2.9e-55 218.8 133 78.9
Gohir.A01G135300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.7e-55 218.4 126 82.5
Duzib128G1521 Durio zibethinus HOM05D003887 ORTHO05D004523 6.4e-55 217.6 135 79.3
Gohir.D01G122500 Gossypium hirsutum HOM05D003887 ORTHO05D004523 6.4e-55 217.6 126 83.3
QL10p000363 Quercus lobata HOM05D003887 ORTHO05D004523 6.4e-55 217.6 130 80.8
Sabra16G0068500 Salix brachista HOM05D003887 ORTHO05D004523 8.3e-55 217.2 124 85.5
CANSAT64G2672 Cannabis sativa HOM05D003887 ORTHO05D004523 1.1e-54 216.9 143 73.4
GSVIVG01028462001 Vitis vinifera HOM05D003887 ORTHO05D004523 1.4e-54 216.5 140 73.6
CSS0042801 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 1.8e-54 216.1 126 81.7
QL02p078458 Quercus lobata HOM05D003887 ORTHO05D004523 2.4e-54 215.7 130 80.0
QL07p027116 Quercus lobata HOM05D003887 ORTHO05D004523 5.4e-54 214.5 140 73.6
Hund18807 Selenicereus undatus HOM05D003887 ORTHO05D004523 5.4e-54 214.5 129 79.1
TAR633G0863 Trochodendron aralioides HOM05D003887 ORTHO05D004523 7.0e-54 214.2 139 75.5
Ah.08g222240 Amaranthus hybridus HOM05D003887 ORTHO05D004523 9.2e-54 213.8 129 79.1
TAR265G0002 Trochodendron aralioides HOM05D003887 ORTHO05D004523 9.2e-54 213.8 134 76.9
CiPaw.09G022700 Carya illinoinensis HOM05D003887 ORTHO05D004523 1.6e-53 213.0 131 78.6
Sc06g0010620 Simmondsia chinensis HOM05D003887 ORTHO05D004523 3.5e-53 211.8 122 82.8
COL.COLO4_29521 Corchorus olitorius HOM05D003887 ORTHO05D004523 4.6e-53 211.5 132 79.5
Sc06g0008630 Simmondsia chinensis HOM05D003887 ORTHO05D004523 1.3e-52 209.9 130 80.0
Cc06_g06820 Coffea canephora HOM05D003887 ORTHO05D004523 3.9e-52 208.4 122 83.6
Gorai.012G141600 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.9e-52 208.4 140 76.4
Nn1g06263 Nelumbo nucifera HOM05D003887 ORTHO05D004523 5.0e-52 208.0 129 75.2
Solyc10g079830.3 Solanum lycopersicum HOM05D003887 ORTHO05D004523 6.6e-52 207.6 122 79.5
TWI18G1123 Tripterygium wilfordii HOM05D003887 ORTHO05D004523 1.1e-51 206.8 130 77.7
Cpa.g.sc104.4 Carica papaya HOM05D003887 ORTHO05D004523 1.5e-51 206.5 130 76.9
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.9e-51 206.1 131 74.8
Gohir.D04G154300 Gossypium hirsutum HOM05D003887 ORTHO05D004523 3.3e-51 205.3 122 82.8
Sopen10g030440 Solanum pennellii HOM05D003887 ORTHO05D004523 3.3e-51 205.3 122 79.5
Aqoxy1G00605 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 4.3e-51 204.9 129 75.2
Gohir.A04G113000 Gossypium hirsutum HOM05D003887 ORTHO05D004523 5.6e-51 204.5 140 75.0
Cc06_g20890 Coffea canephora HOM05D003887 ORTHO05D004523 1.2e-50 203.4 140 72.9
Aqoxy2G02430 Aquilegia oxysepala HOM05D003887 ORTHO05D004523 1.6e-50 203.0 129 74.4
MBI07_g23221_MAGBIO Magnolia biondii HOM05D003887 ORTHO05D004523 2.1e-50 202.6 121 77.7
Nitab4.5_0008674g0010 Nicotiana tabacum HOM05D003887 ORTHO05D004523 2.1e-50 202.6 122 77.0
EL10Ac7g16270 Beta vulgaris HOM05D003887 ORTHO05D004523 2.8e-50 202.2 122 82.0
CAN.G1237.27 Capsicum annuum HOM05D003887 ORTHO05D004523 2.8e-50 202.2 121 77.7
vmacro07505 Vaccinium macrocarpon HOM05D003887 ORTHO05D004523 2.8e-50 202.2 119 79.8
PGSC0003DMG400029847 Solanum tuberosum HOM05D003887 ORTHO05D004523 3.6e-50 201.8 121 79.3
Os08g0556200 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 4.7e-50 201.4 127 78.0
PGR142G0321 Punica granatum HOM05D003887 ORTHO05D004523 1.4e-49 199.9 125 74.4
Eucgr.G00614 Eucalyptus grandis HOM05D003887 ORTHO05D004523 1.8e-49 199.5 120 80.0
CAN.G1656.10 Capsicum annuum HOM05D003887 ORTHO05D004523 2.3e-49 199.1 122 76.2
Nn5g28552 Nelumbo nucifera HOM05D003887 ORTHO05D004523 4.0e-49 198.4 127 74.0
Lj3C240T1 Lonicera japonica HOM05D003887 ORTHO05D004523 1.5e-48 196.4 127 74.8
Peaxi162Scf00130g01133 Petunia axillaris HOM05D003887 ORTHO05D004523 1.5e-48 196.4 119 76.5
VMungo1215G2564 Vigna mungo HOM05D003887 ORTHO05D004523 2.6e-48 195.7 127 74.8
MSTRG.10420 Avicennia marina HOM05D003887 ORTHO05D004523 3.4e-48 195.3 119 79.0
MSTRG.26582 Avicennia marina HOM05D003887 ORTHO05D004523 3.4e-48 195.3 120 77.5
AUR62020206 Chenopodium quinoa HOM05D003887 ORTHO05D004523 4.4e-48 194.9 130 73.8
ECA233G2913 Erigeron canadensis HOM05D003887 ORTHO05D004523 4.4e-48 194.9 126 75.4
VMungo1383G2471 Vigna mungo HOM05D003887 ORTHO05D004523 5.8e-48 194.5 127 72.4
Lj1g0007196 Lotus japonicus HOM05D003887 ORTHO05D004523 7.5e-48 194.1 135 69.6
DCAR_020685 Daucus carota HOM05D003887 ORTHO05D004523 9.8e-48 193.7 126 74.6
Glyma.03G203800 Glycine max HOM05D003887 ORTHO05D004523 9.8e-48 193.7 127 74.0
Glyma.07G068300 Glycine max HOM05D003887 ORTHO05D004523 9.8e-48 193.7 127 75.6
SHI28303 Sapria himalayana HOM05D003887 ORTHO05D004523 9.8e-48 193.7 131 67.9
CDE02G3355 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.3e-47 193.4 128 70.3
Os09g0560500 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.7e-47 193.0 131 70.2
Rhsim03G0059700 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.2e-47 192.6 139 67.6
Migut.L01853 Erythranthe guttata HOM05D003887 ORTHO05D004523 4.9e-47 191.4 120 75.8
Lsat_1_v5_gn_6_34741 Lactuca sativa HOM05D003887 ORTHO05D004523 3.2e-46 188.7 124 71.8
PSO210G2693 Papaver somniferum HOM05D003887 ORTHO05D004523 4.1e-46 188.3 131 66.4
Phvul.001G197300 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 7.0e-46 187.6 127 71.7
Lalb_Chr20g0111271 Lupinus albus HOM05D003887 ORTHO05D004523 1.6e-45 186.4 120 76.7
PSO339G2059 Papaver somniferum HOM05D003887 ORTHO05D004523 2.7e-45 185.7 131 65.6
Phvul.001G204200 Phaseolus vulgaris HOM05D003887 ORTHO05D004523 4.6e-45 184.9 127 70.9
PSO513G0097 Papaver somniferum HOM05D003887 ORTHO05D004523 7.8e-45 184.1 131 63.4
SGA_v2.0_scaffold392G50674 Striga asiatica HOM05D003887 ORTHO05D004523 1.7e-44 183.0 120 75.8
unitig_899.g14853 Utricularia gibba HOM05D003887 ORTHO05D004523 3.0e-44 182.2 120 69.2
ATR0730G208 Amborella trichopoda HOM05D003887 ORTHO05D004523 3.9e-44 181.8 126 64.3
HanXRQChr13g0398651 Helianthus annuus HOM05D003887 ORTHO05D004523 3.9e-44 181.8 114 76.3
Zm00001eb039720 Zea mays HOM05D003887 ORTHO05D004523 3.9e-44 181.8 120 72.5
Zm00001eb039830 Zea mays HOM05D003887 ORTHO05D004523 3.9e-44 181.8 128 70.3
Glyma.16G034300 Glycine max HOM05D003887 ORTHO05D004523 1.5e-43 179.9 127 70.1
PSO339G1162 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-43 179.9 130 63.1
PSO782G0206 Papaver somniferum HOM05D003887 ORTHO05D004523 1.5e-43 179.9 133 60.2
SEGI_09372 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.9e-43 179.5 126 64.3
ATR0730G166 Amborella trichopoda HOM05D003887 ORTHO05D004523 7.3e-43 177.6 126 64.3
Medtr2g088720 Medicago truncatula HOM05D003887 ORTHO05D004523 7.3e-43 177.6 124 69.4
Psat3g027720 Pisum sativum HOM05D001091 ORTHO05D004523 9.5e-43 177.2 123 69.1
Psat5g004600 Pisum sativum HOM05D003887 ORTHO05D004523 1.6e-42 176.4 124 68.5
Medtr7g106580 Medicago truncatula HOM05D003887 ORTHO05D004523 3.6e-42 175.3 124 70.2
Ca_09068_v3 Cicer arietinum L. HOM05D003887 ORTHO05D004523 4.7e-42 174.9 121 71.9
PSO513G0196 Papaver somniferum HOM05D003887 ORTHO05D004523 4.7e-42 174.9 126 61.9
SEGI_12007 Sequoiadendron giganteum HOM05D003887 ORTHO05D004523 1.1e-41 173.7 126 62.7
AUR62042906 Chenopodium quinoa HOM05D003887 ORTHO05D004523 1.4e-41 173.3 116 73.3
Oeu020172.1 Olea europaea HOM05D003887 ORTHO05D004523 1.4e-41 173.3 122 70.5
arahy.Tifrunner.gnm1.ann1.Z0QHZD Arachis hypogaea HOM05D003887 ORTHO05D004523 1.8e-41 172.9 120 69.2
Os06g0154600 Oryza sativa ssp. japonica HOM05D003887 ORTHO05D004523 1.8e-41 172.9 118 68.6
TPR.G25788 Trifolium pratense HOM05D003887 ORTHO05D004523 2.3e-41 172.6 123 67.5
AagrBONN_evm.TU.Sc2ySwM_117.2540 Anthoceros agrestis HOM05D003887 ORTHO05D004523 5.2e-41 171.4 119 65.5
Lj6g0023596 Lotus japonicus HOM05D003887 ORTHO05D004523 5.2e-41 171.4 119 67.2
THA.LOC104826798 Tarenaya hassleriana HOM05D003887 ORTHO05D004523 8.9e-41 170.6 128 65.6
CDE09G0948 Ceratophyllum demersum HOM05D003887 ORTHO05D004523 1.2e-40 170.2 110 70.9
Actinidia03866 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.5e-40 169.9 97 84.5
Actinidia03974 Actinidia chinensis HOM05D003887 ORTHO05D004523 1.5e-40 169.9 97 84.5
Gohir.A04G112940 Gossypium hirsutum HOM05D003887 ORTHO05D004523 1.5e-40 169.9 122 72.1
Medtr7g106600 Medicago truncatula HOM05D003887 ORTHO05D004523 1.5e-40 169.9 124 67.7
ClCG04G001280 Citrullus lanatus HOM05D003887 ORTHO05D004523 2.0e-40 169.5 127 62.2
HanXRQChr01g0028311 Helianthus annuus HOM05D003887 ORTHO05D004523 2.0e-40 169.5 114 73.7
CsaV3_4G004540 Cucumis sativus L. HOM05D003887 ORTHO05D004523 3.4e-40 168.7 127 61.4
BcaB06g25586 Brassica carinata HOM05D003887 ORTHO05D004523 4.4e-40 168.3 128 60.2
AL3G23320 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 5.8e-40 167.9 136 58.8
Sed0005545 Sechium edule HOM05D003887 ORTHO05D004523 5.8e-40 167.9 124 62.9
C05p56150 Brassica napus HOM05D003887 ORTHO05D004523 1.7e-39 166.4 130 58.5
BraA05t22556Z Brassica rapa HOM05D003887 ORTHO05D004523 1.7e-39 166.4 130 59.2
BcaB04g21119 Brassica carinata HOM05D003887 ORTHO05D004523 2.2e-39 166.0 142 56.3
BcaC05g29334 Brassica carinata HOM05D003887 ORTHO05D004523 2.9e-39 165.6 129 58.9
BcaC09g48199 Brassica carinata HOM05D003887 ORTHO05D004523 3.7e-39 165.2 126 60.3
BolC1t05293H Brassica oleracea HOM05D003887 ORTHO05D004523 3.7e-39 165.2 126 60.3
BraA01t04162Z Brassica rapa HOM05D003887 ORTHO05D004523 3.7e-39 165.2 126 60.3
MELO3C019050.2 Cucumis melo HOM05D003887 ORTHO05D004523 3.7e-39 165.2 125 61.6
Nitab4.5_0000677g0080 Nicotiana tabacum HOM05D003887 ORTHO05D004523 8.3e-39 164.1 109 74.3
A05p37580 Brassica napus HOM05D003887 ORTHO05D004523 1.4e-38 163.3 129 58.9
Carub.0003s1109 Capsella rubella HOM05D003887 ORTHO05D004523 3.2e-38 162.2 120 63.3
Thhalv10021697m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 3.2e-38 162.2 120 63.3
A05p37590 Brassica napus HOM05D003887 ORTHO05D004523 4.1e-38 161.8 128 59.4
BraA05t22557Z Brassica rapa HOM05D003887 ORTHO05D004523 4.1e-38 161.8 128 59.4
Glyma.19G201200 Glycine max HOM05D003887 ORTHO05D004523 5.4e-38 161.4 128 67.2
Sp3g09980 Schrenkiella parvula HOM05D003887 ORTHO05D004523 9.2e-38 160.6 126 59.5
SMO351G0485 Selaginella moellendorffii HOM05D003887 ORTHO05D004523 2.7e-37 159.1 117 63.2
SalBow7G3037 Salvia bowleyana HOM05D003887 ORTHO05D004523 3.5e-37 158.7 139 57.6
Thhalv10005125m.g Eutrema salsugineum HOM05D003887 ORTHO05D004523 4.6e-37 158.3 121 61.2
Lj6g0002343 Lotus japonicus HOM05D003887 ORTHO05D004523 1.0e-36 157.1 124 58.9
AL8G40010 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 1.7e-36 156.4 132 59.1
AT3G11750 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 1.7e-36 156.4 121 60.3
Aa31LG3G5210 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.1e-36 154.8 121 62.8
AT5G62980 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 6.6e-36 154.5 132 58.3
BcaB02g09713 Brassica carinata HOM05D003887 ORTHO05D004523 6.6e-36 154.5 121 61.2
Carub.0008s2369 Capsella rubella HOM05D003887 ORTHO05D004523 1.9e-35 152.9 132 56.8
DCAR_009071 Daucus carota HOM05D003887 ORTHO05D004523 3.3e-35 152.1 135 59.3
Lj6g0002536 Lotus japonicus HOM05D003887 ORTHO05D004523 3.3e-35 152.1 125 56.8
Pp3c1_42850 Physcomitrium patens HOM05D003887 ORTHO05D004523 9.5e-35 150.6 116 58.6
CARHR276790 Cardamine hirsuta HOM05D003887 ORTHO05D004523 1.2e-34 150.2 119 62.2
Aa31LG3G5230 Aethionema arabicum HOM05D003887 ORTHO05D004523 2.1e-34 149.4 121 60.3
ECA232G3477 Erigeron canadensis HOM05D003887 ORTHO05D004523 1.8e-33 146.4 99 71.7
AL3G35860 Arabidopsis lyrata HOM05D003887 ORTHO05D004523 2.0e-32 142.9 119 53.8
arahy.Tifrunner.gnm1.ann1.K0K91E Arachis hypogaea HOM05D003887 ORTHO05D004523 3.2e-30 135.6 120 57.5
Mapoly0109s0052 Marchantia polymorpha HOM05D003887 ORTHO05D004523 7.1e-30 134.4 123 52.0
HPP92_016697 Vanilla planifolia HOM05D003887 ORTHO05D004523 9.0e-25 117.5 79 69.6
Actinidia06188 Actinidia chinensis HOM05D003887 ORTHO05D004523 2.6e-24 115.9 58 87.9
CSS0033244 Camellia sinensis var. sinensis HOM05D003887 ORTHO05D004523 3.5e-21 105.5 65 78.5
PGSC0003DMG400007623 Solanum tuberosum HOM05D003887 ORTHO05D004523 6.0e-21 104.8 75 62.7
arahy.Tifrunner.gnm1.ann1.97GEQU Arachis hypogaea HOM05D003887 ORTHO05D004523 1.9e-19 99.8 64 78.1
arahy.Tifrunner.gnm1.ann1.3PGZ0K Arachis hypogaea HOM05D003887 ORTHO05D004523 2.5e-19 99.4 62 79.0
arahy.Tifrunner.gnm1.ann1.T8NVRB Arachis hypogaea HOM05D003887 ORTHO05D004523 5.6e-19 98.2 63 76.2
Rhsim03G0060000 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.8e-18 95.9 64 71.9
Rhsim03G0060200 Rhododendron simsii HOM05D003887 ORTHO05D004523 2.8e-18 95.9 64 71.9
Nitab4.5_0000936g0150 Nicotiana tabacum HOM05D003887 ORTHO05D004523 3.6e-18 95.5 81 66.7
Zm00001eb027530 Zea mays HOM05D011105 ORTHO05D007705 1.8e-17 93.2 54 74.1
Cre02.g097450 Chlamydomonas reinhardtii HOM05D003887 ORTHO05D004523 9.0e-17 90.9 112 38.4
Gohir.D09G062150 Gossypium hirsutum HOM05D003887 ORTHO05D004523 2.0e-16 89.7 53 77.4
Gorai.006G076900 Gossypium raimondii HOM05D003887 ORTHO05D004523 3.4e-16 89.0 64 68.8
Mapoly0121s0041 Marchantia polymorpha HOM05D003887 ORTHO05D004523 1.7e-15 86.7 66 54.5
Mapoly0003s0213 Marchantia polymorpha HOM05D003887 ORTHO05D004523 5.4e-14 81.6 118 38.1
Actinidia37764 Actinidia chinensis HOM05D001091 ORTHO05D001020 5.1e-12 75.1 51 76.5
Aa31LG3G5240 Aethionema arabicum HOM05D003887 ORTHO05D004523 5.1e-12 75.1 68 57.4
AT3G21730 Arabidopsis thaliana HOM05D003887 ORTHO05D004523 2.8e-10 69.3 64 50.0
Lj3A241T19 Lonicera japonica HOM05D003887 ORTHO05D004523 1.4e-09 67.0 59 57.6
arahy.Tifrunner.gnm1.ann1.P0I4D3 Arachis hypogaea HOM05D003887 ORTHO05D004523 1.7e-07 60.1 35 82.9
Nitab4.5_0006280g0090 Nicotiana tabacum HOM05D003887 ORTHO05D048295 3.2e-06 55.8 39 61.5


User provided reference genes

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