Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 1.3e-69 266.2 128 100.0
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 1.2e-30 136.7 306 34.6
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 2.0e-28 129.4 306 33.7
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.1e-26 123.6 305 32.5
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 3.1e-26 122.1 306 32.4
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 3.5e-25 118.6 306 31.4
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 4.5e-25 118.2 302 32.8
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 5.9e-25 117.9 299 33.8
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 1.7e-24 116.3 303 31.7
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 5.0e-24 114.8 299 31.4
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 6.5e-24 114.4 303 31.0
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 8.5e-24 114.0 301 30.9
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 8.5e-24 114.0 299 31.4
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 1.1e-23 113.6 303 31.4
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 1.5e-23 113.2 301 30.6
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 1.5e-23 113.2 301 30.9
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 1.9e-23 112.8 301 30.9
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 2.5e-23 112.5 303 32.7
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.5e-23 112.5 232 35.8
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 5.5e-23 111.3 301 30.2
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 7.2e-23 110.9 302 31.8
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 7.2e-23 110.9 301 30.2
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 9.4e-23 110.5 301 30.2
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 9.4e-23 110.5 303 30.4
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 1.2e-22 110.2 301 30.9
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 1.2e-22 110.2 301 30.6
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 2.1e-22 109.4 304 30.3
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 2.7e-22 109.0 301 30.6
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.7e-22 109.0 303 31.7
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 2.7e-22 109.0 303 31.7
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 3.6e-22 108.6 302 30.5
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 3.6e-22 108.6 301 30.2
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 3.6e-22 108.6 299 30.4
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 3.6e-22 108.6 301 30.2
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 3.6e-22 108.6 302 30.1
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 4.7e-22 108.2 305 31.5
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 4.7e-22 108.2 308 29.9
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 6.1e-22 107.8 302 30.1
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 8.0e-22 107.5 301 31.6
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 8.0e-22 107.5 301 30.6
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 1.0e-21 107.1 299 30.4
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 1.4e-21 106.7 301 30.9
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 2.3e-21 105.9 61 86.9
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 3.0e-21 105.5 302 29.8
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 3.0e-21 105.5 301 30.2
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 3.0e-21 105.5 301 29.2
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 3.0e-21 105.5 301 30.6
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 4.0e-21 105.1 301 29.6
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 4.0e-21 105.1 302 29.8
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 5.2e-21 104.8 303 28.7
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 5.2e-21 104.8 301 29.9
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 6.7e-21 104.4 301 29.6
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 6.7e-21 104.4 303 29.7
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 6.7e-21 104.4 301 29.2
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 6.7e-21 104.4 299 30.1
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 6.7e-21 104.4 301 29.2
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 8.8e-21 104.0 301 29.2
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 8.8e-21 104.0 301 29.2
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 8.8e-21 104.0 301 30.2
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 8.8e-21 104.0 301 28.6
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 8.8e-21 104.0 301 28.2
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 1.1e-20 103.6 301 29.2
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 1.1e-20 103.6 301 30.2
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 1.5e-20 103.2 299 28.8
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 2.6e-20 102.4 302 29.8
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 3.3e-20 102.1 301 29.6
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 3.3e-20 102.1 299 29.4
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 3.3e-20 102.1 301 29.2
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 4.4e-20 101.7 61 85.2
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 5.7e-20 101.3 61 85.2
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 5.7e-20 101.3 61 85.2
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 5.7e-20 101.3 61 85.2
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 7.4e-20 100.9 61 82.0
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 9.7e-20 100.5 61 78.7
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 3.7e-19 98.6 73 71.2
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 6.3e-19 97.8 298 28.5
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 8.2e-19 97.4 61 77.0
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.8e-18 96.3 61 80.3
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 1.8e-18 96.3 61 80.3
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 2.4e-18 95.9 61 80.3
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 7.0e-18 94.4 61 73.8
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 7.0e-18 94.4 61 73.8
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 7.0e-18 94.4 61 73.8
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 7.0e-18 94.4 61 73.8
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 1.2e-17 93.6 61 78.7
Psat3g205720 Pisum sativum HOM05D005131 ORTHO05D006645 1.6e-17 93.2 65 72.3
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 1.6e-17 93.2 61 73.8
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 2.0e-17 92.8 61 77.0
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 2.0e-17 92.8 61 77.0
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.0e-17 92.8 61 82.0
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 2.0e-17 92.8 302 28.8
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 2.6e-17 92.4 297 28.6
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 4.5e-17 91.7 61 73.8
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 5.9e-17 91.3 299 27.4
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 7.7e-17 90.9 60 71.7
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 1.0e-16 90.5 58 77.6
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.0e-16 90.5 61 72.1
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 1.3e-16 90.1 61 73.8
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 2.9e-16 89.0 49 81.6
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.9e-16 89.0 61 72.1
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 3.8e-16 88.6 49 79.6
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 1.1e-15 87.0 61 68.9
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 1.5e-15 86.7 47 83.0
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 1.5e-15 86.7 49 77.6
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 1.5e-15 86.7 61 70.5
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 1.9e-15 86.3 49 77.6
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 2.5e-15 85.9 47 80.9
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 4.2e-15 85.1 49 77.6
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 4.2e-15 85.1 61 65.6
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 9.4e-15 84.0 61 62.3
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.0e-13 80.5 61 63.9
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.4e-13 80.1 47 76.6
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.8e-13 79.7 48 70.8
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 4.0e-13 78.6 47 76.6
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 6.8e-13 77.8 48 75.0
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.2e-12 77.0 48 64.6
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.0e-12 76.3 51 70.6
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 4.4e-12 75.1 48 72.9
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 1.7e-11 73.2 48 66.7
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 2.2e-11 72.8 47 68.1
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 2.2e-11 72.8 48 70.8
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 4.8e-11 71.6 97 46.4
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 8.3e-11 70.9 131 42.0
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 2.4e-10 69.3 45 66.7
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 9.1e-10 67.4 51 60.8
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 7.7e-09 64.3 61 55.7
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 6.5e-08 61.2 61 45.9
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 5.5e-07 58.2 49 49.0
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 2.1e-06 56.2 29 82.8
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 3.6e-06 55.5 98 33.7
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 3.6e-06 55.5 63 50.8


User provided reference genes

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