Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 1.2e-200 703.0 365 100.0
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 2.6e-179 632.1 366 86.1
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 2.1e-160 569.3 364 78.8
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 1.7e-133 479.9 367 67.8
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 1.7e-133 479.9 367 67.8
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.7e-131 472.6 369 66.1
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.7e-131 472.6 369 66.1
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.3e-130 470.3 366 66.9
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.6e-128 462.2 397 62.2
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 3.6e-128 462.2 397 62.2
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.5e-126 456.8 397 62.0
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.3e-122 443.7 367 61.9
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.3e-120 437.2 372 62.6
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 3.4e-118 429.1 365 60.8
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 7.6e-118 427.9 364 60.7
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 3.2e-116 422.5 369 61.2
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.7e-114 416.8 373 59.8
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 5.6e-113 411.8 362 61.6
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 1.3e-112 410.6 365 60.0
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 3.6e-112 409.1 366 60.1
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 4.0e-111 405.6 371 59.3
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 8.4e-109 397.9 369 58.8
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 1.1e-108 397.5 366 58.7
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 1.4e-108 397.1 366 57.1
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 3.2e-108 396.0 366 61.5
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 1.2e-107 394.0 363 58.4
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.2e-107 394.0 367 56.4
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 3.5e-107 392.5 375 57.3
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.6e-107 392.1 366 57.1
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 5.1e-106 388.7 367 56.1
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 6.7e-106 388.3 380 55.5
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.5e-105 387.1 380 59.2
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 2.5e-105 386.3 366 58.5
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 4.3e-105 385.6 367 57.8
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 7.4e-105 384.8 377 57.6
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 7.4e-105 384.8 380 57.6
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 7.4e-105 384.8 380 57.6
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.3e-104 384.0 367 57.8
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.0e-102 376.7 297 65.0
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.0e-102 376.7 365 56.4
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 7.6e-102 374.8 369 55.6
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 7.6e-102 374.8 369 55.6
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 7.6e-102 374.8 365 60.5
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 1.7e-101 373.6 364 60.7
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 8.4e-101 371.3 364 56.6
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 2.1e-99 366.7 372 53.0
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 1.0e-98 364.4 361 56.2
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.3e-98 364.0 364 56.3
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 6.7e-98 361.7 370 54.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.3e-96 357.5 327 56.9
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 4.1e-95 352.4 322 58.1
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 3.4e-94 349.4 362 51.4
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 5.8e-94 348.6 371 50.9
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.7e-93 347.1 363 52.9
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 3.8e-93 345.9 363 51.2
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 5.0e-93 345.5 360 51.4
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 1.1e-92 344.4 366 50.8
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.1e-92 344.4 366 50.8
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 1.4e-92 344.0 362 51.9
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.2e-92 342.8 305 58.4
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.2e-92 342.8 364 50.3
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 4.2e-92 342.4 361 51.5
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 2.1e-91 340.1 366 50.5
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 2.1e-91 340.1 358 52.0
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.6e-91 339.0 285 61.4
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 4.6e-91 339.0 292 59.2
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 6.1e-91 338.6 363 53.2
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.0e-90 337.8 364 50.3
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.3e-90 337.4 373 52.8
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.3e-90 337.4 361 52.1
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.5e-89 334.0 282 61.7
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 1.9e-89 333.6 354 50.8
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 1.9e-89 333.6 366 50.0
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 3.3e-89 332.8 359 51.3
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 9.7e-89 331.3 286 59.1
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 1.6e-88 330.5 359 51.0
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 2.2e-88 330.1 364 50.3
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 2.2e-88 330.1 366 49.5
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 2.2e-88 330.1 359 50.4
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 4.8e-88 328.9 361 50.7
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.1e-87 327.8 376 49.5
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 1.1e-87 327.8 324 56.5
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.4e-87 327.4 361 49.3
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 3.1e-87 326.2 363 51.2
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 3.1e-87 326.2 363 51.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 6.9e-87 325.1 376 51.1
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 1.2e-86 324.3 269 58.7
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 3.4e-86 322.8 334 54.5
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 3.4e-86 322.8 364 50.3
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 5.9e-86 322.0 287 57.5
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 1.3e-85 320.9 364 52.7
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 1.3e-85 320.9 368 50.3
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 2.2e-85 320.1 358 50.3
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 5.0e-85 318.9 382 49.2
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 8.5e-85 318.2 367 49.3
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.1e-84 317.8 363 50.1
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.1e-84 317.8 387 48.3
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.4e-84 317.4 364 50.3
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 1.9e-84 317.0 298 56.0
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 7.2e-84 315.1 359 49.9
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 9.4e-84 314.7 360 50.0
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 2.1e-83 313.5 362 48.9
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 6.1e-83 312.0 283 57.6
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 7.9e-83 311.6 361 49.3
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 7.9e-83 311.6 359 50.4
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.4e-82 310.8 269 55.8
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.4e-82 310.8 366 47.0
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.8e-82 310.5 359 48.2
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 2.3e-82 310.1 363 48.2
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 3.0e-82 309.7 366 47.3
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 5.1e-82 308.9 261 59.0
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 5.1e-82 308.9 359 52.6
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 6.7e-82 308.5 287 55.4
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 1.5e-81 307.4 269 56.9
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.5e-81 306.6 362 48.6
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 7.4e-81 305.1 373 46.6
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 8.2e-80 301.6 372 50.0
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.4e-79 300.8 380 46.6
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 9.1e-79 298.1 360 47.5
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 3.4e-78 296.2 306 53.6
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 5.9e-78 295.4 281 52.0
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 1.3e-77 294.3 321 49.8
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 2.7e-75 286.6 309 53.1
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 6.1e-75 285.4 362 45.9
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 1.5e-73 280.8 307 53.1
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.4e-71 274.2 319 48.3
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 2.6e-70 270.0 318 49.7
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.9e-70 268.9 328 46.6
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 2.2e-69 266.9 366 46.2
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.8e-69 266.2 317 47.9
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.9e-68 263.8 227 57.7
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 2.7e-67 260.0 257 53.3
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 6.1e-67 258.8 257 51.8
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 2.6e-65 253.4 309 46.6
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 2.6e-65 253.4 309 46.6
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.7e-64 250.8 309 46.3
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 3.7e-64 249.6 259 52.9
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.1e-63 246.5 316 47.2
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 1.2e-62 244.6 380 39.7
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.6e-62 244.2 357 41.5
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.3e-61 241.1 256 50.8
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 4.0e-58 229.6 435 34.9
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 4.1e-55 219.5 213 55.4
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 9.1e-55 218.4 342 41.2
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.0e-54 217.2 317 44.5
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 2.7e-51 206.8 264 46.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.0e-50 203.4 151 61.6
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.0e-49 200.7 314 38.5
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.1e-47 194.9 326 38.3
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.4e-47 193.7 151 79.5
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.3e-44 183.0 185 55.7
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 4.7e-43 179.5 248 39.5
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 5.7e-41 172.6 222 44.1
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 8.6e-37 158.7 449 27.8
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 2.5e-36 157.1 136 52.2
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.6e-35 154.5 185 47.6
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.3e-32 144.8 162 51.2
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 3.2e-31 140.2 282 35.5
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 3.9e-29 133.3 172 43.6
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.2e-27 128.3 156 50.0
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 1.2e-27 128.3 203 41.9
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 4.7e-27 126.3 212 40.6
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.4e-26 124.8 162 45.1
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.2e-24 117.5 149 45.0
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 1.9e-23 114.4 75 64.0
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 7.1e-23 112.5 319 28.8
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 5.6e-20 102.8 128 40.6
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 2.1e-19 100.9 107 45.8
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 6.4e-16 89.4 101 45.5
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 6.4e-16 89.4 113 43.4
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.4e-15 87.4 101 48.5
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 2.7e-14 84.0 151 33.8
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 3.5e-14 83.6 83 54.2
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 6.0e-14 82.8 79 54.4
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 2.5e-12 77.4 103 38.8
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 1.2e-11 75.1 117 37.6
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 4.7e-11 73.2 47 70.2
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 6.2e-11 72.8 43 76.7
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 6.8e-10 69.3 45 71.1
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 2.6e-09 67.4 56 51.8
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 7.6e-09 65.9 55 52.7
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 2.4e-07 60.8 132 35.6


User provided reference genes

Program Settings