Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 1.7e-94 349.4 182 100.0
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 1.6e-68 263.1 185 81.1
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 8.6e-38 161.0 172 61.0
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.3e-37 158.7 172 60.5
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 3.1e-35 152.5 179 58.1
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 4.0e-35 152.1 179 58.1
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.1e-32 144.1 179 53.1
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 9.2e-32 141.0 178 54.5
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 4.3e-29 132.1 170 52.4
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 9.6e-29 131.0 185 47.6
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 1.2e-28 130.6 186 51.1
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 1.2e-28 130.6 185 47.0
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 2.1e-28 129.8 168 49.4
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 3.6e-28 129.0 180 51.7
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 4.7e-28 128.6 169 47.9
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 1.1e-27 127.5 185 46.5
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 1.4e-27 127.1 161 50.3
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 6.9e-27 124.8 171 53.8
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 6.9e-27 124.8 174 48.9
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 8.9e-27 124.4 168 52.4
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 4.4e-26 122.1 140 60.0
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 6.4e-25 118.2 121 57.9
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 8.4e-25 117.9 168 51.2
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 8.4e-25 117.9 182 45.1
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 3.2e-24 115.9 165 47.3
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 5.4e-24 115.2 173 49.1
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 9.3e-24 114.4 159 50.3
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 2.1e-23 113.2 162 48.8
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 2.7e-23 112.8 167 46.1
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.7e-23 112.8 164 47.6
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 4.6e-23 112.1 196 44.4
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 1.3e-22 110.5 133 59.4
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 3.9e-22 109.0 154 53.9
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 5.1e-22 108.6 137 51.1
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 1.1e-21 107.5 167 46.7
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 1.5e-21 107.1 166 47.0
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 1.5e-21 107.1 144 54.2
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 1.5e-21 107.1 168 45.8
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.5e-21 107.1 172 47.1
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 2.5e-21 106.3 160 46.9
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 3.3e-21 105.9 164 46.3
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 5.6e-21 105.1 169 44.4
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 2.1e-20 103.2 150 47.3
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 1.4e-19 100.5 109 56.0
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 2.4e-19 99.8 161 45.3
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 2.4e-19 99.8 168 44.6
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 5.3e-19 98.6 143 51.0
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 9.0e-19 97.8 146 46.6
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 2.6e-18 96.3 143 50.3
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 5.8e-18 95.1 123 54.5
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 7.6e-18 94.7 174 41.4
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 7.6e-18 94.7 124 54.8
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 2.2e-17 93.2 171 43.3
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 2.2e-17 93.2 174 41.4
Glyma.02G198900 Glycine max HOM05D006872 ORTHO05D006261 1.1e-16 90.9 140 47.1
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 1.9e-16 90.1 156 42.9
TPR.G23353 Trifolium pratense HOM05D006872 ORTHO05D006261 1.9e-16 90.1 126 50.0
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 2.4e-16 89.7 169 42.6
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 9.3e-16 87.8 101 56.4
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 1.2e-15 87.4 98 50.0
VMungo0720G0028 Vigna mungo HOM05D006872 ORTHO05D006261 1.2e-15 87.4 105 54.3
TPR.G18391 Trifolium pratense HOM05D006872 ORTHO05D006261 1.3e-14 84.0 127 46.5
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.8e-14 83.6 173 40.5
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 3.9e-14 82.4 186 38.7
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 6.7e-14 81.6 100 50.0
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.9e-13 80.1 101 49.5
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 3.3e-13 79.3 149 41.6
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 3.3e-13 79.3 172 38.4
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 3.3e-13 79.3 122 44.3
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 7.4e-13 78.2 158 40.5
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 9.6e-13 77.8 108 50.9
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 2.8e-12 76.3 155 42.6
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 2.8e-12 76.3 75 60.0
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 4.8e-12 75.5 135 45.2
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 1.4e-11 73.9 139 43.2
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 1.4e-11 73.9 164 41.5
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 2.4e-11 73.2 86 51.2
SHI12280 Sapria himalayana HOM05D006872 ORTHO05D006261 2.4e-11 73.2 91 42.9
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 4.0e-11 72.4 83 56.6
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 5.3e-11 72.0 134 44.0
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 6.9e-11 71.6 76 57.9
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 6.9e-11 71.6 161 39.1
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 9.0e-11 71.2 96 53.1
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 2.0e-10 70.1 77 57.1
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 2.0e-10 70.1 135 43.7
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 2.6e-10 69.7 86 46.5
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 5.8e-10 68.6 99 47.5
RcHm_v2.0_Chr3g0488241 Rosa chinensis HOM05D006872 ORTHO05D006261 7.6e-10 68.2 52 65.4
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 1.3e-09 67.4 77 51.9
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.7e-09 67.0 115 43.5
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 2.9e-09 66.2 51 72.5
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 4.9e-09 65.5 67 52.2
Carub.0005s1890 Capsella rubella HOM05D006872 ORTHO05D006261 6.4e-09 65.1 101 48.5
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 8.4e-09 64.7 111 46.8
Medtr2g102560 Medicago truncatula HOM05D006872 ORTHO05D006261 1.4e-08 63.9 63 63.5
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 2.4e-08 63.2 105 41.0
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 3.2e-08 62.8 64 54.7
Sp5g09790 Schrenkiella parvula HOM05D006872 ORTHO05D006261 3.2e-08 62.8 99 48.5
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 4.2e-08 62.4 111 43.2
Thhalv10011026m.g Eutrema salsugineum HOM05D006872 ORTHO05D006261 5.5e-08 62.0 109 46.8
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 5.5e-08 62.0 153 34.6
Medtr4g085050 Medicago truncatula HOM05D006872 ORTHO05D006261 9.3e-08 61.2 58 63.8
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.6e-07 60.5 95 45.3
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.6e-07 60.5 78 48.7
unitig_578.g16361 Utricularia gibba HOM05D006872 ORTHO05D006261 1.6e-07 60.5 155 34.8
AL5G33230 Arabidopsis lyrata HOM05D006872 ORTHO05D006261 2.1e-07 60.1 109 45.9
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 2.1e-07 60.1 108 46.3
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 2.1e-07 60.1 125 36.8
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 2.1e-07 60.1 108 46.3
CiPaw.13G131800 Carya illinoinensis HOM05D006872 ORTHO05D006261 2.7e-07 59.7 94 41.5
THA.LOC104799749 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 2.7e-07 59.7 98 53.1
BcaC02g09248 Brassica carinata HOM05D006872 ORTHO05D006261 3.5e-07 59.3 108 45.4
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 3.5e-07 59.3 64 59.4
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 3.5e-07 59.3 91 44.0
Sp6g36570 Schrenkiella parvula HOM05D010494 ORTHO05D006261 3.5e-07 59.3 152 34.9
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 4.6e-07 58.9 52 51.9
C04p40490 Brassica napus HOM05D006872 ORTHO05D006261 6.0e-07 58.5 108 45.4
BolC4t25629H Brassica oleracea HOM05D006872 ORTHO05D006261 6.0e-07 58.5 108 45.4
Migut.J00684 Erythranthe guttata HOM05D006872 ORTHO05D006261 6.0e-07 58.5 105 41.0
Gorai.012G156800 Gossypium raimondii HOM05D007970 ORTHO05D009943 6.0e-07 58.5 87 44.8
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 6.0e-07 58.5 52 51.9
Thecc.09G276100 Theobroma cacao HOM05D006872 ORTHO05D006261 6.0e-07 58.5 132 37.1
C03p03070 Brassica napus HOM05D010494 ORTHO05D006261 7.9e-07 58.2 125 36.0
CARHR207010 Cardamine hirsuta HOM05D010494 ORTHO05D006261 7.9e-07 58.2 142 36.6
AL6G16320 Arabidopsis lyrata HOM05D010494 ORTHO05D006261 1.0e-06 57.8 121 38.0
A03p02670 Brassica napus HOM05D010494 ORTHO05D006261 1.8e-06 57.0 122 36.9
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 1.8e-06 57.0 142 33.8
CARHR162280 Cardamine hirsuta HOM05D006872 ORTHO05D006261 1.8e-06 57.0 122 40.2
Gohir.D04G168500 Gossypium hirsutum HOM05D007970 ORTHO05D009943 1.8e-06 57.0 87 43.7
BraA03t09629Z Brassica rapa HOM05D010494 ORTHO05D006261 2.3e-06 56.6 125 35.2
Cfa005290 Carpinus fangiana HOM05D007970 ORTHO05D009943 2.3e-06 56.6 92 45.7
RcHm_v2.0_Chr6g0278991 Rosa chinensis HOM05D007970 ORTHO05D009943 2.3e-06 56.6 108 41.7
TWI75G1150 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 2.3e-06 56.6 60 48.3
CiPaw.05G085600 Carya illinoinensis HOM05D007970 ORTHO05D009943 3.0e-06 56.2 121 42.1
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 3.0e-06 56.2 63 60.3
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 3.9e-06 55.8 60 58.3
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 3.9e-06 55.8 85 47.1
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.9e-06 55.8 85 47.1
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 3.9e-06 55.8 85 47.1
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 3.9e-06 55.8 82 54.9
Actinidia20529 Actinidia chinensis HOM05D007970 ORTHO05D009943 5.1e-06 55.5 64 51.6
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 5.1e-06 55.5 122 36.9
Ciclev10030163m.g Citrus clementina HOM05D007970 ORTHO05D009943 5.1e-06 55.5 53 64.2
Haze_02097 Corylus avellana HOM05D007970 ORTHO05D009943 5.1e-06 55.5 92 44.6
FAN20G1196 Fragaria x ananassa HOM05D007970 ORTHO05D009943 5.1e-06 55.5 85 47.1
Manes.04G070700 Manihot esculenta HOM05D007970 ORTHO05D009943 5.1e-06 55.5 107 43.9
Potri.004G178101 Populus trichocarpa HOM05D007970 ORTHO05D009943 5.1e-06 55.5 138 40.6
Actinidia18037 Actinidia chinensis HOM05D007970 ORTHO05D009943 6.7e-06 55.1 86 43.0
BcaB01g05730 Brassica carinata HOM05D010494 ORTHO05D006261 6.7e-06 55.1 150 36.0
Prupe.8G169400 Prunus persica HOM05D007970 ORTHO05D009943 6.7e-06 55.1 90 45.6
Cpa.g.sc20.116 Carica papaya HOM05D007970 ORTHO05D009943 8.7e-06 54.7 51 66.7
FAN27G0083 Fragaria x ananassa HOM05D007970 ORTHO05D009943 8.7e-06 54.7 85 45.9


User provided reference genes

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