Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 7.5e-29 129.8 64 100.0
RcHm_v2.0_Chr3g0474991 Rosa chinensis HOM05D007252 ORTHO05D009074 9.5e-24 112.8 64 84.4
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 4.7e-23 110.5 62 87.1
FAN09G1620 Fragaria x ananassa HOM05D007252 ORTHO05D009074 5.2e-22 107.1 64 81.2
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 1.6e-18 95.5 62 69.4
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 4.6e-18 94.0 61 70.5
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 5.9e-18 93.6 64 68.8
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 1.3e-17 92.4 62 67.7
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 1.7e-17 92.0 64 67.2
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 1.7e-17 92.0 62 72.6
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 8.6e-17 89.7 62 69.4
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 5.6e-16 87.0 61 62.3
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 9.5e-16 86.3 62 64.5
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 9.5e-16 86.3 62 64.5
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 9.5e-16 86.3 62 64.5
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.2e-15 85.9 59 64.4
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 1.6e-15 85.5 62 64.5
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 4.7e-15 84.0 58 69.0
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 4.7e-15 84.0 62 62.9
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 6.2e-15 83.6 58 69.0
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 1.8e-14 82.0 58 67.2
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 1.8e-14 82.0 58 67.2
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 1.8e-14 82.0 58 67.2
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 5.2e-14 80.5 58 65.5
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 5.2e-14 80.5 58 65.5
Aa31LG3G4990 Aethionema arabicum HOM05D007252 ORTHO05D009074 8.9e-14 79.7 62 66.1
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 8.9e-14 79.7 60 60.0
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 1.2e-13 79.3 61 63.9
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 2.0e-13 78.6 57 66.7
Lalb_Chr21g0315921 Lupinus albus HOM05D007252 ORTHO05D009074 3.4e-13 77.8 62 58.1
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 4.4e-13 77.4 62 58.1
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 1.7e-12 75.5 57 63.2
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 4.9e-12 73.9 48 70.8
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 6.4e-12 73.6 57 59.6
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 1.4e-11 72.4 62 54.8
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 1.4e-11 72.4 57 59.6
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.9e-11 72.0 57 56.1
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.4e-11 71.6 57 59.6
Glyma.02G200400 Glycine max HOM05D007252 ORTHO05D009074 2.4e-11 71.6 64 50.0
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.4e-11 71.6 57 56.1
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 4.1e-11 70.9 58 58.6
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 4.1e-11 70.9 57 56.1
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 7.0e-11 70.1 63 49.2
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 60.4
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 60.4
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 1.6e-10 68.9 53 60.4
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 4.6e-10 67.4 57 54.4
Glyma.10G076300 Glycine max HOM05D007252 ORTHO05D009074 4.6e-10 67.4 58 51.7
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 6.0e-10 67.0 57 56.1
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 7.8e-10 66.6 57 54.4
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 7.8e-10 66.6 57 52.6
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 58.5
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 58.5
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 58.5
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 58.5
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 58.5
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 58.5
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 1.0e-09 66.2 57 54.4
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 1.0e-09 66.2 53 58.5
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 1.0e-09 66.2 58 51.7
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 1.0e-09 66.2 58 58.6
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 58.5
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 1.3e-09 65.9 57 54.4
CsaV3_6G040900 Cucumis sativus L. HOM05D007252 ORTHO05D009074 1.3e-09 65.9 61 54.1
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 2.3e-09 65.1 53 58.5
Sabra06G0159800 Salix brachista HOM05D002789 ORTHO05D009074 2.3e-09 65.1 47 61.7
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 2.3e-09 65.1 62 51.6
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 3.0e-09 64.7 53 58.5
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 3.0e-09 64.7 53 58.5
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 3.0e-09 64.7 53 58.5
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 3.0e-09 64.7 53 56.6
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.0e-09 64.7 57 52.6
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 3.0e-09 64.7 53 56.6
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 3.9e-09 64.3 53 56.6
Phvul.007G231000 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 5.0e-09 63.9 61 44.3
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 5.0e-09 63.9 50 56.0
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 5.0e-09 63.9 55 54.5
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 6.6e-09 63.5 53 58.5
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 8.6e-09 63.2 57 54.4
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 1.1e-08 62.8 57 50.9
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 1.5e-08 62.4 52 57.7
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 1.5e-08 62.4 53 56.6
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 1.5e-08 62.4 53 56.6
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 1.9e-08 62.0 57 52.6
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 1.9e-08 62.0 57 49.1
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 3.3e-08 61.2 65 47.7
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 4.3e-08 60.8 55 47.3
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 4.3e-08 60.8 53 50.9
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 5.6e-08 60.5 57 50.9
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 5.6e-08 60.5 57 50.9
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 5.6e-08 60.5 57 50.9
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 7.3e-08 60.1 57 49.1
ClCG04G010260 Citrullus lanatus HOM05D007252 ORTHO05D009074 9.5e-08 59.7 54 55.6
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.2e-07 59.3 57 49.1
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.2e-07 59.3 57 49.1
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.2e-07 59.3 57 49.1
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 1.6e-07 58.9 53 50.9
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 1.6e-07 58.9 56 48.2
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.6e-07 58.9 57 49.1
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 2.1e-07 58.5 57 50.9
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 4.7e-07 57.4 57 47.4
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 1.4e-06 55.8 57 43.9
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 1.4e-06 55.8 58 44.8
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 1.8e-06 55.5 44 56.8
Lsat_1_v5_gn_1_58000 Lactuca sativa HOM05D006095 ORTHO05D001225 2.3e-06 55.1 43 62.8
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 3.1e-06 54.7 57 47.4
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 6.8e-06 53.5 53 43.4
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 8.9e-06 53.1 53 47.2


User provided reference genes

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