Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 2.5e-92 342.0 165 100.0
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 4.4e-57 224.9 159 73.6
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 1.9e-55 219.5 155 73.5
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 9.2e-47 190.7 155 64.5
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 3.5e-46 188.7 172 58.1
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.0e-46 188.0 158 64.6
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 1.0e-45 187.2 155 65.2
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.3e-45 186.8 158 63.9
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 5.1e-45 184.9 158 62.7
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 5.1e-45 184.9 172 57.6
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 6.6e-45 184.5 172 57.0
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.1e-44 183.7 155 64.5
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 1.2e-43 180.3 165 57.6
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 2.8e-43 179.1 173 56.6
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 2.8e-43 179.1 173 56.6
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 8.1e-43 177.6 162 58.6
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 1.1e-42 177.2 141 66.0
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 5.2e-42 174.9 165 55.8
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 6.8e-42 174.5 166 55.4
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 1.2e-41 173.7 163 57.1
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 1.5e-41 173.3 160 55.6
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 2.0e-41 172.9 167 52.7
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 4.4e-41 171.8 162 58.0
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 5.8e-41 171.4 155 58.7
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 9.9e-41 170.6 166 54.2
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 9.9e-41 170.6 166 54.2
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.3e-40 170.2 155 56.8
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 1.7e-40 169.9 162 56.2
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 2.9e-40 169.1 162 56.8
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 4.9e-40 168.3 152 59.9
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 4.9e-40 168.3 162 54.3
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 4.9e-40 168.3 162 55.6
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 8.4e-40 167.5 155 57.4
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 1.1e-39 167.2 170 57.1
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.4e-39 166.8 162 54.9
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.4e-39 166.8 163 54.6
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 5.4e-39 164.9 163 54.6
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 5.4e-39 164.9 166 54.2
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 5.4e-39 164.9 162 55.6
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 7.1e-39 164.5 159 57.2
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 9.2e-39 164.1 140 57.9
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-38 163.7 155 55.5
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 1.2e-38 163.7 155 55.5
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.6e-38 163.3 162 53.7
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.6e-38 163.3 155 56.1
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 1.6e-38 163.3 165 52.7
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 2.7e-38 162.5 143 58.0
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 4.6e-38 161.8 213 46.0
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 6.0e-38 161.4 146 56.8
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 7.8e-38 161.0 154 56.5
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 7.8e-38 161.0 161 55.9
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 7.8e-38 161.0 156 56.4
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 1.7e-37 159.8 179 51.4
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 2.3e-37 159.5 162 54.9
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 3.0e-37 159.1 156 54.5
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 3.9e-37 158.7 137 61.3
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.5e-36 156.8 158 54.4
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.5e-36 156.8 149 56.4
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 1.9e-36 156.4 165 53.9
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 2.5e-36 156.0 155 55.5
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 3.3e-36 155.6 138 58.7
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 4.3e-36 155.2 162 51.9
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 4.3e-36 155.2 162 53.7
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.2e-35 153.7 166 50.6
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 4.7e-35 151.8 156 53.8
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 4.7e-35 151.8 140 57.9
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.1e-34 150.6 162 49.4
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.0e-34 148.7 144 54.2
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 4.0e-34 148.7 145 52.4
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 8.9e-34 147.5 166 48.2
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 8.9e-34 147.5 166 48.2
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.2e-33 147.1 167 49.1
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 1.2e-33 147.1 162 48.1
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.5e-33 146.7 164 51.2
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.5e-33 146.7 161 49.1
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.5e-33 146.7 166 50.0
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.0e-33 146.4 144 53.5
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.0e-33 146.4 145 53.1
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.6e-33 146.0 164 50.0
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 4.4e-33 145.2 163 49.1
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 7.6e-33 144.4 165 53.3
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 9.9e-33 144.1 166 48.2
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 9.9e-33 144.1 166 47.6
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.7e-32 143.3 162 48.1
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 3.8e-32 142.1 147 53.1
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 4.9e-32 141.7 162 48.1
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 6.4e-32 141.4 145 50.3
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 8.4e-32 141.0 167 47.9
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.4e-31 140.2 174 46.6
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.4e-31 139.4 140 51.4
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 5.4e-31 138.3 162 48.1
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 5.4e-31 138.3 158 50.0
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.2e-30 137.1 145 49.0
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 4.6e-30 135.2 91 71.4
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.0e-30 134.8 141 50.4
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 6.0e-30 134.8 157 48.4
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 7.8e-30 134.4 160 44.4
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 1.0e-29 134.0 138 52.9
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 2.3e-29 132.9 162 47.5
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.3e-29 132.9 148 50.7
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.0e-29 132.5 91 70.3
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 8.7e-29 131.0 160 48.1
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 1.5e-28 130.2 140 51.4
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 2.1e-27 126.3 140 50.7
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 2.1e-27 126.3 98 62.2
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 2.8e-27 125.9 140 50.7
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.8e-27 125.9 144 50.0
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.8e-27 125.9 98 62.2
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 6.2e-27 124.8 135 45.2
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 4.0e-26 122.1 139 50.4
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 4.0e-26 122.1 140 47.1
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 6.9e-26 121.3 132 47.7
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 9.0e-26 120.9 161 46.0
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 7.6e-25 117.9 88 65.9
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 2.7e-22 109.4 167 40.7
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 4.6e-22 108.6 153 40.5
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 6.0e-22 108.2 153 39.9
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 1.0e-21 107.5 130 47.7
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 1.6e-19 100.1 171 38.6
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 6.2e-19 98.2 65 64.6
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 4.0e-18 95.5 163 39.3
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 9.9e-17 90.9 132 40.2
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 1.1e-15 87.4 159 35.8
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.4e-15 87.0 162 37.7
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.4e-15 87.0 111 45.0
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 7.1e-15 84.7 75 52.0
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 7.1e-15 84.7 114 46.5
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 2.7e-14 82.8 66 54.5
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 3.5e-14 82.4 149 37.6
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 4.6e-14 82.0 159 36.5
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.9e-12 76.6 122 38.5
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 1.5e-09 67.0 90 43.3
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 2.0e-09 66.6 85 43.5
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 3.2e-07 59.3 62 53.2


User provided reference genes

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