Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1027100 Malus domestica HOM05D007825 ORTHO05D009693 4.0e-34 147.9 96 100.0
MD12G1027000 Malus domestica HOM05D007825 ORTHO05D009693 2.3e-29 132.1 96 79.2
Prupe.7G104600 Prunus persica HOM05D007825 ORTHO05D009693 2.9e-24 115.2 94 68.1
MD12G1088600 Malus domestica HOM05D007825 ORTHO05D009693 6.2e-19 97.4 96 71.9
Thecc.05G090800 Theobroma cacao HOM05D007825 ORTHO05D009693 5.8e-17 90.9 92 55.4
Cpa.g.sc5.6 Carica papaya HOM05D007825 ORTHO05D009693 3.2e-15 85.1 95 55.8
COL.COLO4_29710 Corchorus olitorius HOM05D007825 ORTHO05D009693 3.2e-15 85.1 94 63.8
Atru.chr2.2492 Acer truncatum HOM05D007825 ORTHO05D009693 9.2e-15 83.6 90 55.6
Dinv31697 Davidia involucrata HOM05D007825 ORTHO05D009693 9.2e-15 83.6 95 50.5
Actinidia07924 Actinidia chinensis HOM05D001354 ORTHO05D007486 3.5e-14 81.6 92 54.3
TWI74G1133 Tripterygium wilfordii HOM05D007825 ORTHO05D009693 3.5e-14 81.6 94 52.1
Rhsim03G0074400 Rhododendron simsii HOM05D001257 ORTHO05D007181 7.8e-14 80.5 94 52.1
CiPaw.09G015200 Carya illinoinensis HOM05D007825 ORTHO05D009693 1.3e-13 79.7 95 56.8
Cc06_g05960 Coffea canephora HOM05D007825 ORTHO05D009693 1.7e-13 79.3 91 49.5
CARHR162440 Cardamine hirsuta HOM05D007825 ORTHO05D009693 2.3e-13 79.0 91 52.7
Duzib093G1765 Durio zibethinus HOM05D007825 ORTHO05D009693 3.0e-13 78.6 91 52.7
FAN05G0267 Fragaria x ananassa HOM05D007825 ORTHO05D009693 3.0e-13 78.6 95 56.8
TAR623G0830 Trochodendron aralioides HOM05D007825 ORTHO05D009693 3.0e-13 78.6 94 59.6
FAN14G3782 Fragaria x ananassa HOM05D007825 ORTHO05D009693 5.1e-13 77.8 95 57.9
QL07p038635 Quercus lobata HOM05D007825 ORTHO05D009693 5.1e-13 77.8 94 50.0
Eucgr.A02998 Eucalyptus grandis HOM05D007825 ORTHO05D009693 8.6e-13 77.0 95 49.5
TPR.G9902 Trifolium pratense HOM05D007825 ORTHO05D009693 8.6e-13 77.0 96 47.9
BcaB01g00352 Brassica carinata HOM05D007825 ORTHO05D009693 1.1e-12 76.6 93 51.6
BcaC07g39631 Brassica carinata HOM05D007825 ORTHO05D009693 1.1e-12 76.6 93 51.6
A09p45710 Brassica napus HOM05D007825 ORTHO05D009693 1.1e-12 76.6 93 51.6
BraA09t40032Z Brassica rapa HOM05D007825 ORTHO05D009693 1.1e-12 76.6 93 51.6
AL5G33400 Arabidopsis lyrata HOM05D007825 ORTHO05D009693 1.5e-12 76.3 91 51.6
C08p27910 Brassica napus HOM05D007825 ORTHO05D009693 1.5e-12 76.3 93 51.6
BolC8t50406H Brassica oleracea HOM05D007825 ORTHO05D009693 1.5e-12 76.3 93 51.6
Potri.016G078700 Populus trichocarpa HOM05D007825 ORTHO05D009693 1.5e-12 76.3 95 50.5
Lj5g0027478 Lotus japonicus HOM05D007825 ORTHO05D009693 1.9e-12 75.9 95 49.5
FAN02G3309 Fragaria x ananassa HOM05D007825 ORTHO05D009693 3.3e-12 75.1 95 56.8
FAN14G2292 Fragaria x ananassa HOM05D007825 ORTHO05D009693 3.3e-12 75.1 95 56.8
GSVIVG01033861001 Vitis vinifera HOM05D007825 ORTHO05D009693 3.3e-12 75.1 96 45.8
Sabra16G0083000 Salix brachista HOM05D007825 ORTHO05D009693 9.6e-12 73.6 94 45.7
arahy.Tifrunner.gnm1.ann1.KBFV5H Arachis hypogaea HOM05D001354 ORTHO05D007486 1.2e-11 73.2 94 56.4
Sp5g09670 Schrenkiella parvula HOM05D007825 ORTHO05D009693 1.2e-11 73.2 93 48.4
BcaB02g07824 Brassica carinata HOM05D007825 ORTHO05D009693 1.6e-11 72.8 93 49.5
Glyma.13G154500 Glycine max HOM05D007825 ORTHO05D009693 1.6e-11 72.8 95 50.5
Manes.09G054200 Manihot esculenta HOM05D007825 ORTHO05D009693 2.1e-11 72.4 93 45.2
Haze_12107 Corylus avellana HOM05D001354 ORTHO05D007486 2.8e-11 72.0 95 55.8
Sabra06G0163100 Salix brachista HOM05D001354 ORTHO05D007486 2.8e-11 72.0 93 46.2
SalBow3G1626 Salvia bowleyana HOM05D007825 ORTHO05D009693 2.8e-11 72.0 109 43.1
Solyc09g009930.2 Solanum lycopersicum HOM05D007825 ORTHO05D009693 2.8e-11 72.0 94 48.9
THA.LOC104799760 Tarenaya hassleriana HOM05D007825 ORTHO05D009693 2.8e-11 72.0 94 44.7
Sopen09g004680 Solanum pennellii HOM05D007825 ORTHO05D009693 3.6e-11 71.6 93 49.5
Glyma.19G194978 Glycine max HOM05D007825 ORTHO05D009693 4.7e-11 71.2 96 45.8
Lalb_Chr10g0096381 Lupinus albus HOM05D007825 ORTHO05D009693 4.7e-11 71.2 97 52.6
Thhalv10010896m.g Eutrema salsugineum HOM05D007825 ORTHO05D009693 6.2e-11 70.9 93 48.4
Potri.006G211600 Populus trichocarpa HOM05D007825 ORTHO05D009693 6.2e-11 70.9 93 45.2
Medtr1g059820 Medicago truncatula HOM05D007825 ORTHO05D009693 8.1e-11 70.5 95 45.3
TAR633G2289 Trochodendron aralioides HOM05D007825 ORTHO05D009693 8.1e-11 70.5 93 59.1
AT3G52620 Arabidopsis thaliana HOM05D007825 ORTHO05D009693 1.1e-10 70.1 93 47.3
arahy.Tifrunner.gnm1.ann1.S2NT6M Arachis hypogaea HOM05D007825 ORTHO05D009693 1.4e-10 69.7 90 56.7
Ca_00897_v3 Cicer arietinum L. HOM05D007825 ORTHO05D009693 1.8e-10 69.3 95 44.2
EL10Ac7g16903 Beta vulgaris HOM05D007825 ORTHO05D009693 2.4e-10 68.9 95 46.3
Migut.J01022 Erythranthe guttata HOM05D007825 ORTHO05D009693 2.4e-10 68.9 97 57.7
Glyma.09G026600 Glycine max HOM05D007825 ORTHO05D009693 3.1e-10 68.6 95 60.0
Glyma.10G074000 Glycine max HOM05D007825 ORTHO05D009693 3.1e-10 68.6 95 60.0
Nn2g14176 Nelumbo nucifera HOM05D007825 ORTHO05D009693 4.0e-10 68.2 96 56.2
RcHm_v2.0_Chr3g0474201 Rosa chinensis HOM05D007825 ORTHO05D009693 4.0e-10 68.2 95 54.7
Aqoxy4G02759 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 6.8e-10 67.4 96 52.1
PGSC0003DMG400008872 Solanum tuberosum HOM05D007825 ORTHO05D009693 6.8e-10 67.4 93 55.9
Lalb_Chr17g0338831 Lupinus albus HOM05D007825 ORTHO05D009693 8.9e-10 67.0 92 48.9
Carub.0005s1904 Capsella rubella HOM05D007825 ORTHO05D009693 1.2e-09 66.6 93 47.3
Phvul.003G041100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 1.2e-09 66.6 95 56.8
Aqoxy2G01123 Aquilegia oxysepala HOM05D007825 ORTHO05D009693 2.0e-09 65.9 91 47.3
Lalb_Chr02g0154901 Lupinus albus HOM05D007825 ORTHO05D009693 2.6e-09 65.5 95 47.4
Psat3g207080 Pisum sativum HOM05D007825 ORTHO05D009693 3.4e-09 65.1 95 45.3
Aa31LG10G7690 Aethionema arabicum HOM05D007825 ORTHO05D009693 5.8e-09 64.3 91 46.2
MBI17_g08331_MAGBIO Magnolia biondii HOM05D007825 ORTHO05D009693 2.9e-08 62.0 90 42.2
Peaxi162Scf00404g00115 Petunia axillaris HOM05D007825 ORTHO05D009693 2.9e-08 62.0 95 50.5
Phvul.001G191100 Phaseolus vulgaris HOM05D007825 ORTHO05D009693 2.9e-08 62.0 96 41.7
Cfa009073 Carpinus fangiana HOM05D007825 ORTHO05D009693 3.8e-08 61.6 95 53.7
CsaV3_3G037370 Cucumis sativus L. HOM05D007825 ORTHO05D009693 3.8e-08 61.6 91 51.6
Ah.15g090680 Amaranthus hybridus HOM05D007825 ORTHO05D009693 1.4e-07 59.7 94 42.6
ClCG10G018870 Citrullus lanatus HOM05D007825 ORTHO05D009693 1.9e-07 59.3 91 52.7
MELO3C009481.2 Cucumis melo HOM05D007825 ORTHO05D009693 1.9e-07 59.3 91 54.9
AUR62006195 Chenopodium quinoa HOM05D007825 ORTHO05D009693 3.2e-07 58.5 94 39.4
arahy.Tifrunner.gnm1.ann1.24RTVW Arachis hypogaea HOM05D007825 ORTHO05D009693 5.4e-07 57.8 95 53.7
arahy.Tifrunner.gnm1.ann1.L43FYW Arachis hypogaea HOM05D007825 ORTHO05D009693 5.4e-07 57.8 95 53.7
Sc07g0005630 Simmondsia chinensis HOM05D007825 ORTHO05D009693 7.1e-07 57.4 94 42.6
DCAR_013397 Daucus carota HOM05D007825 ORTHO05D009693 4.6e-06 54.7 93 36.6
unitig_578.g16364 Utricularia gibba HOM05D001354 ORTHO05D007486 4.6e-06 54.7 94 37.2


User provided reference genes

Program Settings