Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1025500 Malus domestica HOM05D002400 ORTHO05D002568 1.8e-119 432.6 212 100.0
Prupe.7G105600 Prunus persica HOM05D002400 ORTHO05D002568 3.6e-43 179.1 157 56.1
MD14G1025600 Malus domestica HOM05D002400 ORTHO05D002568 5.7e-41 171.8 157 56.7
MD14G1025200 Malus domestica HOM05D002400 ORTHO05D002568 2.1e-35 153.3 160 54.4
RcHm_v2.0_Chr3g0474031 Rosa chinensis HOM05D002400 ORTHO05D002568 4.8e-32 142.1 161 49.1
FvH4_6g19030 Fragaria vesca HOM05D002400 ORTHO05D002568 8.2e-32 141.4 161 50.3
MD14G1025400 Malus domestica HOM05D002400 ORTHO05D002568 1.4e-31 140.6 155 48.4
FAN09G4576 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.3e-31 138.7 161 49.7
FAN02G4410 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.1e-31 137.9 161 49.1
FAN14G2096 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.1e-31 137.9 161 49.1
RcHm_v2.0_Chr3g0474111 Rosa chinensis HOM05D002400 ORTHO05D002568 1.6e-30 137.1 159 50.3
MD14G1025300 Malus domestica HOM05D002400 ORTHO05D002568 2.7e-30 136.3 156 49.4
RcHm_v2.0_Chr3g0474171 Rosa chinensis HOM05D002400 ORTHO05D002568 4.5e-30 135.6 167 49.7
FvH4_6g19090 Fragaria vesca HOM05D002400 ORTHO05D002568 3.8e-29 132.5 169 45.0
RcHm_v2.0_Chr3g0474091 Rosa chinensis HOM05D002400 ORTHO05D002568 6.5e-29 131.7 166 45.8
FvH4_5g26410 Fragaria vesca HOM05D002400 ORTHO05D002568 8.5e-29 131.3 151 45.7
FAN18G2424 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.1e-28 131.0 151 45.7
RcHm_v2.0_Chr3g0474041 Rosa chinensis HOM05D002400 ORTHO05D002568 1.1e-28 131.0 158 48.7
FAN18G0566 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.5e-28 130.6 159 44.0
RcHm_v2.0_Chr7g0217281 Rosa chinensis HOM05D002400 ORTHO05D002568 1.5e-28 130.6 151 46.4
FAN14G5794 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.9e-28 130.2 169 44.4
MD12G1026400 Malus domestica HOM05D002400 ORTHO05D002568 3.2e-28 129.4 157 49.7
MD14G1024900 Malus domestica HOM05D002400 ORTHO05D002568 2.1e-27 126.7 160 47.5
FvH4_1g23521 Fragaria vesca HOM05D002400 ORTHO05D002568 4.7e-27 125.6 152 45.4
RcHm_v2.0_Chr3g0474131 Rosa chinensis HOM05D002400 ORTHO05D002568 4.7e-27 125.6 158 47.5
FAN05G4159 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.1e-27 125.2 158 44.9
FAN14G4031 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.1e-27 125.2 158 45.6
MD14G1026700 Malus domestica HOM05D002400 ORTHO05D002568 2.3e-26 123.2 157 49.7
Prupe.7G108600 Prunus persica HOM05D002400 ORTHO05D002568 2.3e-26 123.2 155 44.5
FvH4_6g33960 Fragaria vesca HOM05D002400 ORTHO05D002568 4.0e-26 122.5 170 44.7
MD00G1221800 Malus domestica HOM05D002400 ORTHO05D002568 4.0e-26 122.5 136 50.7
FvH4_6g19040 Fragaria vesca HOM05D002400 ORTHO05D002568 5.2e-26 122.1 158 48.1
MD14G1025100 Malus domestica HOM05D002400 ORTHO05D002568 5.2e-26 122.1 137 50.4
Prupe.2G052100 Prunus persica HOM05D002400 ORTHO05D002568 6.8e-26 121.7 158 45.6
Prupe.7G104900 Prunus persica HOM05D002400 ORTHO05D002568 1.2e-25 120.9 155 49.0
FAN09G2919 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.0e-25 120.2 157 47.8
FvH4_6g18953 Fragaria vesca HOM05D002400 ORTHO05D002568 4.4e-25 119.0 155 47.1
FvH4_6g19020 Fragaria vesca HOM05D002400 ORTHO05D002568 7.5e-25 118.2 158 44.9
MD04G1058800 Malus domestica HOM05D002400 ORTHO05D002568 9.8e-25 117.9 162 43.2
Prupe.7G104800 Prunus persica HOM05D002400 ORTHO05D002568 9.8e-25 117.9 158 45.6
MD14G1026400 Malus domestica HOM05D002400 ORTHO05D002568 1.3e-24 117.5 164 45.7
MD14G1026000 Malus domestica HOM05D002400 ORTHO05D002568 2.8e-24 116.3 163 44.2
Prupe.6G269600 Prunus persica HOM05D002400 ORTHO05D002568 4.8e-24 115.5 155 45.8
MD14G1026300 Malus domestica HOM05D002400 ORTHO05D002568 6.3e-24 115.2 164 45.7
RcHm_v2.0_Chr5g0068981 Rosa chinensis HOM05D002400 ORTHO05D002568 6.3e-24 115.2 167 43.7
MD12G1025400 Malus domestica HOM05D002400 ORTHO05D002568 1.4e-23 114.0 158 43.0
MD14G1024100 Malus domestica HOM05D002400 ORTHO05D002568 1.4e-23 114.0 156 41.7
FAN09G1471 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.8e-23 113.6 158 42.4
MD04G1145500 Malus domestica HOM05D002400 ORTHO05D002568 1.8e-23 113.6 166 43.4
RcHm_v2.0_Chr2g0157031 Rosa chinensis HOM05D002400 ORTHO05D002568 1.8e-23 113.6 167 43.1
FAN19G0785 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.1e-23 112.8 155 44.5
FAN26G2620 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.0e-23 111.7 155 44.5
MD14G1025800 Malus domestica HOM05D002400 ORTHO05D002568 7.0e-23 111.7 161 44.1
FAN05G4425 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.1e-23 111.3 158 43.0
FAN09G2665 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.1e-23 111.3 158 43.0
FAN18G4571 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.1e-23 111.3 157 40.8
FAN14G3084 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.0e-22 110.2 158 42.4
FvH4_6g19010 Fragaria vesca HOM05D002400 ORTHO05D002568 2.7e-22 109.8 158 42.4
FvH4_5g20530 Fragaria vesca HOM05D002400 ORTHO05D002568 4.5e-22 109.0 157 38.2
FvH4_6g18920 Fragaria vesca HOM05D002400 ORTHO05D002568 4.5e-22 109.0 158 39.9
RcHm_v2.0_Chr7g0205961 Rosa chinensis HOM05D002400 ORTHO05D002568 4.5e-22 109.0 166 39.8
RcHm_v2.0_Chr3g0474191 Rosa chinensis HOM05D002400 ORTHO05D002568 5.9e-22 108.6 162 42.0
RcHm_v2.0_Chr3g0458171 Rosa chinensis HOM05D002400 ORTHO05D002568 1.3e-21 107.5 164 40.2
RcHm_v2.0_Chr3g0473961 Rosa chinensis HOM05D002400 ORTHO05D002568 1.3e-21 107.5 162 40.1
RcHm_v2.0_Chr3g0473911 Rosa chinensis HOM05D002400 ORTHO05D002568 2.2e-21 106.7 161 40.4
RcHm_v2.0_Chr7g0205891 Rosa chinensis HOM05D002400 ORTHO05D002568 8.5e-21 104.8 159 38.4
Prupe.7G108700 Prunus persica HOM05D002400 ORTHO05D002568 1.9e-20 103.6 163 39.3
RcHm_v2.0_Chr3g0474001 Rosa chinensis HOM05D002400 ORTHO05D002568 1.9e-20 103.6 160 41.2
FAN18G0377 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.5e-20 103.2 166 39.2
Prupe.1G551800 Prunus persica HOM05D002400 ORTHO05D002568 2.5e-20 103.2 158 41.8
MD12G1201900 Malus domestica HOM05D002400 ORTHO05D002568 4.2e-20 102.4 157 45.2
FAN05G1326 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.2e-20 101.7 160 37.5
FAN05G2337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.2e-20 101.7 166 39.2
RcHm_v2.0_Chr5g0069001 Rosa chinensis HOM05D002400 ORTHO05D002568 7.2e-20 101.7 167 39.5
FAN09G4054 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-19 100.9 161 38.5
MD14G1026600 Malus domestica HOM05D002400 ORTHO05D002568 1.2e-19 100.9 168 41.7
FvH4_5g32301 Fragaria vesca HOM05D002400 ORTHO05D002568 2.7e-19 99.8 176 39.8
FvH4_6g05280 Fragaria vesca HOM05D002400 ORTHO05D002568 2.7e-19 99.8 160 38.1
FAN14G5637 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.6e-19 99.4 160 38.1
FAN05G0221 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.0e-19 98.2 169 39.6
FvH4_6g19053 Fragaria vesca HOM05D002400 ORTHO05D002568 1.0e-18 97.8 160 38.1
FAN05G0305 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.0e-18 97.8 166 38.6
RcHm_v2.0_Chr1g0330111 Rosa chinensis HOM05D002400 ORTHO05D002568 1.4e-18 97.4 158 41.8
Prupe.6G311700 Prunus persica HOM05D002400 ORTHO05D002568 1.8e-18 97.1 154 43.5
FAN09G3427 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.0e-18 96.3 169 39.6
FAN14G2111 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.0e-18 96.3 161 41.0
FvH4_6g19051 Fragaria vesca HOM05D002400 ORTHO05D002568 5.2e-18 95.5 154 38.3
MD12G1202000 Malus domestica HOM05D002400 ORTHO05D002568 5.2e-18 95.5 159 39.0
FvH4_5g20611 Fragaria vesca HOM05D002400 ORTHO05D002568 8.8e-18 94.7 166 38.0
FvH4_6g22710 Fragaria vesca HOM05D002400 ORTHO05D002568 8.8e-18 94.7 167 38.9
FAN14G2794 Fragaria x ananassa HOM05D002400 ORTHO05D002568 8.8e-18 94.7 167 38.9
QL02p059625 Quercus lobata HOM05D002400 ORTHO05D002568 8.8e-18 94.7 154 38.3
FAN14G3389 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-17 94.4 160 37.5
Prupe.6G311500 Prunus persica HOM05D002400 ORTHO05D002568 1.2e-17 94.4 156 42.3
RcHm_v2.0_Chr3g0474141 Rosa chinensis HOM05D002400 ORTHO05D002568 2.6e-17 93.2 166 42.2
FAN04G1411 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.4e-17 92.8 159 40.9
FAN14G5260 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.4e-17 92.4 169 37.9
FAN06G1151 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.7e-17 92.0 158 41.1
FAN04G1392 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.8e-17 91.3 177 34.5
MD05G1234100 Malus domestica HOM05D002400 ORTHO05D002568 2.2e-16 90.1 168 33.9
FAN02G2106 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.8e-16 89.7 150 38.7
MD15G1012200 Malus domestica HOM05D002400 ORTHO05D002568 2.8e-16 89.7 164 36.6
FAN10G1459 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.7e-16 89.4 159 40.3
RcHm_v2.0_Chr3g0481121 Rosa chinensis HOM05D002400 ORTHO05D002568 4.9e-16 89.0 154 39.0
RcHm_v2.0_Chr3g0474011 Rosa chinensis HOM05D002400 ORTHO05D002568 6.3e-16 88.6 110 50.0
FAN03G0307 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.1e-15 87.8 159 40.3
FvH4_7g04740 Fragaria vesca HOM05D002400 ORTHO05D002568 1.8e-15 87.0 159 39.6
FAN06G1414 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.4e-15 86.7 159 39.6
FAN04G0973 Fragaria x ananassa HOM05D002400 ORTHO05D002568 4.1e-15 85.9 155 32.3
RcHm_v2.0_Chr7g0193261 Rosa chinensis HOM05D002400 ORTHO05D002568 4.1e-15 85.9 164 37.2
FAN09G1480 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.0e-15 85.1 163 35.0
FAN18G0337 Fragaria x ananassa HOM05D002400 ORTHO05D002568 9.2e-15 84.7 182 35.2
Prupe.5G196300 Prunus persica HOM05D002400 ORTHO05D002568 2.0e-14 83.6 158 36.1
FAN06G4070 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.7e-14 83.2 159 39.0
vmacro12117 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 2.7e-14 83.2 159 32.7
FAN08G3088 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.9e-14 82.0 169 36.1
FvH4_5g29160 Fragaria vesca HOM05D002400 ORTHO05D002568 1.0e-13 81.3 182 34.1
Prupe.7G105700 Prunus persica HOM05D002400 ORTHO05D002568 1.0e-13 81.3 108 46.3
vmacro05682 Vaccinium macrocarpon HOM05D002400 ORTHO05D002568 1.3e-13 80.9 170 33.5
RcHm_v2.0_Chr3g0475381 Rosa chinensis HOM05D002400 ORTHO05D002568 5.0e-13 79.0 136 37.5
FAN14G5626 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.6e-13 78.6 86 52.3
RcHm_v2.0_Chr3g0475391 Rosa chinensis HOM05D002400 ORTHO05D002568 6.6e-13 78.6 173 33.5
MD14G1157200 Malus domestica HOM05D002400 ORTHO05D002568 8.6e-13 78.2 160 37.5
FvH4_6g18950 Fragaria vesca HOM05D002400 ORTHO05D002568 1.5e-12 77.4 102 42.2
FAN18G1895 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.9e-12 77.0 155 35.5
FAN08G0492 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.3e-12 76.3 155 34.8
FAN05G1596 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.3e-12 75.1 163 35.0
Cfa012832 Carpinus fangiana HOM05D002400 ORTHO05D002568 9.5e-12 74.7 167 35.3
Cfa017093 Carpinus fangiana HOM05D002400 ORTHO05D002568 9.5e-12 74.7 163 33.1
FAN14G4887 Fragaria x ananassa HOM05D002400 ORTHO05D002568 1.2e-11 74.3 159 34.6
RcHm_v2.0_Chr7g0205901 Rosa chinensis HOM05D002400 ORTHO05D002568 1.6e-11 73.9 108 41.7
FAN13G3133 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.1e-11 73.6 133 31.6
FAN08G1360 Fragaria x ananassa HOM05D002400 ORTHO05D002568 2.8e-11 73.2 166 34.3
RcHm_v2.0_Chr7g0205941 Rosa chinensis HOM05D002400 ORTHO05D002568 3.6e-11 72.8 114 37.7
FvH4_6g08300 Fragaria vesca HOM05D002400 ORTHO05D002568 6.1e-11 72.0 163 35.0
FAN14G3017 Fragaria x ananassa HOM05D002400 ORTHO05D002568 6.1e-11 72.0 163 35.0
Cfa000125 Carpinus fangiana HOM05D002400 ORTHO05D002568 1.4e-10 70.9 168 33.9
Manes.09G032300 Manihot esculenta HOM05D002400 ORTHO05D002568 1.4e-10 70.9 158 36.7
Haze_21106 Corylus avellana HOM05D002400 ORTHO05D002568 1.8e-10 70.5 163 31.9
FvH4_5g26390 Fragaria vesca HOM05D002400 ORTHO05D002568 3.0e-10 69.7 96 42.7
FvH4_1g16170 Fragaria vesca HOM05D002400 ORTHO05D002568 4.0e-10 69.3 63 52.4
FAN18G0208 Fragaria x ananassa HOM05D002400 ORTHO05D002568 5.2e-10 68.9 88 42.0
Prupe.7G106400 Prunus persica HOM05D002400 ORTHO05D002568 1.3e-08 64.3 84 42.9
FvH4_6g33902 Fragaria vesca HOM05D002400 ORTHO05D002568 2.2e-08 63.5 105 39.0
FAN08G1320 Fragaria x ananassa HOM05D002400 ORTHO05D002568 3.7e-08 62.8 98 36.7
MD04G1145600 Malus domestica HOM05D002400 ORTHO05D002568 1.4e-07 60.8 67 52.2
FvH4_6g19370 Fragaria vesca HOM05D002400 ORTHO05D002568 4.1e-07 59.3 108 37.0
FAN14G5775 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.0e-07 58.5 108 37.0
FvH4_6g19361 Fragaria vesca HOM05D002400 ORTHO05D002568 1.6e-06 57.4 106 36.8
FvH4_5g20621 Fragaria vesca HOM05D002400 ORTHO05D002568 4.6e-06 55.8 63 42.9
FAN14G5714 Fragaria x ananassa HOM05D002400 ORTHO05D002568 7.8e-06 55.1 106 34.9


User provided reference genes

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