Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 1.7e-224 782.3 390 100.0
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 2.2e-168 595.9 417 77.0
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 2.5e-159 565.8 420 73.8
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 9.5e-151 537.3 420 69.5
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 2.1e-150 536.2 420 69.5
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 2.8e-150 535.8 420 69.5
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 3.1e-149 532.3 420 69.0
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.5e-148 530.0 430 67.9
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 2.6e-148 529.3 419 69.0
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 4.4e-148 528.5 431 65.9
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 3.7e-147 525.4 430 67.0
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 1.9e-146 523.1 431 65.2
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 5.4e-146 521.5 425 67.1
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 6.0e-145 518.1 425 65.4
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 7.8e-145 517.7 446 63.9
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 3.0e-144 515.8 419 66.1
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 6.6e-144 514.6 420 66.2
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.9e-143 513.1 429 65.7
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 4.3e-143 511.9 419 65.6
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 1.4e-141 506.9 426 65.0
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 8.9e-141 504.2 420 65.5
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 2.0e-140 503.1 434 64.1
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 4.4e-140 501.9 420 65.2
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 6.4e-139 498.0 426 64.6
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 8.3e-139 497.7 426 63.8
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 3.2e-138 495.7 430 62.8
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 3.2e-138 495.7 383 68.4
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 3.2e-138 495.7 426 63.4
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 7.1e-138 494.6 428 62.1
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.2e-137 493.8 425 63.1
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 2.7e-137 492.7 428 61.9
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 3.5e-137 492.3 418 63.2
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 6.0e-137 491.5 426 63.6
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 7.8e-137 491.1 428 63.1
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 7.8e-137 491.1 420 63.1
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.7e-136 490.0 402 65.9
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 3.0e-136 489.2 424 63.0
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 5.1e-136 488.4 429 62.0
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 8.6e-136 487.6 425 62.4
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 8.6e-136 487.6 424 62.7
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 8.6e-136 487.6 414 63.3
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 1.1e-135 487.3 439 61.3
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 1.1e-135 487.3 427 61.8
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.5e-135 486.9 424 62.0
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 1.9e-135 486.5 392 66.6
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 3.3e-135 485.7 451 61.0
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 3.3e-135 485.7 427 61.4
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 3.3e-135 485.7 414 62.6
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 5.6e-135 485.0 388 66.5
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 5.6e-135 485.0 414 62.6
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 9.5e-135 484.2 416 63.0
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 9.5e-135 484.2 428 61.0
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 1.2e-134 483.8 389 66.6
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 1.6e-134 483.4 419 62.3
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 2.1e-134 483.0 427 61.4
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 2.1e-134 483.0 417 62.8
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 3.6e-134 482.3 422 63.0
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 3.6e-134 482.3 425 60.9
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 3.6e-134 482.3 425 60.9
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 3.6e-134 482.3 372 68.3
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 4.7e-134 481.9 398 65.3
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 2.3e-133 479.6 421 62.2
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.2e-132 477.2 417 62.4
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.5e-132 476.9 452 58.6
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 2.0e-132 476.5 422 61.8
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 2.0e-132 476.5 364 69.0
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 5.8e-132 474.9 432 60.4
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.3e-131 473.8 366 68.0
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 6.4e-131 471.5 426 60.1
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 7.1e-130 468.0 385 64.2
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 9.2e-130 467.6 384 66.1
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 9.2e-130 467.6 378 64.8
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 1.6e-129 466.8 415 60.2
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 2.1e-129 466.5 450 57.3
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 7.8e-129 464.5 435 60.2
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 1.3e-128 463.8 372 65.1
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 6.6e-128 461.5 402 62.7
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 7.3e-127 458.0 428 59.3
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 9.6e-127 457.6 426 59.9
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 9.6e-127 457.6 461 57.5
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 6.2e-126 454.9 364 65.7
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 8.1e-126 454.5 415 58.1
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 3.1e-125 452.6 462 57.1
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 3.1e-125 452.6 368 63.9
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 4.0e-125 452.2 425 58.4
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 4.0e-125 452.2 415 58.3
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 8.9e-125 451.1 398 62.3
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 2.6e-124 449.5 361 65.1
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 2.6e-124 449.5 415 57.8
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 3.4e-124 449.1 416 58.7
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 3.4e-124 449.1 391 62.4
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 4.4e-124 448.7 445 55.5
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 1.3e-123 447.2 415 59.8
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 2.9e-123 446.0 359 65.2
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 6.4e-123 444.9 399 61.2
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 1.4e-122 443.7 426 56.8
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 9.3e-122 441.0 424 57.8
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 1.2e-121 440.7 369 63.1
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.6e-121 440.3 368 62.8
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 1.0e-120 437.6 412 58.3
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 1.3e-120 437.2 359 64.3
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 1.3e-120 437.2 359 64.3
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-120 436.8 359 63.8
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.7e-120 436.8 372 62.9
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 1.7e-120 436.8 372 62.9
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 2.3e-120 436.4 415 56.9
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 2.3e-120 436.4 415 56.9
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 3.9e-120 435.6 428 57.5
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 5.1e-120 435.3 422 56.9
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 7.6e-116 421.4 418 57.4
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 1.3e-115 420.6 339 66.4
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 2.9e-115 419.5 381 61.9
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 5.8e-108 395.2 401 55.9
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 3.8e-107 392.5 441 55.8
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.2e-105 387.5 352 60.5
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 6.9e-101 371.7 358 54.5
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 9.0e-101 371.3 367 54.2
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 1.2e-100 370.9 399 51.1
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 1.5e-92 344.0 271 67.2
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 3.4e-92 342.8 358 52.5
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 4.6e-89 332.4 340 56.2
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 3.7e-86 322.8 351 49.9
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 8.2e-86 321.6 343 54.8
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 1.4e-82 310.8 309 56.3
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 1.3e-78 297.7 365 46.0
Prupe.8G056800 Prunus persica HOM05D004678 ORTHO05D005880 6.9e-77 292.0 320 55.3
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.6e-73 280.8 254 61.8
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.7e-67 260.8 332 49.4
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 2.2e-67 260.4 255 57.6
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 2.9e-67 260.0 341 48.1
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 4.7e-65 252.7 243 58.8
GSVIVG01025260001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.1e-58 231.5 170 71.2
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 2.7e-57 226.9 151 75.5
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 2.7e-57 226.9 151 75.5
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 1.5e-55 221.1 263 47.9
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.2e-47 194.9 178 60.7
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-46 189.9 121 72.7
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.1e-45 188.3 179 59.8
DCAR_023441 Daucus carota HOM05D004678 ORTHO05D005880 3.1e-45 186.8 155 63.2
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.0e-43 181.8 124 69.4
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 6.6e-35 152.5 136 58.8
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 7.3e-34 149.1 140 57.1
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 7.0e-29 132.5 90 71.1
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.0e-27 128.6 134 54.5
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 2.3e-27 127.5 70 84.3
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 3.9e-27 126.7 117 59.0
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 8.3e-22 109.0 82 67.1
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 7.3e-18 95.9 99 51.5
Psat0s2699g0120 Pisum sativum HOM05D004678 ORTHO05D005880 8.1e-17 92.4 77 63.6
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 3.4e-15 87.0 50 82.0
Cfa024628 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.1e-12 77.8 325 26.5
SHI09055 Sapria himalayana HOM05D004678 ORTHO05D005880 2.1e-12 77.8 53 73.6
COL.COLO4_19765 Corchorus olitorius HOM05D004678 ORTHO05D005880 8.6e-11 72.4 38 76.3
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.1e-10 72.0 87 48.3


User provided reference genes

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