Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 5.1e-146 522.7 827 100.0
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 1.3e-112 411.8 826 93.2
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 1.6e-110 404.8 830 90.6
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 5.1e-69 266.9 827 85.4
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 1.2e-67 262.3 827 84.6
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.0e-65 255.0 827 84.3
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 2.0e-65 255.0 827 85.0
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 1.3e-64 252.3 240 59.2
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 2.3e-61 241.5 173 71.1
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 3.9e-61 240.7 768 88.2
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 6.4e-56 223.4 195 64.1
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 6.2e-51 206.8 206 58.7
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 8.7e-45 186.4 195 55.4
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 5.8e-41 173.7 177 53.1
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 7.6e-41 173.3 213 48.4
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 5.5e-39 167.2 217 47.5
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 9.3e-39 166.4 177 81.9
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 1.5e-36 159.1 176 50.6
CiPaw.09G007900 Carya illinoinensis HOM05D007410 ORTHO05D009500 9.0e-34 149.8 194 49.5
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.2e-32 145.2 222 42.3
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 1.4e-31 142.5 125 60.8
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 7.2e-31 140.2 151 54.3
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 9.4e-31 139.8 184 46.2
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 1.2e-30 139.4 242 37.6
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 3.6e-30 137.9 182 44.0
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 3.6e-30 137.9 178 42.7
DCAR_020784 Daucus carota HOM05D007410 ORTHO05D009500 7.9e-30 136.7 155 43.9
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.3e-29 135.2 173 46.8
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 3.9e-29 134.4 205 43.9
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 5.1e-29 134.0 160 45.0
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 1.1e-28 132.9 226 39.8
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 1.1e-28 132.9 177 66.7
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 2.5e-28 131.7 190 45.8
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 6.3e-27 127.1 141 51.1
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 6.3e-27 127.1 187 43.3
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 1.1e-26 126.3 131 55.0
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 1.1e-26 126.3 175 71.4
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 1.1e-26 126.3 182 43.4
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 1.4e-26 125.9 229 37.1
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 1.8e-26 125.6 185 43.8
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 3.1e-26 124.8 169 40.8
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 3.1e-26 124.8 189 43.9
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 4.1e-26 124.4 157 40.8
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 2.0e-25 122.1 155 49.0
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 2.6e-25 121.7 176 46.0
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 5.9e-25 120.6 162 47.5
BolC9t59308H Brassica oleracea HOM05D007410 ORTHO05D009500 7.7e-25 120.2 187 42.2
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 7.7e-25 120.2 173 44.5
BcaNung06328 Brassica carinata HOM05D007410 ORTHO05D009500 1.7e-24 119.0 222 39.2
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 2.9e-24 118.2 173 43.4
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 3.8e-24 117.9 177 71.2
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 5.0e-24 117.5 155 45.8
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 5.0e-24 117.5 154 48.1
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 1.1e-23 116.3 177 43.5
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 2.5e-23 115.2 134 49.3
Glyma.19G190733 Glycine max HOM05D007410 ORTHO05D009500 2.5e-23 115.2 163 71.2
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 2.5e-23 115.2 181 40.9
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 7.2e-23 113.6 150 41.3
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 9.4e-23 113.2 155 43.9
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 1.2e-22 112.8 171 69.6
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 1.6e-22 112.5 191 40.8
Cc06_g05130 Coffea canephora HOM05D007410 ORTHO05D009500 2.7e-22 111.7 134 49.3
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 4.7e-22 110.9 156 42.3
CARHR201020 Cardamine hirsuta HOM05D007410 ORTHO05D009500 1.4e-21 109.4 165 43.6
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 1.8e-21 109.0 172 68.6
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 3.9e-21 107.8 138 47.8
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 3.9e-21 107.8 172 68.6
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 3.9e-21 107.8 172 68.6
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 1.1e-20 106.3 159 69.2
HanXRQChr17g0535541 Helianthus annuus HOM05D007410 ORTHO05D009500 1.5e-20 105.9 151 39.7
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 3.3e-20 104.8 174 63.2
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 7.4e-20 103.6 159 69.2
Atru.chr12.1036 Acer truncatum HOM05D007410 ORTHO05D009500 9.7e-20 103.2 139 42.4
Atru.chr12.1030 Acer truncatum HOM05D007410 ORTHO05D009500 1.3e-19 102.8 155 45.8
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 2.2e-19 102.1 163 69.9
AUR62004183 Chenopodium quinoa HOM05D007410 ORTHO05D009500 2.8e-19 101.7 185 37.8
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 3.7e-19 101.3 136 44.9
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 3.7e-19 101.3 159 69.2
AL6G44470 Arabidopsis lyrata HOM05D007410 ORTHO05D009500 6.3e-19 100.5 111 46.8
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 4.1e-18 97.8 159 67.9
Lj9E304T4 Lonicera japonica HOM05D007410 ORTHO05D009500 4.1e-18 97.8 182 37.4
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 5.3e-18 97.4 129 48.1
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 7.0e-18 97.1 170 65.3
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 9.1e-18 96.7 72 62.5
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 1.5e-17 95.9 186 34.9
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 7.7e-17 93.6 163 41.7
CDE01G0670 Ceratophyllum demersum HOM05D003192 ORTHO05D003596 1.4e-15 89.4 168 36.3
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 5.5e-15 87.4 159 37.7
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 5.5e-15 87.4 132 40.9
PSO384G3142 Papaver somniferum HOM05D025533 ORTHO05D021545 5.2e-13 80.9 90 43.3
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 1.1e-12 79.7 177 63.8
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 1.5e-12 79.3 172 36.0
Thecc.05G080100 Theobroma cacao HOM05D007410 ORTHO05D009500 9.7e-12 76.6 51 62.7
PSO135G0775 Papaver somniferum HOM05D025533 ORTHO05D021545 2.2e-11 75.5 90 40.0
Actinidia39878 Actinidia chinensis HOM05D007410 ORTHO05D009500 4.1e-10 71.2 61 59.0
Thhalv10015810m.g Eutrema salsugineum HOM05D007410 ORTHO05D009500 4.1e-10 71.2 100 40.0
Migut.G01107 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.7e-08 65.9 121 29.8
Migut.G01143 Erythranthe guttata HOM05D007212 ORTHO05D009094 1.7e-08 65.9 121 29.8
ECA233G1087 Erigeron canadensis HOM05D001398 ORTHO05D001467 8.5e-08 63.5 81 39.5
Migut.A01169 Erythranthe guttata HOM05D007410 ORTHO05D009500 1.5e-07 62.8 168 59.5
Potri.001G236800 Populus trichocarpa HOM05D007212 ORTHO05D009094 1.9e-07 62.4 120 30.8
Zm00001eb167210 Zea mays HOM05D022935 ORTHO05D020958 3.2e-07 61.6 194 30.4
Zm00001eb178770 Zea mays HOM05D022935 ORTHO05D020958 7.2e-07 60.5 194 29.9
Lalb_Chr01g0006871 Lupinus albus HOM05D002453 ORTHO05D008746 9.4e-07 60.1 127 26.0
Nitab4.5_0000316g0260 Nicotiana tabacum HOM05D005973 ORTHO05D007285 2.1e-06 58.9 81 38.3
QL09p040247 Quercus lobata HOM05D005973 ORTHO05D007285 2.1e-06 58.9 102 35.3
Lj3g0002161 Lotus japonicus HOM05D005973 ORTHO05D007285 2.7e-06 58.5 108 32.4
Cpa.g.sc190.19 Carica papaya HOM05D007212 ORTHO05D009094 3.6e-06 58.2 96 33.3
FAN03G3455 Fragaria x ananassa HOM05D007212 ORTHO05D009094 3.6e-06 58.2 116 30.2
Nitab4.5_0001775g0060 Nicotiana tabacum HOM05D005973 ORTHO05D007285 4.7e-06 57.8 81 37.0
ATR0820G257 Amborella trichopoda HOM05D007410 ORTHO05D009500 6.1e-06 57.4 88 38.6
Solyc01g068180.3 Solanum lycopersicum HOM05D005973 ORTHO05D007285 6.1e-06 57.4 81 37.0
Ah.05g174660 Amaranthus hybridus HOM05D007410 ORTHO05D009500 8.0e-06 57.0 163 58.9
HanXRQChr02g0058171 Helianthus annuus HOM05D007410 ORTHO05D009500 8.0e-06 57.0 64 34.4
PGR083G0657 Punica granatum HOM05D007750 ORTHO05D009803 8.0e-06 57.0 152 28.3


User provided reference genes

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