Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1014200 Malus domestica HOM05D006043 ORTHO05D007309 2.8e-82 308.5 155 100.0
MD12G1016000 Malus domestica HOM05D006043 ORTHO05D007309 1.4e-65 253.1 155 80.6
Prupe.7G119300 Prunus persica HOM05D006043 ORTHO05D007309 6.6e-63 244.2 156 79.5
vmacro12136 Vaccinium macrocarpon HOM05D006043 ORTHO05D007309 7.8e-56 220.7 153 70.6
RcHm_v2.0_Chr3g0471911 Rosa chinensis HOM05D006043 ORTHO05D007309 1.0e-55 220.3 146 76.0
Atru.chr8.1654 Acer truncatum HOM05D006043 ORTHO05D007309 1.7e-55 219.5 146 74.7
FAN02G0054 Fragaria x ananassa HOM05D006043 ORTHO05D007309 6.6e-55 217.6 147 76.2
FvH4_6g17700 Fragaria vesca HOM05D006043 ORTHO05D007309 1.1e-54 216.9 147 75.5
Rhsim06G0171100 Rhododendron simsii HOM05D006043 ORTHO05D007309 1.9e-54 216.1 146 70.5
Ciclev10013017m.g Citrus clementina HOM05D006043 ORTHO05D007309 1.4e-52 209.9 157 72.0
Manes.08G019800 Manihot esculenta HOM05D006043 ORTHO05D007309 1.4e-52 209.9 147 75.5
Duzib106G1072 Durio zibethinus HOM05D006043 ORTHO05D007309 3.1e-52 208.8 152 69.1
Potri.013G014300 Populus trichocarpa HOM05D006043 ORTHO05D007309 5.2e-52 208.0 148 71.6
CANSAT80G1206 Cannabis sativa HOM05D006043 ORTHO05D007309 6.8e-52 207.6 146 71.2
COL.COLO4_29832 Corchorus olitorius HOM05D006043 ORTHO05D007309 2.0e-51 206.1 149 69.8
QL07p040748 Quercus lobata HOM05D006043 ORTHO05D007309 1.7e-50 203.0 147 71.4
CiPaw.10G004600 Carya illinoinensis HOM05D006043 ORTHO05D007309 3.8e-50 201.8 148 69.6
CsaV3_3G036730 Cucumis sativus L. HOM05D006043 ORTHO05D007309 4.2e-49 198.4 154 68.2
MELO3C009427.2 Cucumis melo HOM05D006043 ORTHO05D007309 5.4e-49 198.0 154 68.2
Gohir.A04G066428 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.6e-48 196.4 142 68.3
Eucgr.K02399 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.1e-48 196.1 147 66.7
ClCG10G019450 Citrullus lanatus HOM05D006043 ORTHO05D007309 6.0e-48 194.5 154 67.5
Eucgr.K02384 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.0e-47 193.7 147 66.0
Eucgr.K02410 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.7e-47 193.0 147 65.3
Cpa.g.sc5.89 Carica papaya HOM05D006043 ORTHO05D007309 2.3e-47 192.6 146 67.1
Eucgr.K02389 Eucalyptus grandis HOM05D006043 ORTHO05D007309 2.3e-47 192.6 147 65.3
Gohir.D04G105000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 3.9e-47 191.8 142 66.9
Gorai.009G408700 Gossypium raimondii HOM05D006043 ORTHO05D007309 3.9e-47 191.8 142 66.9
Cfa016525 Carpinus fangiana HOM05D006043 ORTHO05D007309 1.1e-46 190.3 148 66.2
Ca_08959_v3 Cicer arietinum L. HOM05D006043 ORTHO05D007309 1.5e-46 189.9 146 65.8
VMungo1383G3657 Vigna mungo HOM05D006043 ORTHO05D007309 1.5e-46 189.9 146 66.4
Haze_19524 Corylus avellana HOM05D006043 ORTHO05D007309 2.5e-46 189.1 147 64.6
Gorai.006G158600 Gossypium raimondii HOM05D006043 ORTHO05D007309 7.3e-46 187.6 143 65.0
Gohir.D09G138000 Gossypium hirsutum HOM05D006043 ORTHO05D007309 1.6e-45 186.4 143 65.0
Duzib093G0521 Durio zibethinus HOM05D006043 ORTHO05D007309 3.6e-45 185.3 150 64.0
Lj1g0027910 Lotus japonicus HOM05D006043 ORTHO05D007309 1.1e-44 183.7 146 65.1
Medtr7g103520 Medicago truncatula HOM05D006043 ORTHO05D007309 1.1e-44 183.7 146 64.4
Eucgr.A01560 Eucalyptus grandis HOM05D006043 ORTHO05D007309 1.4e-44 183.3 117 71.8
Lalb_Chr20g0112261 Lupinus albus HOM05D006043 ORTHO05D007309 1.8e-44 183.0 146 65.1
CSS0040940 Camellia sinensis var. sinensis HOM05D006043 ORTHO05D007309 5.3e-44 181.4 151 63.6
Glyma.03G190100 Glycine max HOM05D006043 ORTHO05D007309 9.0e-44 180.6 146 65.8
Glyma.19G190400 Glycine max HOM05D006043 ORTHO05D007309 5.8e-43 177.9 146 62.3
TWI53G1797 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 7.6e-43 177.6 108 80.6
TPR.G7024 Trifolium pratense HOM05D006043 ORTHO05D007309 9.9e-43 177.2 146 64.4
Phvul.001G185700 Phaseolus vulgaris HOM05D006043 ORTHO05D007309 3.8e-42 175.3 146 63.0
Gohir.A09G136312 Gossypium hirsutum HOM05D006043 ORTHO05D007309 4.9e-42 174.9 153 59.5
Psat3g036320 Pisum sativum HOM05D006043 ORTHO05D007309 8.4e-42 174.1 110 75.5
Nitab4.5_0010125g0030 Nicotiana tabacum HOM05D006043 ORTHO05D007309 5.4e-41 171.4 154 58.4
Dinv21268 Davidia involucrata HOM05D006043 ORTHO05D007309 4.6e-40 168.3 145 62.1
Cc00_g32800 Coffea canephora HOM05D006043 ORTHO05D007309 6.0e-40 167.9 142 64.1
HanXRQChr09g0259401 Helianthus annuus HOM05D006043 ORTHO05D007309 1.3e-39 166.8 143 60.1
Peaxi162Scf00412g00073 Petunia axillaris HOM05D006043 ORTHO05D007309 6.6e-39 164.5 148 60.1
Cc06_g05110 Coffea canephora HOM05D006043 ORTHO05D007309 4.3e-38 161.8 156 56.4
MBI01_g32535_MAGBIO Magnolia biondii HOM05D006043 ORTHO05D007309 5.6e-38 161.4 138 62.3
Sopen09g003740 Solanum pennellii HOM05D006043 ORTHO05D007309 9.6e-38 160.6 148 56.8
Peaxi162Scf00412g00063 Petunia axillaris HOM05D006043 ORTHO05D007309 1.3e-37 160.2 147 59.2
Oeu040545.1 Olea europaea HOM05D006043 ORTHO05D007309 3.6e-37 158.7 145 59.3
Nn6g35076 Nelumbo nucifera HOM05D006043 ORTHO05D007309 6.2e-37 157.9 146 60.3
Solyc09g008980.2 Solanum lycopersicum HOM05D006043 ORTHO05D007309 6.2e-37 157.9 148 55.4
Sp3g08330 Schrenkiella parvula HOM05D006043 ORTHO05D007309 8.1e-37 157.5 143 60.8
Sc07g0005350 Simmondsia chinensis HOM05D006043 ORTHO05D007309 6.9e-36 154.5 145 57.9
Sed0027852 Sechium edule HOM05D006043 ORTHO05D007309 9.0e-36 154.1 147 55.8
AL3G21330 Arabidopsis lyrata HOM05D006043 ORTHO05D007309 2.0e-35 152.9 143 60.8
Oeu030483.1 Olea europaea HOM05D006043 ORTHO05D007309 2.0e-35 152.9 147 59.9
BcaB03g11578 Brassica carinata HOM05D006043 ORTHO05D007309 2.6e-35 152.5 143 60.8
C03p43400 Brassica napus HOM05D006043 ORTHO05D007309 2.6e-35 152.5 151 58.9
Thecc.05G079900 Theobroma cacao HOM05D006043 ORTHO05D007309 5.8e-35 151.4 150 56.7
Cc00_g05260 Coffea canephora HOM05D006043 ORTHO05D007309 1.3e-34 150.2 142 59.9
PSO384G2483 Papaver somniferum HOM05D006043 ORTHO05D007309 1.7e-34 149.8 144 56.2
Aqoxy1G00961 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 2.2e-34 149.4 150 53.3
A03p35730 Brassica napus HOM05D006043 ORTHO05D007309 2.2e-34 149.4 143 60.1
Nn2g13971 Nelumbo nucifera HOM05D006043 ORTHO05D007309 2.9e-34 149.1 118 60.2
Thhalv10021699m.g Eutrema salsugineum HOM05D006043 ORTHO05D007309 3.8e-34 148.7 143 57.3
PGR004G1627 Punica granatum HOM05D006043 ORTHO05D007309 4.9e-34 148.3 137 59.1
Prupe.7G091800 Prunus persica HOM05D006043 ORTHO05D007309 6.4e-34 147.9 98 76.5
BcaC01g04256 Brassica carinata HOM05D006043 ORTHO05D007309 8.4e-34 147.5 151 57.6
BraA05t22694Z Brassica rapa HOM05D006043 ORTHO05D007309 1.1e-33 147.1 143 59.4
DCAR_009167 Daucus carota HOM05D006043 ORTHO05D007309 1.4e-33 146.7 143 56.6
A05p39030 Brassica napus HOM05D006043 ORTHO05D007309 1.9e-33 146.4 143 57.3
C05p58050 Brassica napus HOM05D002004 ORTHO05D002089 1.9e-33 146.4 151 57.6
BolC5t34462H Brassica oleracea HOM05D006043 ORTHO05D007309 1.9e-33 146.4 151 57.6
BraA03t12747Z Brassica rapa HOM05D006043 ORTHO05D007309 1.9e-33 146.4 151 57.6
CARHR084520 Cardamine hirsuta HOM05D006043 ORTHO05D007309 2.4e-33 146.0 143 55.9
EL10Ac7g17005 Beta vulgaris HOM05D006043 ORTHO05D007309 3.2e-33 145.6 144 52.1
Carub.0003s0912 Capsella rubella HOM05D006043 ORTHO05D007309 5.4e-33 144.8 149 55.0
AT3G10020 Arabidopsis thaliana HOM05D006043 ORTHO05D007309 1.6e-32 143.3 143 55.2
TWI13G0012 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.7e-32 142.5 147 56.5
TWI74G0769 Tripterygium wilfordii HOM05D006043 ORTHO05D007309 2.7e-32 142.5 147 56.5
BcaC05g29726 Brassica carinata HOM05D006043 ORTHO05D007309 4.6e-32 141.7 146 56.8
PGSC0003DMG400002724 Solanum tuberosum HOM05D006043 ORTHO05D007309 4.6e-32 141.7 149 55.0
Aa31LG3G2550 Aethionema arabicum HOM05D006043 ORTHO05D007309 1.3e-31 140.2 143 55.2
Nitab4.5_0010125g0040 Nicotiana tabacum HOM05D006043 ORTHO05D007309 6.7e-31 137.9 119 58.8
PGSC0003DMG400002723 Solanum tuberosum HOM05D006043 ORTHO05D007309 8.7e-31 137.5 148 52.0
Zm00001eb406490 Zea mays HOM05D006043 ORTHO05D007309 1.1e-30 137.1 137 57.7
BolC3t16611H Brassica oleracea HOM05D006043 ORTHO05D007309 3.3e-30 135.6 151 53.0
Ah.08g211020 Amaranthus hybridus HOM05D006043 ORTHO05D007309 9.6e-30 134.0 144 50.0
SGA_v2.0_scaffold40G15419 Striga asiatica HOM05D006043 ORTHO05D007309 9.6e-30 134.0 143 55.9
Nitab4.5_0001922g0090 Nicotiana tabacum HOM05D006043 ORTHO05D007309 1.3e-29 133.7 118 55.1
Lj2P127T74 Lonicera japonica HOM05D006043 ORTHO05D007309 1.6e-29 133.3 136 55.1
Lsat_1_v5_gn_2_22321 Lactuca sativa HOM05D006043 ORTHO05D007309 4.8e-29 131.7 136 54.4
CAN.G824.34 Capsicum annuum HOM05D006043 ORTHO05D007309 6.2e-29 131.3 150 53.3
BolC8t51238H Brassica oleracea HOM05D006043 ORTHO05D007309 8.1e-29 131.0 128 60.9
Aqoxy2G01470 Aquilegia oxysepala HOM05D006043 ORTHO05D007309 5.3e-28 128.3 132 53.0
THA.LOC104816380 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 1.2e-27 127.1 117 53.0
Os12g0147200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.5e-27 126.7 141 51.1
ECA126G0006 Erigeron canadensis HOM05D006043 ORTHO05D007309 3.4e-27 125.6 104 58.7
SalBow3G1044 Salvia bowleyana HOM05D006043 ORTHO05D007309 3.4e-27 125.6 147 51.7
Lj4P368T6 Lonicera japonica HOM05D006043 ORTHO05D007309 2.2e-26 122.9 87 71.3
HPP92_021571 Vanilla planifolia HOM05D006043 ORTHO05D007309 2.2e-26 122.9 131 48.1
Os11g0149200 Oryza sativa ssp. japonica HOM05D006043 ORTHO05D007309 1.1e-25 120.6 149 48.3
Solyc09g008970.1 Solanum lycopersicum HOM05D006043 ORTHO05D007309 5.5e-25 118.2 144 52.1
TAR334G0001 Trochodendron aralioides HOM05D006043 ORTHO05D007309 5.5e-25 118.2 79 73.4
TAR369G1076 Trochodendron aralioides HOM05D006043 ORTHO05D007309 5.5e-25 118.2 79 73.4
Sopen09g003730 Solanum pennellii HOM05D006043 ORTHO05D007309 7.9e-24 114.4 150 52.0
C08p36560 Brassica napus HOM05D006043 ORTHO05D007309 2.0e-19 99.8 100 60.0
BcaC03g16179 Brassica carinata HOM05D006043 ORTHO05D007309 1.4e-17 93.6 100 58.0
C02p39530 Brassica napus HOM05D006043 ORTHO05D007309 4.2e-17 92.0 100 57.0
BolC2t09966H Brassica oleracea HOM05D006043 ORTHO05D007309 4.2e-17 92.0 100 57.0
AUR62033593 Chenopodium quinoa HOM05D006043 ORTHO05D007309 4.6e-16 88.6 129 44.2
SEGI_20897 Sequoiadendron giganteum HOM05D006043 ORTHO05D007309 1.3e-15 87.0 110 47.3
THA.LOC104823222 Tarenaya hassleriana HOM05D006043 ORTHO05D007309 3.0e-15 85.9 70 55.7
Nn1g08859 Nelumbo nucifera HOM05D006043 ORTHO05D007309 4.3e-14 82.0 64 65.6
SMO347G0034 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 1.5e-11 73.6 146 35.6
AUR62037886 Chenopodium quinoa HOM05D006043 ORTHO05D007309 4.2e-09 65.5 96 42.7
SMO358G0245 Selaginella moellendorffii HOM05D006043 ORTHO05D007309 8.8e-07 57.8 92 43.5
Mapoly0058s0037 Marchantia polymorpha HOM05D006043 ORTHO05D007309 4.3e-06 55.5 103 40.8
Pp3c23_8320 Physcomitrium patens HOM05D053615 ORTHO05D007309 4.3e-06 55.5 107 40.2


User provided reference genes

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