Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1005200 Malus domestica HOM05D022870 ORTHO05D000666 8.8e-162 573.5 287 100.0
MD14G1005100 Malus domestica HOM05D000881 ORTHO05D000666 1.0e-48 198.0 101 92.1
MD09G1039600 Malus domestica HOM05D000005 ORTHO05D000012 1.0e-45 188.0 175 57.7
Prupe.7G008400 Prunus persica HOM05D000881 ORTHO05D000666 2.6e-36 156.8 102 69.6
RcHm_v2.0_Chr3g0496541 Rosa chinensis HOM05D000881 ORTHO05D000666 2.5e-31 140.2 104 65.4
MD09G1178300 Malus domestica HOM05D000005 ORTHO05D245554 8.8e-29 131.7 174 43.1
TWI34G1202 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 3.6e-14 83.2 91 42.9
FvH4_7g05240 Fragaria vesca HOM05D000881 ORTHO05D000666 2.3e-13 80.5 90 43.3
FAN06G2536 Fragaria x ananassa HOM05D000881 ORTHO05D000666 2.3e-13 80.5 90 43.3
MBI11_g45239_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 5.2e-13 79.3 94 43.6
MD07G1061000 Malus domestica HOM05D000881 ORTHO05D000666 8.9e-13 78.6 90 43.3
PGSC0003DMG400008713 Solanum tuberosum HOM05D000881 ORTHO05D000666 8.9e-13 78.6 90 44.4
Dinv11927 Davidia involucrata HOM05D000881 ORTHO05D000666 1.2e-12 78.2 94 38.3
Sopen01g004670 Solanum pennellii HOM05D000881 ORTHO05D000666 1.2e-12 78.2 89 46.1
FAN03G3143 Fragaria x ananassa HOM05D000881 ORTHO05D000666 2.0e-12 77.4 90 42.2
PSO384G3004 Papaver somniferum HOM05D000881 ORTHO05D000666 3.4e-12 76.6 96 38.5
QL10p034472 Quercus lobata HOM05D000881 ORTHO05D000666 3.4e-12 76.6 90 42.2
TWI60G0863 Tripterygium wilfordii HOM05D000881 ORTHO05D000666 3.4e-12 76.6 90 41.1
PSO339G4238 Papaver somniferum HOM05D000881 ORTHO05D000666 5.8e-12 75.9 96 38.5
Potri.013G054900 Populus trichocarpa HOM05D000881 ORTHO05D000666 5.8e-12 75.9 95 40.0
RcHm_v2.0_Chr1g0331581 Rosa chinensis HOM05D000881 ORTHO05D000666 5.8e-12 75.9 90 42.2
arahy.Tifrunner.gnm1.ann1.J1HUHD Arachis hypogaea HOM05D000881 ORTHO05D000666 7.5e-12 75.5 96 40.6
Nitab4.5_0007747g0030 Nicotiana tabacum HOM05D000881 ORTHO05D000666 1.3e-11 74.7 89 44.9
arahy.Tifrunner.gnm1.ann1.Y8A2Y7 Arachis hypogaea HOM05D000881 ORTHO05D000666 1.7e-11 74.3 93 40.9
Phvul.004G140900 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 1.7e-11 74.3 92 44.6
PGR042G3352 Punica granatum HOM05D000881 ORTHO05D000666 1.7e-11 74.3 93 36.6
QL11p032427 Quercus lobata HOM05D000881 ORTHO05D000666 1.7e-11 74.3 92 43.5
TAR623G1394 Trochodendron aralioides HOM05D000881 ORTHO05D000666 3.7e-11 73.2 90 38.9
CAN.G794.11 Capsicum annuum HOM05D000881 ORTHO05D000666 4.9e-11 72.8 89 42.7
Manes.09G138800 Manihot esculenta HOM05D000881 ORTHO05D000666 4.9e-11 72.8 90 40.0
Duzib106G1449 Durio zibethinus HOM05D000881 ORTHO05D000666 8.3e-11 72.0 91 39.6
Psat1g121560 Pisum sativum HOM05D000881 ORTHO05D000666 8.3e-11 72.0 95 42.1
PGSC0003DMG400008714 Solanum tuberosum HOM05D000881 ORTHO05D000666 8.3e-11 72.0 90 41.1
Ah.08g222550 Amaranthus hybridus HOM05D000881 ORTHO05D000666 1.1e-10 71.6 90 40.0
Peaxi162Scf00345g00410 Petunia axillaris HOM05D000881 ORTHO05D000666 1.1e-10 71.6 89 40.4
Hund18820 Selenicereus undatus HOM05D000881 ORTHO05D000666 1.4e-10 71.2 94 38.3
Hund20971 Selenicereus undatus HOM05D000881 ORTHO05D000666 1.4e-10 71.2 89 38.2
Nn2g15728 Nelumbo nucifera HOM05D000881 ORTHO05D000666 1.9e-10 70.9 89 44.9
PSO017G5801 Papaver somniferum HOM05D000881 ORTHO05D000666 1.9e-10 70.9 90 40.0
Peaxi162Scf01021g00028 Petunia axillaris HOM05D000881 ORTHO05D000666 1.9e-10 70.9 89 40.4
CiPaw.14G037000 Carya illinoinensis HOM05D000881 ORTHO05D000666 2.4e-10 70.5 90 37.8
MD07G1061100 Malus domestica HOM05D000881 ORTHO05D000666 3.2e-10 70.1 95 36.8
Nitab4.5_0000157g0240 Nicotiana tabacum HOM05D000881 ORTHO05D000666 3.2e-10 70.1 89 41.6
Rhsim03G0053400 Rhododendron simsii HOM05D000881 ORTHO05D000666 3.2e-10 70.1 92 39.1
VMungo0331G1612 Vigna mungo HOM05D008573 ORTHO05D009911 3.2e-10 70.1 131 33.6
Nitab4.5_0000157g0350 Nicotiana tabacum HOM05D000881 ORTHO05D000666 4.1e-10 69.7 89 41.6
SGA_v2.0_scaffold392G50662 Striga asiatica HOM05D000881 ORTHO05D000666 4.1e-10 69.7 92 38.0
MBI11_g07704_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 5.4e-10 69.3 90 41.1
MD02G1064700 Malus domestica HOM05D022870 ORTHO05D025498 7.0e-10 68.9 184 27.2
PSO339G2895 Papaver somniferum HOM05D000881 ORTHO05D000666 7.0e-10 68.9 90 41.1
Prupe.2G065600 Prunus persica HOM05D000881 ORTHO05D000666 7.0e-10 68.9 89 36.0
CANSAT64G1865 Cannabis sativa HOM05D000881 ORTHO05D000666 9.2e-10 68.6 98 40.8
AUR62020188 Chenopodium quinoa HOM05D000881 ORTHO05D000666 9.2e-10 68.6 89 41.6
Potri.019G037700 Populus trichocarpa HOM05D000881 ORTHO05D000666 9.2e-10 68.6 100 33.0
Sopen01g004680 Solanum pennellii HOM05D000881 ORTHO05D000666 9.2e-10 68.6 90 41.1
Actinidia03944 Actinidia chinensis HOM05D000881 ORTHO05D000666 1.2e-09 68.2 93 39.8
Duzib177G0536 Durio zibethinus HOM05D000881 ORTHO05D000666 1.6e-09 67.8 92 39.1
MBI11_g17410_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 1.6e-09 67.8 101 37.6
Psat3g087960 Pisum sativum HOM05D000881 ORTHO05D000666 1.6e-09 67.8 91 36.3
Sabra19G0049000 Salix brachista HOM05D000881 ORTHO05D000666 1.6e-09 67.8 94 38.3
Sp4g09910 Schrenkiella parvula HOM05D000881 ORTHO05D000666 1.6e-09 67.8 102 32.4
Hma1.2p1_0218F.1_g092400 Hydrangea macrophylla HOM05D000881 ORTHO05D000666 2.0e-09 67.4 96 38.5
Lalb_Chr14g0370271 Lupinus albus HOM05D000881 ORTHO05D000666 2.0e-09 67.4 91 38.5
MD11G1178700 Malus domestica HOM05D000881 ORTHO05D000666 2.0e-09 67.4 95 36.8
PSO063G0751 Papaver somniferum HOM05D000881 ORTHO05D000666 2.0e-09 67.4 91 39.6
Thecc.05G246400 Theobroma cacao HOM05D000881 ORTHO05D000666 2.0e-09 67.4 94 34.0
Cfa017687 Carpinus fangiana HOM05D000881 ORTHO05D000666 2.7e-09 67.0 85 35.3
Duzib106G1189 Durio zibethinus HOM05D000881 ORTHO05D000666 2.7e-09 67.0 91 37.4
Phvul.001G113500 Phaseolus vulgaris HOM05D000881 ORTHO05D000666 3.5e-09 66.6 94 35.1
vmacro07553 Vaccinium macrocarpon HOM05D000881 ORTHO05D000666 3.5e-09 66.6 91 39.6
BcaC06g32196 Brassica carinata HOM05D000881 ORTHO05D000666 4.6e-09 66.2 92 37.0
AUR62001592 Chenopodium quinoa HOM05D000881 ORTHO05D000666 4.6e-09 66.2 89 40.4
MBI11_g07703_MAGBIO Magnolia biondii HOM05D000881 ORTHO05D000666 4.6e-09 66.2 92 37.0
Sabra13G0049100 Salix brachista HOM05D000881 ORTHO05D000666 4.6e-09 66.2 101 37.6
Sabra13G0049200 Salix brachista HOM05D000881 ORTHO05D000666 4.6e-09 66.2 101 37.6
Sabra13G0049300 Salix brachista HOM05D000881 ORTHO05D000666 4.6e-09 66.2 101 37.6
Sabra13G0049400 Salix brachista HOM05D000881 ORTHO05D000666 4.6e-09 66.2 95 37.9
AL6G14570 Arabidopsis lyrata HOM05D000881 ORTHO05D000666 6.0e-09 65.9 105 38.1
DCAR_009079 Daucus carota HOM05D000881 ORTHO05D000666 6.0e-09 65.9 93 38.7
Sc21g0006620 Simmondsia chinensis HOM05D000881 ORTHO05D000666 6.0e-09 65.9 89 37.1
Actinidia03943 Actinidia chinensis HOM05D000881 ORTHO05D000666 7.8e-09 65.5 92 39.1
CDE07G1560 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 7.8e-09 65.5 99 39.4
Dinv25100 Davidia involucrata HOM05D000881 ORTHO05D000666 1.3e-08 64.7 94 37.2
Prupe.6G151500 Prunus persica HOM05D000881 ORTHO05D000666 1.3e-08 64.7 89 32.6
Rhsim03G0053700 Rhododendron simsii HOM05D000881 ORTHO05D000666 1.3e-08 64.7 98 35.7
Actinidia37794 Actinidia chinensis HOM05D000881 ORTHO05D000666 1.7e-08 64.3 93 38.7
AT5G04890 Arabidopsis thaliana HOM05D000881 ORTHO05D000666 1.7e-08 64.3 105 36.2
Cpa.g.sc54.45 Carica papaya HOM05D000881 ORTHO05D000666 2.3e-08 63.9 92 37.0
PSO339G0007 Papaver somniferum HOM05D000881 ORTHO05D000666 2.3e-08 63.9 90 37.8
PSO384G0812 Papaver somniferum HOM05D000881 ORTHO05D000666 2.3e-08 63.9 90 37.8
CiPaw.14G092300 Carya illinoinensis HOM05D000881 ORTHO05D000666 3.0e-08 63.5 89 36.0
Migut.L01864 Erythranthe guttata HOM05D000881 ORTHO05D000666 3.0e-08 63.5 89 38.2
Lj1g0015574 Lotus japonicus HOM05D000881 ORTHO05D000666 3.0e-08 63.5 91 34.1
Nitab4.5_0001611g0050 Nicotiana tabacum HOM05D000881 ORTHO05D000666 3.0e-08 63.5 88 36.4
Rhsim03G0053300 Rhododendron simsii HOM05D000881 ORTHO05D000666 3.0e-08 63.5 98 35.7
A10p31250 Brassica napus HOM05D000881 ORTHO05D000666 3.9e-08 63.2 92 34.8
Actinidia21135 Actinidia chinensis HOM05D001769 ORTHO05D001695 5.0e-08 62.8 92 37.0
C09p71870 Brassica napus HOM05D000881 ORTHO05D000666 5.0e-08 62.8 92 34.8
Duzib177G0879 Durio zibethinus HOM05D000881 ORTHO05D000666 5.0e-08 62.8 112 36.6
Gohir.D13G102400 Gossypium hirsutum HOM05D019023 ORTHO05D022425 5.0e-08 62.8 93 32.3
MD02G1259500 Malus domestica HOM05D000881 ORTHO05D000666 5.0e-08 62.8 90 33.3
Nitab4.5_0004014g0050 Nicotiana tabacum HOM05D000881 ORTHO05D000666 5.0e-08 62.8 88 35.2
BcaB01g05921 Brassica carinata HOM05D000881 ORTHO05D000666 6.6e-08 62.4 96 34.4
A03p01910 Brassica napus HOM05D000881 ORTHO05D000666 6.6e-08 62.4 96 34.4
C03p02280 Brassica napus HOM05D000881 ORTHO05D000666 6.6e-08 62.4 96 34.4
BraA03t09561Z Brassica rapa HOM05D000881 ORTHO05D000666 6.6e-08 62.4 96 34.4
QL04p049792 Quercus lobata HOM05D000881 ORTHO05D000666 6.6e-08 62.4 90 32.2
CDE05G3520 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 8.6e-08 62.0 90 40.0
Cc06_g07270 Coffea canephora HOM05D000881 ORTHO05D000666 8.6e-08 62.0 90 36.7
Glyma.16G038600 Glycine max HOM05D000881 ORTHO05D000666 8.6e-08 62.0 91 33.0
Gorai.013G114700 Gossypium raimondii HOM05D019023 ORTHO05D022425 8.6e-08 62.0 88 33.0
PSO384G0102 Papaver somniferum HOM05D000881 ORTHO05D000666 8.6e-08 62.0 90 34.4
MSTRG.10426 Avicennia marina HOM05D000881 ORTHO05D000666 1.1e-07 61.6 89 38.2
CDE04G2129 Ceratophyllum demersum HOM05D000881 ORTHO05D000666 1.1e-07 61.6 99 36.4
Glyma.19G114200 Glycine max HOM05D000881 ORTHO05D000666 1.1e-07 61.6 91 33.0
Medtr7g086130 Medicago truncatula HOM05D000881 ORTHO05D000666 1.1e-07 61.6 96 35.4
BcaNung05155 Brassica carinata HOM05D000881 ORTHO05D000666 1.5e-07 61.2 96 33.3
CANSAT56G0189 Cannabis sativa HOM05D000881 ORTHO05D000666 1.5e-07 61.2 89 40.4
Oeu027605.1 Olea europaea HOM05D000881 ORTHO05D000666 1.5e-07 61.2 90 34.4
Sed0019450 Sechium edule HOM05D000881 ORTHO05D000666 1.5e-07 61.2 92 33.7
Gohir.A08G219200 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.9e-07 60.8 95 34.7
Gohir.A13G164900 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.9e-07 60.8 93 35.5
PSO339G0791 Papaver somniferum HOM05D000881 ORTHO05D000666 1.9e-07 60.8 90 33.3
Prupe.7G008300 Prunus persica HOM05D000881 ORTHO05D000666 1.9e-07 60.8 93 36.6
Sopen01g040670 Solanum pennellii HOM05D000881 ORTHO05D000666 1.9e-07 60.8 88 34.1
CDE10G0549 Ceratophyllum demersum HOM05D000881 ORTHO05D010205 2.5e-07 60.5 90 34.4
Thhalv10014066m.g Eutrema salsugineum HOM05D000881 ORTHO05D000666 2.5e-07 60.5 92 34.8
MD02G1064500 Malus domestica HOM05D022870 ORTHO05D247952 2.5e-07 60.5 187 26.2
Eucgr.G02656 Eucalyptus grandis HOM05D000881 ORTHO05D000666 3.3e-07 60.1 92 32.6
Nitab4.5_0018311g0010 Nicotiana tabacum HOM05D000881 ORTHO05D000666 3.3e-07 60.1 89 38.2
Oeu044647.1 Olea europaea HOM05D000881 ORTHO05D000666 3.3e-07 60.1 93 35.5
Solyc01g096960.3 Solanum lycopersicum HOM05D000881 ORTHO05D000666 3.3e-07 60.1 88 34.1
PGSC0003DMG400027498 Solanum tuberosum HOM05D000881 ORTHO05D000666 3.3e-07 60.1 88 34.1
Ah.08g222530 Amaranthus hybridus HOM05D000881 ORTHO05D000666 4.3e-07 59.7 95 34.7
BolC9t59936H Brassica oleracea HOM05D000881 ORTHO05D000666 4.3e-07 59.7 92 33.7
Lalb_Chr14g0364621 Lupinus albus HOM05D000881 ORTHO05D000666 4.3e-07 59.7 97 33.0
MD12G1007600 Malus domestica HOM05D000881 ORTHO05D000666 4.3e-07 59.7 94 34.0
Gohir.D08G236060 Gossypium hirsutum HOM05D000881 ORTHO05D000666 5.6e-07 59.3 95 35.8
Gorai.004G251100 Gossypium raimondii HOM05D000881 ORTHO05D000666 5.6e-07 59.3 95 35.8
RcHm_v2.0_Chr3g0496561 Rosa chinensis HOM05D000881 ORTHO05D000666 5.6e-07 59.3 98 33.7
ClCG04G012640 Citrullus lanatus HOM05D000881 ORTHO05D000666 7.3e-07 58.9 108 32.4
Gohir.A13G097700 Gossypium hirsutum HOM05D019023 ORTHO05D022425 7.3e-07 58.9 87 33.3
Gohir.D13G167700 Gossypium hirsutum HOM05D000881 ORTHO05D000666 7.3e-07 58.9 93 34.4
Gorai.013G194400 Gossypium raimondii HOM05D000881 ORTHO05D000666 7.3e-07 58.9 93 34.4
Ciclev10018348m.g Citrus clementina HOM05D000881 ORTHO05D000666 9.5e-07 58.5 95 33.7
Dinv32138 Davidia involucrata HOM05D000881 ORTHO05D000666 9.5e-07 58.5 91 37.4
Peaxi162Scf00647g00136 Petunia axillaris HOM05D000881 ORTHO05D000666 9.5e-07 58.5 90 35.6
Rhsim03G0053200 Rhododendron simsii HOM05D000881 ORTHO05D000666 9.5e-07 58.5 92 35.9
Hund06059 Selenicereus undatus HOM05D000881 ORTHO05D000666 9.5e-07 58.5 94 34.0
COL.COLO4_32969 Corchorus olitorius HOM05D000881 ORTHO05D000666 1.2e-06 58.2 92 34.8
Gohir.A05G076300 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.2e-06 58.2 91 31.9
Gohir.A08G219300 Gossypium hirsutum HOM05D000881 ORTHO05D000666 1.2e-06 58.2 94 35.1
CSS0013808 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 1.6e-06 57.8 93 36.6
CARHR208380 Cardamine hirsuta HOM05D000881 ORTHO05D000080 1.6e-06 57.8 92 33.7
Rhsim03G0053800 Rhododendron simsii HOM05D000881 ORTHO05D000666 1.6e-06 57.8 107 29.9
THA.LOC104810968 Tarenaya hassleriana HOM05D000881 ORTHO05D000666 1.6e-06 57.8 89 34.8
CSS0028596 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 2.1e-06 57.4 93 36.6
CAN.G794.10 Capsicum annuum HOM05D000881 ORTHO05D000666 2.1e-06 57.4 73 39.7
AUR62014290 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.1e-06 57.4 90 33.3
AUR62036271 Chenopodium quinoa HOM05D000881 ORTHO05D000666 2.1e-06 57.4 95 33.7
Duzib132G0066 Durio zibethinus HOM05D000881 ORTHO05D000666 2.1e-06 57.4 92 35.9
Migut.N01922 Erythranthe guttata HOM05D000881 ORTHO05D000666 2.8e-06 57.0 89 33.7
SGA_v2.0_scaffold196G40977 Striga asiatica HOM05D000881 ORTHO05D000666 2.8e-06 57.0 91 35.2
Nn3g21696 Nelumbo nucifera HOM05D000881 ORTHO05D000666 3.6e-06 56.6 91 33.0
SalBow4G2822 Salvia bowleyana HOM05D000881 ORTHO05D000666 3.6e-06 56.6 92 30.4
AUR62039721 Chenopodium quinoa HOM05D000881 ORTHO05D000666 4.7e-06 56.2 95 33.7
Gohir.A03G163700 Gossypium hirsutum HOM05D010059 ORTHO05D000666 4.7e-06 56.2 92 37.0
Gohir.D02G187100 Gossypium hirsutum HOM05D010059 ORTHO05D000666 4.7e-06 56.2 92 37.0
Gorai.005G209500 Gossypium raimondii HOM05D010059 ORTHO05D000666 4.7e-06 56.2 92 37.0
MD14G1004900 Malus domestica HOM05D000881 ORTHO05D000666 4.7e-06 56.2 92 31.5
Sp6g37930 Schrenkiella parvula HOM05D000881 ORTHO05D000666 4.7e-06 56.2 92 34.8
Atru.chr2.1411 Acer truncatum HOM05D000881 ORTHO05D000666 6.2e-06 55.8 90 34.4
CSS0021436 Camellia sinensis var. sinensis HOM05D000881 ORTHO05D000666 6.2e-06 55.8 94 36.2
HanXRQChr01g0026391 Helianthus annuus HOM05D000881 ORTHO05D000666 6.2e-06 55.8 114 31.6
HanXRQChr11g0347921 Helianthus annuus HOM05D000881 ORTHO05D000666 6.2e-06 55.8 91 34.1
Sopen01g004690 Solanum pennellii HOM05D000881 ORTHO05D000666 6.2e-06 55.8 89 36.0
Thecc.09G265800 Theobroma cacao HOM05D000881 ORTHO05D000666 6.2e-06 55.8 89 31.5
GSVIVG01037509001 Vitis vinifera HOM05D000881 ORTHO05D000666 6.2e-06 55.8 89 30.3
Ciclev10016030m.g Citrus clementina HOM05D000881 ORTHO05D000666 8.0e-06 55.5 92 29.3
FAN03G2527 Fragaria x ananassa HOM05D000881 ORTHO05D000666 8.0e-06 55.5 99 31.3


User provided reference genes

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