Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1003600 Malus domestica HOM05D003715 ORTHO05D003958 6.1e-158 560.8 298 100.0
MD12G1005100 Malus domestica HOM05D003715 ORTHO05D003958 1.2e-124 450.3 300 83.3
Prupe.7G006100 Prunus persica HOM05D003715 ORTHO05D003958 7.1e-90 334.7 318 60.7
RcHm_v2.0_Chr3g0497011 Rosa chinensis HOM05D003715 ORTHO05D003958 5.7e-63 245.4 333 50.8
Cfa001533 Carpinus fangiana HOM05D003715 ORTHO05D003958 5.2e-56 222.2 322 49.4
FvH4_1g28230 Fragaria vesca HOM05D003715 ORTHO05D003958 6.7e-56 221.9 314 48.1
QL07p018445 Quercus lobata HOM05D003715 ORTHO05D003958 6.7e-56 221.9 326 48.8
Sabra19G0044200 Salix brachista HOM05D003715 ORTHO05D003958 9.7e-55 218.0 331 45.6
Sabra19G0047500 Salix brachista HOM05D003715 ORTHO05D003958 9.7e-55 218.0 331 45.6
FAN23G0877 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.3e-54 217.6 314 48.1
Haze_19430 Corylus avellana HOM05D003715 ORTHO05D003958 2.2e-54 216.9 322 47.5
FAN26G1768 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.4e-53 213.4 315 47.3
FAN28G3019 Fragaria x ananassa HOM05D003715 ORTHO05D003958 7.0e-53 211.8 315 46.7
Potri.019G035600 Populus trichocarpa HOM05D003715 ORTHO05D003958 2.9e-51 206.5 333 43.5
Manes.09G140500 Manihot esculenta HOM05D003715 ORTHO05D003958 5.0e-51 205.7 318 44.3
Atru.chr2.1400 Acer truncatum HOM05D003715 ORTHO05D003958 1.5e-50 204.1 321 44.5
Manes.08G145000 Manihot esculenta HOM05D003715 ORTHO05D003958 2.5e-50 203.4 320 42.8
Ciclev10021362m.g Citrus clementina HOM05D003715 ORTHO05D003958 2.7e-49 199.9 318 45.0
Potri.013G057200 Populus trichocarpa HOM05D003715 ORTHO05D003958 6.1e-49 198.7 332 43.7
CiPaw.10G001300 Carya illinoinensis HOM05D003715 ORTHO05D003958 4.0e-48 196.1 332 44.6
Actinidia22080 Actinidia chinensis HOM05D003715 ORTHO05D003958 3.4e-47 193.0 330 43.9
Sabra13G0051000 Salix brachista HOM05D003715 ORTHO05D003958 1.7e-46 190.7 333 42.3
Hma1.2p1_0152F.1_g067600 Hydrangea macrophylla HOM05D003715 ORTHO05D003958 2.4e-45 186.8 302 44.0
Eucgr.A02102 Eucalyptus grandis HOM05D003715 ORTHO05D003958 1.6e-44 184.1 311 42.8
FAN19G0160 Fragaria x ananassa HOM05D003715 ORTHO05D003958 2.2e-43 180.3 289 45.3
PGR042G0616 Punica granatum HOM05D003715 ORTHO05D003958 1.2e-41 174.5 305 43.0
TWI34G1349 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.2e-41 174.5 326 38.7
vmacro12564 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 2.1e-41 173.7 309 41.1
Glyma.16G153700 Glycine max HOM05D003715 ORTHO05D003958 6.1e-41 172.2 314 39.2
TPR.G5870 Trifolium pratense HOM05D003715 ORTHO05D003958 6.1e-41 172.2 305 40.7
Dinv14575 Davidia involucrata HOM05D003715 ORTHO05D003958 8.0e-41 171.8 311 41.5
Sed0002226 Sechium edule HOM05D003715 ORTHO05D003958 8.0e-41 171.8 319 42.0
Phvul.004G080700 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.0e-40 171.4 314 38.2
TAR623G0055 Trochodendron aralioides HOM05D003715 ORTHO05D003958 2.3e-40 170.2 314 38.9
Glyma.02G072500 Glycine max HOM05D003715 ORTHO05D003958 5.2e-40 169.1 316 39.6
VMungo0464G1653 Vigna mungo HOM05D003715 ORTHO05D003958 1.2e-39 167.9 314 38.2
Dinv37021 Davidia involucrata HOM05D003715 ORTHO05D003958 3.4e-39 166.4 308 44.5
CANSAT78G1806 Cannabis sativa HOM05D003715 ORTHO05D003958 9.8e-39 164.9 326 39.6
Ca_08274_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 9.8e-39 164.9 299 39.8
MELO3C008806.2 Cucumis melo HOM05D003715 ORTHO05D003958 1.3e-38 164.5 310 42.6
Lalb_Chr02g0157161 Lupinus albus HOM05D003715 ORTHO05D003958 1.7e-38 164.1 299 39.5
Solyc10g078590.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 1.7e-38 164.1 300 41.0
CsaV3_4G013240 Cucumis sativus L. HOM05D003715 ORTHO05D003958 2.2e-38 163.7 309 41.7
Nn2g12054 Nelumbo nucifera HOM05D003715 ORTHO05D003958 2.2e-38 163.7 301 39.5
Nitab4.5_0002769g0040 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.8e-38 163.3 310 41.3
PGSC0003DMG400008354 Solanum tuberosum HOM05D003715 ORTHO05D003958 2.8e-38 163.3 300 41.0
Sopen10g029220 Solanum pennellii HOM05D003715 ORTHO05D003958 4.9e-38 162.5 300 40.7
MBI01_g25640_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 1.2e-36 157.9 327 39.1
TWI32G0411 Tripterygium wilfordii HOM05D003715 ORTHO05D003958 1.2e-36 157.9 317 38.5
MSTRG.26069 Avicennia marina HOM05D003715 ORTHO05D003958 3.5e-36 156.4 301 38.5
ClCG04G005350 Citrullus lanatus HOM05D003715 ORTHO05D003958 1.7e-35 154.1 323 39.3
PSO339G5928 Papaver somniferum HOM05D003715 ORTHO05D003958 1.7e-35 154.1 316 39.2
Medtr7g085790 Medicago truncatula HOM05D003715 ORTHO05D003958 2.3e-35 153.7 299 39.8
Psat3g088760 Pisum sativum HOM05D003715 ORTHO05D003958 3.8e-35 152.9 295 40.3
CiPaw.09G002400 Carya illinoinensis HOM05D003715 ORTHO05D003958 1.1e-34 151.4 287 42.2
Lj1g0002462 Lotus japonicus HOM05D003715 ORTHO05D003958 1.1e-34 151.4 300 38.3
Ca_04486_v3 Cicer arietinum L. HOM05D003715 ORTHO05D003958 2.5e-34 150.2 300 35.0
Actinidia30549 Actinidia chinensis HOM05D003715 ORTHO05D003958 9.5e-34 148.3 251 41.8
Oeu024502.1 Olea europaea HOM05D003715 ORTHO05D003958 1.6e-33 147.5 316 39.2
Lj1g0012553 Lotus japonicus HOM05D003715 ORTHO05D003958 2.1e-33 147.1 306 37.3
PSO384G3755 Papaver somniferum HOM05D003715 ORTHO05D003958 4.7e-33 146.0 319 37.3
Oeu035703.1 Olea europaea HOM05D003715 ORTHO05D003958 1.8e-32 144.1 316 37.7
arahy.Tifrunner.gnm1.ann1.V3MY1S Arachis hypogaea HOM05D003715 ORTHO05D003958 3.0e-32 143.3 299 35.8
Peaxi162Scf00463g00019 Petunia axillaris HOM05D003715 ORTHO05D003958 8.9e-32 141.7 326 38.0
DCAR_019875 Daucus carota HOM05D003715 ORTHO05D003958 1.2e-31 141.4 321 37.7
Nitab4.5_0000358g0150 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.2e-31 141.4 311 40.5
Duzib106G1922 Durio zibethinus HOM05D003715 ORTHO05D003958 3.4e-31 139.8 314 37.9
Gohir.A11G235300 Gossypium hirsutum HOM05D003715 ORTHO05D003958 3.4e-31 139.8 317 36.3
Medtr6g029250 Medicago truncatula HOM05D003715 ORTHO05D003958 5.7e-31 139.0 297 35.0
Aqoxy2G00514 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 9.8e-31 138.3 304 38.5
Lalb_Chr14g0364551 Lupinus albus HOM05D003715 ORTHO05D003958 1.3e-30 137.9 300 39.3
Gorai.007G262000 Gossypium raimondii HOM05D003715 ORTHO05D003958 1.7e-30 137.5 314 36.6
PGR142G1981 Punica granatum HOM05D003715 ORTHO05D003958 1.7e-30 137.5 315 38.4
Sed0021221 Sechium edule HOM05D003715 ORTHO05D003958 1.7e-30 137.5 310 39.4
TPR.G9142 Trifolium pratense HOM05D003715 ORTHO05D003958 2.2e-30 137.1 297 35.0
COL.COLO4_36085 Corchorus olitorius HOM05D003715 ORTHO05D003958 2.9e-30 136.7 321 36.1
Thecc.05G249800 Theobroma cacao HOM05D003715 ORTHO05D003958 3.7e-30 136.3 320 36.9
PSO781G0019 Papaver somniferum HOM05D003715 ORTHO05D003958 4.9e-30 136.0 299 38.1
Sc13g0002630 Simmondsia chinensis HOM05D003715 ORTHO05D003958 8.3e-30 135.2 308 35.4
TAR633G2492 Trochodendron aralioides HOM05D003715 ORTHO05D003958 8.3e-30 135.2 307 37.8
Phvul.001G111500 Phaseolus vulgaris HOM05D003715 ORTHO05D003958 1.4e-29 134.4 314 35.0
EL10Ac3g06828 Beta vulgaris HOM05D003715 ORTHO05D003958 3.2e-29 133.3 308 35.1
Peaxi162Scf00003g04827 Petunia axillaris HOM05D003715 ORTHO05D003958 7.0e-29 132.1 302 38.1
Gohir.D11G246200 Gossypium hirsutum HOM05D003715 ORTHO05D003958 1.6e-28 131.0 314 35.7
Lalb_Chr22g0359081 Lupinus albus HOM05D003715 ORTHO05D003958 2.7e-28 130.2 316 39.6
SGA_v2.0_scaffold94G28404 Striga asiatica HOM05D003715 ORTHO05D003958 3.5e-28 129.8 296 40.5
MBI04_g28023_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 5.9e-28 129.0 318 34.6
Nn7g35866 Nelumbo nucifera HOM05D003715 ORTHO05D003958 5.9e-28 129.0 282 38.7
TAR369G0375 Trochodendron aralioides HOM05D003715 ORTHO05D003958 7.8e-28 128.6 275 38.2
BcaB01g06399 Brassica carinata HOM05D003715 ORTHO05D003958 1.3e-27 127.9 304 32.6
Hund19231 Selenicereus undatus HOM05D003715 ORTHO05D003958 1.7e-27 127.5 307 35.5
Nitab4.5_0000658g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.3e-27 127.1 323 35.0
HanXRQChr14g0438161 Helianthus annuus HOM05D003715 ORTHO05D003958 3.9e-27 126.3 316 35.8
Psat1g091040 Pisum sativum HOM05D003715 ORTHO05D003958 6.6e-27 125.6 223 39.5
Thhalv10014292m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 8.6e-27 125.2 322 33.9
Cpa.g.sc51.130 Carica papaya HOM05D003715 ORTHO05D003958 1.5e-26 124.4 319 34.2
BolC3t13497H Brassica oleracea HOM05D003715 ORTHO05D003958 2.5e-26 123.6 305 32.8
BcaB01g05177 Brassica carinata HOM05D003715 ORTHO05D003958 3.3e-26 123.2 305 32.8
C03p10110 Brassica napus HOM05D003715 ORTHO05D003958 3.3e-26 123.2 305 32.8
BraA03t10190Z Brassica rapa HOM05D003715 ORTHO05D003958 3.3e-26 123.2 305 32.8
Sp6g26180 Schrenkiella parvula HOM05D003715 ORTHO05D003958 3.3e-26 123.2 316 34.5
MBI04_g47731_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 4.3e-26 122.9 187 44.4
A02p04750 Brassica napus HOM05D003715 ORTHO05D003958 5.6e-26 122.5 302 32.8
ECA238G2879 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.6e-25 120.9 312 35.3
Carub.0003s0306 Capsella rubella HOM05D003715 ORTHO05D003958 2.1e-25 120.6 307 34.5
Eucgr.K01502 Eucalyptus grandis HOM05D003715 ORTHO05D003958 6.2e-25 119.0 310 34.2
THA.LOC104820776 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 6.2e-25 119.0 314 31.5
VMungo1383G2890 Vigna mungo HOM05D003715 ORTHO05D003958 8.0e-25 118.6 304 32.6
Ah.13g075440 Amaranthus hybridus HOM05D006363 ORTHO05D007920 1.4e-24 117.9 233 38.6
AL6G29330 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.4e-24 117.9 324 33.6
A03p08670 Brassica napus HOM05D003715 ORTHO05D003958 1.4e-24 117.9 305 31.1
AT5G18130 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 3.1e-24 116.7 324 34.0
BraA02t05434Z Brassica rapa HOM05D003715 ORTHO05D003958 4.0e-24 116.3 302 30.8
C02p09710 Brassica napus HOM05D003715 ORTHO05D003958 1.5e-23 114.4 306 32.4
BolC2t06880H Brassica oleracea HOM05D003715 ORTHO05D003958 2.0e-23 114.0 306 32.4
CARHR077990 Cardamine hirsuta HOM05D003715 ORTHO05D003958 5.8e-23 112.5 308 31.8
Glyma.19G112800 Glycine max HOM05D003715 ORTHO05D003958 7.5e-23 112.1 317 34.7
BcaB05g23302 Brassica carinata HOM05D003715 ORTHO05D003958 9.8e-23 111.7 308 32.1
BcaC05g30247 Brassica carinata HOM05D003715 ORTHO05D003958 9.8e-23 111.7 302 31.8
A10p21370 Brassica napus HOM05D003715 ORTHO05D003958 9.8e-23 111.7 308 30.5
Thhalv10021350m.g Eutrema salsugineum HOM05D003715 ORTHO05D003958 1.7e-22 110.9 303 33.3
Sp3g02840 Schrenkiella parvula HOM05D003715 ORTHO05D003958 2.2e-22 110.5 303 33.0
BcaNung05741 Brassica carinata HOM05D003715 ORTHO05D003958 2.9e-22 110.2 308 32.5
C09p58840 Brassica napus HOM05D003715 ORTHO05D003958 2.9e-22 110.2 306 30.1
A05p43520 Brassica napus HOM05D003715 ORTHO05D003958 3.7e-22 109.8 302 31.5
BcaC03g13579 Brassica carinata HOM05D003715 ORTHO05D003958 6.4e-22 109.0 306 31.4
Glyma.16G040300 Glycine max HOM05D003715 ORTHO05D003958 8.3e-22 108.6 173 42.2
ECA233G0839 Erigeron canadensis HOM05D003715 ORTHO05D003958 1.4e-21 107.8 302 34.4
CSS0027479 Camellia sinensis var. sinensis HOM05D003715 ORTHO05D003958 3.2e-21 106.7 92 56.5
arahy.Tifrunner.gnm1.ann1.KTU7AY Arachis hypogaea HOM05D003715 ORTHO05D003958 5.4e-21 105.9 94 57.4
Carub.0006s1642 Capsella rubella HOM05D003715 ORTHO05D003958 5.4e-21 105.9 312 31.4
BraA10t44200Z Brassica rapa HOM05D003715 ORTHO05D003958 7.0e-21 105.5 267 30.7
BcaC05g29901 Brassica carinata HOM05D003715 ORTHO05D003958 1.2e-20 104.8 302 30.8
BolC5t34973H Brassica oleracea HOM05D003715 ORTHO05D003958 1.2e-20 104.8 302 30.8
BolC1t05801H Brassica oleracea HOM05D003715 ORTHO05D003958 1.6e-20 104.4 308 32.1
BraA05t23092Z Brassica rapa HOM05D003715 ORTHO05D003958 2.0e-20 104.0 298 30.5
MBI04_g37012_MAGBIO Magnolia biondii HOM05D003715 ORTHO05D003958 2.0e-20 104.0 184 39.1
Nitab4.5_0000394g0140 Nicotiana tabacum HOM05D003715 ORTHO05D003958 2.0e-20 104.0 318 33.0
BolC9t58728H Brassica oleracea HOM05D003715 ORTHO05D003958 2.7e-20 103.6 269 31.6
ATR0737G080 Amborella trichopoda HOM05D003715 ORTHO05D003958 4.6e-20 102.8 306 29.1
SalBow1G3164 Salvia bowleyana HOM05D003715 ORTHO05D003958 4.6e-20 102.8 294 32.0
AL3G13760 Arabidopsis lyrata HOM05D003715 ORTHO05D003958 1.0e-19 101.7 310 31.0
AT3G03870 Arabidopsis thaliana HOM05D003715 ORTHO05D003958 1.0e-19 101.7 313 31.0
Rhsim04G0091400 Rhododendron simsii HOM05D006013 ORTHO05D007383 1.0e-19 101.7 261 35.6
Aa31LG11G11470 Aethionema arabicum HOM05D003715 ORTHO05D003958 2.3e-19 100.5 234 35.9
CARHR194940 Cardamine hirsuta HOM05D003715 ORTHO05D003958 2.3e-19 100.5 317 30.9
Nitab4.5_0009367g0020 Nicotiana tabacum HOM05D003715 ORTHO05D003958 6.6e-19 99.0 294 32.0
BcaB08g36703 Brassica carinata HOM05D003715 ORTHO05D003958 8.6e-19 98.6 178 37.6
Aqoxy1G00472 Aquilegia oxysepala HOM05D003715 ORTHO05D003958 3.3e-18 96.7 297 29.6
Lsat_1_v5_gn_6_37461 Lactuca sativa HOM05D003715 ORTHO05D003958 9.5e-18 95.1 300 29.7
HanXRQChr02g0054571 Helianthus annuus HOM05D003715 ORTHO05D003958 1.2e-17 94.7 300 33.0
Aa31LG5G14450 Aethionema arabicum HOM05D003715 ORTHO05D003958 1.6e-17 94.4 304 30.9
vmacro09135 Vaccinium macrocarpon HOM05D003715 ORTHO05D003958 1.6e-17 94.4 261 36.4
Solyc10g080670.2 Solanum lycopersicum HOM05D003715 ORTHO05D003958 2.1e-17 94.0 294 32.3
Cc06_g23060 Coffea canephora HOM05D003715 ORTHO05D003958 3.6e-17 93.2 167 39.5
Sopen10g031210 Solanum pennellii HOM05D003715 ORTHO05D003958 4.7e-17 92.8 292 32.2
Actinidia38611 Actinidia chinensis HOM05D003715 ORTHO05D003958 8.1e-17 92.0 290 33.1
Duzib128G0041 Durio zibethinus HOM05D003715 ORTHO05D003958 1.4e-16 91.3 302 29.5
AUR62032043 Chenopodium quinoa HOM05D003715 ORTHO05D003958 5.2e-16 89.4 309 30.1
CDE02G4343 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 8.9e-16 88.6 310 28.7
BcaC05g30288 Brassica carinata HOM05D003715 ORTHO05D003958 1.5e-15 87.8 224 32.6
FAN28G1691 Fragaria x ananassa HOM05D003715 ORTHO05D003958 1.5e-15 87.8 154 44.2
THA.LOC104802870 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 5.8e-15 85.9 300 31.7
Ah.04g153150 Amaranthus hybridus HOM05D003715 ORTHO05D003958 9.8e-15 85.1 300 29.3
CDE05G3048 Ceratophyllum demersum HOM05D003715 ORTHO05D003958 9.8e-15 85.1 181 33.1
HanXRQChr13g0397871 Helianthus annuus HOM05D003715 ORTHO05D003958 9.8e-15 85.1 302 28.8
Nitab4.5_0001079g0120 Nicotiana tabacum HOM05D003715 ORTHO05D003958 1.7e-14 84.3 211 34.6
AUR62032710 Chenopodium quinoa HOM05D003715 ORTHO05D003958 2.2e-14 84.0 307 30.0
PGSC0003DMG400023700 Solanum tuberosum HOM05D003715 ORTHO05D003958 1.9e-13 80.9 295 29.5
arahy.Tifrunner.gnm1.ann1.FCYU2S Arachis hypogaea HOM05D003715 ORTHO05D003958 4.1e-13 79.7 308 27.9
Os03g0806600 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 6.0e-12 75.9 92 42.4
Lsat_1_v5_gn_2_58261 Lactuca sativa HOM05D003715 ORTHO05D003958 7.8e-12 75.5 275 30.9
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 5.1e-11 72.8 67 55.2
Duzib106G0556 Durio zibethinus HOM05D003715 ORTHO05D003958 8.6e-11 72.0 244 32.4
arahy.Tifrunner.gnm1.ann1.85Z4HY Arachis hypogaea HOM05D003715 ORTHO05D003958 1.1e-10 71.6 298 26.5
Zm00001eb302900 Zea mays HOM05D003715 ORTHO05D003958 1.1e-10 71.6 95 36.8
PSO384G3057 Papaver somniferum HOM05D003715 ORTHO05D003958 7.3e-10 68.9 151 35.8
HPP92_014229 Vanilla planifolia HOM05D035551 ORTHO05D003958 4.7e-09 66.2 94 44.7
THA.LOC104827275 Tarenaya hassleriana HOM05D003715 ORTHO05D003958 1.1e-08 65.1 272 29.8
Peaxi162Scf00249g00717 Petunia axillaris HOM05D003715 ORTHO05D003958 1.5e-07 61.2 288 28.1
Os07g0204100 Oryza sativa ssp. japonica HOM05D003715 ORTHO05D003958 7.6e-07 58.9 93 36.6
SEGI_20586 Sequoiadendron giganteum HOM05D003715 ORTHO05D003958 9.9e-07 58.5 93 37.6
PSO782G0808 Papaver somniferum HOM05D003715 ORTHO05D003958 1.3e-06 58.2 142 35.2
TAR633G2325 Trochodendron aralioides HOM05D003715 ORTHO05D003958 1.3e-06 58.2 150 38.0


User provided reference genes

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