Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1282300 Malus domestica HOM05D004237 ORTHO05D005002 3.9e-220 768.1 457 100.0
MD04G1016300 Malus domestica HOM05D004237 ORTHO05D005002 7.9e-181 637.5 463 78.4
Prupe.1G163000 Prunus persica HOM05D004237 ORTHO05D005002 2.9e-167 592.4 457 79.9
RcHm_v2.0_Chr4g0413771 Rosa chinensis HOM05D004237 ORTHO05D005002 9.1e-145 517.7 457 76.4
FvH4_4g13400 Fragaria vesca HOM05D004237 ORTHO05D005002 7.2e-142 508.1 458 73.1
FAN12G1632 Fragaria x ananassa HOM05D004237 ORTHO05D005002 4.4e-139 498.8 452 72.6
FAN07G1461 Fragaria x ananassa HOM05D004237 ORTHO05D005002 5.0e-135 485.3 452 72.1
CANSAT78G0306 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-134 484.2 460 67.2
Cfa014954 Carpinus fangiana HOM05D004237 ORTHO05D005002 5.9e-128 461.8 460 68.3
Haze_11643 Corylus avellana HOM05D004237 ORTHO05D005002 1.7e-127 460.3 460 67.2
Dinv27207 Davidia involucrata HOM05D004237 ORTHO05D005002 8.6e-127 458.0 459 63.4
Atru.chr4.1600 Acer truncatum HOM05D004237 ORTHO05D005002 1.6e-125 453.8 463 61.3
Cpa.g.sc83.32 Carica papaya HOM05D004237 ORTHO05D005002 4.9e-122 442.2 463 62.4
Thecc.04G196500 Theobroma cacao HOM05D004237 ORTHO05D005002 2.4e-121 439.9 469 62.9
Lj4g0001711 Lotus japonicus HOM05D004237 ORTHO05D005002 3.2e-121 439.5 472 54.7
Oeu063463.1 Olea europaea HOM05D004237 ORTHO05D005002 3.2e-121 439.5 462 62.1
Ciclev10004964m.g Citrus clementina HOM05D004237 ORTHO05D005002 5.4e-121 438.7 463 60.0
Ca_17976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 1.2e-120 437.6 474 55.3
CiPaw.01G118000 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.7e-120 436.4 460 62.6
Actinidia11451 Actinidia chinensis HOM05D004237 ORTHO05D005002 2.3e-119 433.3 460 61.5
VMungo0251G2499 Vigna mungo HOM05D004237 ORTHO05D005002 2.3e-119 433.3 465 60.9
Phvul.003G050200 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.1e-118 431.0 467 61.5
Dinv38185 Davidia involucrata HOM05D004237 ORTHO05D005002 1.9e-118 430.3 455 59.6
Duzib212G0922 Durio zibethinus HOM05D004237 ORTHO05D005002 3.3e-118 429.5 467 60.6
Sabra17G0051800 Salix brachista HOM05D004237 ORTHO05D005002 8.0e-117 424.9 463 61.3
Actinidia28992 Actinidia chinensis HOM05D004237 ORTHO05D005002 1.1e-116 424.5 460 61.3
Oeu025033.1 Olea europaea HOM05D004237 ORTHO05D005002 1.1e-116 424.5 462 64.1
Manes.15G056100 Manihot esculenta HOM05D004237 ORTHO05D005002 1.4e-116 424.1 466 57.1
Manes.03G145100 Manihot esculenta HOM05D004237 ORTHO05D005002 6.8e-116 421.8 463 55.9
Sabra16G0201600 Salix brachista HOM05D004237 ORTHO05D005002 8.9e-116 421.4 496 50.4
Potri.001G318600 Populus trichocarpa HOM05D004237 ORTHO05D005002 3.4e-115 419.5 464 61.2
Medtr8g085190 Medicago truncatula HOM05D004237 ORTHO05D005002 2.2e-114 416.8 468 54.7
PGSC0003DMG400026424 Solanum tuberosum HOM05D004237 ORTHO05D005002 3.7e-114 416.0 462 58.4
CSS0022501 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 6.4e-114 415.2 473 59.8
Hma1.2p1_2958F.1_g330800 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 5.4e-113 412.1 477 54.9
arahy.Tifrunner.gnm1.ann1.BLV0FA Arachis hypogaea HOM05D004237 ORTHO05D005002 3.5e-112 409.5 472 54.4
arahy.Tifrunner.gnm1.ann1.T9JHLZ Arachis hypogaea HOM05D004237 ORTHO05D005002 3.5e-112 409.5 472 54.4
Sc13g0000310 Simmondsia chinensis HOM05D004237 ORTHO05D005002 4.6e-112 409.1 458 57.6
MELO3C020354.2 Cucumis melo HOM05D004237 ORTHO05D005002 1.1e-110 404.4 458 60.3
Lalb_Chr07g0186771 Lupinus albus HOM05D004237 ORTHO05D005002 2.5e-110 403.3 467 57.8
Potri.017G058200 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.6e-110 402.1 491 51.7
CsaV3_2G011170 Cucumis sativus L. HOM05D004237 ORTHO05D005002 7.3e-110 401.7 458 59.8
DCAR_030819 Daucus carota HOM05D004237 ORTHO05D005002 2.6e-107 393.3 458 58.7
vmacro15560 Vaccinium macrocarpon HOM05D004237 ORTHO05D005002 2.6e-107 393.3 458 58.1
Gohir.A10G128300 Gossypium hirsutum HOM05D004237 ORTHO05D005002 7.5e-107 391.7 467 58.7
Peaxi162Scf00047g00110 Petunia axillaris HOM05D004237 ORTHO05D005002 3.5e-104 382.9 462 52.6
Solyc09g092210.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 3.5e-104 382.9 462 55.6
Sopen09g035130 Solanum pennellii HOM05D004237 ORTHO05D005002 6.0e-104 382.1 462 55.6
MSTRG.21980 Avicennia marina HOM05D004237 ORTHO05D005002 7.8e-104 381.7 458 50.0
QL06p026437 Quercus lobata HOM05D004237 ORTHO05D005002 1.5e-102 377.5 462 51.9
Rhsim02G0061200 Rhododendron simsii HOM05D004237 ORTHO05D005002 5.6e-102 375.6 458 56.3
RhsimUnG0035800 Rhododendron simsii HOM05D004237 ORTHO05D005002 5.6e-102 375.6 458 56.3
Gorai.011G152800 Gossypium raimondii HOM05D004237 ORTHO05D005002 1.2e-101 374.4 444 56.1
GSVIVG01021000001 Vitis vinifera HOM05D004237 ORTHO05D005002 1.2e-101 374.4 462 52.2
Sed0001983 Sechium edule HOM05D004237 ORTHO05D005002 4.7e-101 372.5 435 59.3
COL.COLO4_20213 Corchorus olitorius HOM05D004237 ORTHO05D005002 6.2e-101 372.1 443 51.0
Gohir.D10G137600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.1e-100 371.3 444 58.8
AUR62020847 Chenopodium quinoa HOM05D004237 ORTHO05D005002 1.3e-98 364.4 427 54.6
Nitab4.5_0007828g0040 Nicotiana tabacum HOM05D004237 ORTHO05D005002 2.4e-97 360.1 462 53.0
CAN.G1565.17 Capsicum annuum HOM05D004237 ORTHO05D005002 3.2e-97 359.8 462 53.0
Aqoxy2G03968 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.3e-87 327.0 463 48.6
Eucgr.H02692 Eucalyptus grandis HOM05D004237 ORTHO05D005002 4.3e-86 322.8 460 50.9
Glyma.05G153300 Glycine max HOM05D004237 ORTHO05D005002 5.6e-86 322.4 465 50.1
ECA238G4613 Erigeron canadensis HOM05D004237 ORTHO05D005002 3.4e-83 313.2 438 49.3
HanXRQChr15g0484241 Helianthus annuus HOM05D004237 ORTHO05D005002 4.5e-83 312.8 458 48.9
TAR636G2161 Trochodendron aralioides HOM05D004237 ORTHO05D005002 6.4e-82 308.9 464 51.3
Glyma.08G110600 Glycine max HOM05D004237 ORTHO05D005002 7.1e-81 305.4 394 55.1
Lsat_1_v5_gn_2_45661 Lactuca sativa HOM05D004237 ORTHO05D005002 1.4e-76 291.2 458 51.7
Psat7g073000 Pisum sativum HOM05D004237 ORTHO05D005002 4.5e-75 286.2 457 40.9
MBI11_g07416_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 4.9e-74 282.7 458 46.9
CDE05G0646 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.4e-73 281.2 453 44.8
TPR.G11799 Trifolium pratense HOM05D004237 ORTHO05D005002 1.9e-73 280.8 243 60.9
ATR0561G250 Amborella trichopoda HOM05D004237 ORTHO05D005002 5.1e-71 272.7 471 46.9
Migut.N00416 Erythranthe guttata HOM05D004237 ORTHO05D005002 3.3e-70 270.0 435 46.4
SEGI_20207 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 9.7e-62 241.9 475 48.4
SGA_v2.0_scaffold31G12582 Striga asiatica HOM05D004237 ORTHO05D005002 9.4e-57 225.3 456 42.5
Nitab4.5_0000697g0020 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.3e-53 214.9 358 48.9
PSO017G6634 Papaver somniferum HOM05D004237 ORTHO05D005002 3.1e-52 210.3 475 46.9
unitig_45.g31537 Utricularia gibba HOM05D004237 ORTHO05D005002 1.5e-46 191.4 141 66.0
unitig_578.g16513 Utricularia gibba HOM05D004237 ORTHO05D005002 1.5e-46 191.4 141 66.0
SEGI_05374 Sequoiadendron giganteum HOM05D004237 ORTHO05D005002 7.2e-41 172.6 311 38.6
Mapoly0008s0013 Marchantia polymorpha HOM05D004237 ORTHO05D005002 2.6e-38 164.1 164 48.2
CSS0027261 Camellia sinensis var. sinensis HOM05D004237 ORTHO05D005002 1.3e-37 161.8 279 38.4
EL10Ac2g04487 Beta vulgaris HOM05D004237 ORTHO05D005002 6.3e-37 159.5 281 37.7
GSVIVG01030867001 Vitis vinifera HOM05D004237 ORTHO05D005002 3.1e-36 157.1 137 54.7
Oeu047420.1 Olea europaea HOM05D004237 ORTHO05D005002 9.1e-36 155.6 172 46.5
Nn3g18884 Nelumbo nucifera HOM05D004237 ORTHO05D005002 1.2e-35 155.2 285 37.9
Solyc02g091090.4 Solanum lycopersicum HOM05D004237 ORTHO05D005002 2.0e-35 154.5 193 45.1
Sopen02g035740 Solanum pennellii HOM05D004237 ORTHO05D005002 2.0e-35 154.5 193 45.1
TAR633G2403 Trochodendron aralioides HOM05D004237 ORTHO05D005002 2.0e-35 154.5 215 44.2
Manes.03G011500 Manihot esculenta HOM05D004237 ORTHO05D005002 2.6e-35 154.1 146 50.0
HanXRQChr09g0262291 Helianthus annuus HOM05D004237 ORTHO05D005002 3.5e-35 153.7 167 46.7
Potri.004G088000 Populus trichocarpa HOM05D004237 ORTHO05D005002 5.9e-35 152.9 137 51.1
SalBow3G4435 Salvia bowleyana HOM05D004237 ORTHO05D005002 1.0e-34 152.1 207 43.0
ECA232G1788 Erigeron canadensis HOM05D004237 ORTHO05D005002 1.3e-34 151.8 195 45.6
Lsat_1_v5_gn_4_154701 Lactuca sativa HOM05D004237 ORTHO05D005002 1.3e-34 151.8 190 44.7
Prupe.3G158400 Prunus persica HOM05D004237 ORTHO05D005002 1.3e-34 151.8 137 52.6
DCAR_025876 Daucus carota HOM05D004237 ORTHO05D005002 1.7e-34 151.4 161 50.9
Aqoxy5G01640 Aquilegia oxysepala HOM05D004237 ORTHO05D005002 2.2e-34 151.0 280 37.5
CAN.G625.84 Capsicum annuum HOM05D004237 ORTHO05D005002 2.2e-34 151.0 162 48.1
Cpa.g.sc118.40 Carica papaya HOM05D004237 ORTHO05D005002 2.2e-34 151.0 137 50.4
AUR62023243 Chenopodium quinoa HOM05D004237 ORTHO05D005002 3.8e-34 150.2 284 35.9
Hma1.2p1_3512F.1_g336510 Hydrangea macrophylla HOM05D004237 ORTHO05D005002 5.0e-34 149.8 225 42.2
ClCG05G010910 Citrullus lanatus HOM05D004237 ORTHO05D005002 6.5e-34 149.4 137 50.4
Dinv14873 Davidia involucrata HOM05D004237 ORTHO05D005002 6.5e-34 149.4 213 43.7
LjContig00141g0018818 Lotus japonicus HOM05D004237 ORTHO05D005002 8.5e-34 149.1 144 49.3
Sed0014224 Sechium edule HOM05D004237 ORTHO05D005002 8.5e-34 149.1 284 35.9
Thecc.10G175300 Theobroma cacao HOM05D004237 ORTHO05D005002 8.5e-34 149.1 288 35.8
unitig_899.g14517 Utricularia gibba HOM05D004236 ORTHO05D004903 8.5e-34 149.1 137 50.4
CANSAT54G2538 Cannabis sativa HOM05D004237 ORTHO05D005002 1.1e-33 148.7 156 48.1
FvH4_7g06071 Fragaria vesca HOM05D004237 ORTHO05D005002 1.1e-33 148.7 137 51.1
Gohir.A05G279600 Gossypium hirsutum HOM05D004237 ORTHO05D005002 1.1e-33 148.7 287 36.2
Lalb_Chr10g0104521 Lupinus albus HOM05D004237 ORTHO05D005002 1.1e-33 148.7 137 50.4
arahy.Tifrunner.gnm1.ann1.68W1N1 Arachis hypogaea HOM05D004237 ORTHO05D005002 1.5e-33 148.3 159 47.2
arahy.Tifrunner.gnm1.ann1.MQJ11K Arachis hypogaea HOM05D004237 ORTHO05D005002 1.5e-33 148.3 159 47.2
Glyma.02G247200 Glycine max HOM05D004237 ORTHO05D005002 1.5e-33 148.3 140 49.3
Rhsim08G0085800 Rhododendron simsii HOM05D004237 ORTHO05D005002 1.9e-33 147.9 201 44.3
CsaV3_3G021670 Cucumis sativus L. HOM05D004237 ORTHO05D005002 2.5e-33 147.5 137 49.6
RcHm_v2.0_Chr7g0221661 Rosa chinensis HOM05D004237 ORTHO05D005002 2.5e-33 147.5 137 51.1
unitig_45.g31538 Utricularia gibba HOM05D004237 ORTHO05D005002 2.5e-33 147.5 232 37.1
unitig_578.g16512 Utricularia gibba HOM05D004237 ORTHO05D005002 2.5e-33 147.5 232 37.1
Actinidia17655 Actinidia chinensis HOM05D004237 ORTHO05D005002 5.5e-33 146.4 188 44.7
TPR.G3499 Trifolium pratense HOM05D004237 ORTHO05D005002 5.5e-33 146.4 138 50.7
Atru.chr4.1671 Acer truncatum HOM05D004237 ORTHO05D005002 7.2e-33 146.0 280 36.1
Gohir.D05G281200 Gossypium hirsutum HOM05D004237 ORTHO05D005002 7.2e-33 146.0 289 35.3
Gorai.009G294600 Gossypium raimondii HOM05D004237 ORTHO05D005002 7.2e-33 146.0 289 35.3
MELO3C020294.2 Cucumis melo HOM05D004237 ORTHO05D005002 9.4e-33 145.6 137 48.9
CDE02G0048 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.2e-32 145.2 279 36.6
FAN06G1641 Fragaria x ananassa HOM05D004237 ORTHO05D005002 1.2e-32 145.2 166 46.4
Nitab4.5_0002248g0060 Nicotiana tabacum HOM05D004237 ORTHO05D005002 1.6e-32 144.8 249 39.4
Phvul.008G233700 Phaseolus vulgaris HOM05D004237 ORTHO05D005002 1.6e-32 144.8 140 47.9
QL11p004173 Quercus lobata HOM05D004237 ORTHO05D005002 1.6e-32 144.8 164 48.2
ATR0743G026 Amborella trichopoda HOM05D004237 ORTHO05D005002 2.1e-32 144.4 168 47.0
Migut.H00265 Erythranthe guttata HOM05D004237 ORTHO05D005002 2.1e-32 144.4 164 45.1
CiPaw.03G068200 Carya illinoinensis HOM05D004237 ORTHO05D005002 2.7e-32 144.1 156 46.2
Cc07_g08200 Coffea canephora HOM05D004237 ORTHO05D005002 2.7e-32 144.1 247 39.3
Ca_05866_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.7e-32 143.3 137 49.6
Ca_29976_v3 Cicer arietinum L. HOM05D004237 ORTHO05D005002 4.7e-32 143.3 137 49.6
SGA_v2.0_scaffold149G36490 Striga asiatica HOM05D004237 ORTHO05D005002 4.7e-32 143.3 257 37.7
Sabra04G0058600 Salix brachista HOM05D004237 ORTHO05D005002 8.0e-32 142.5 317 32.5
HPP92_024243 Vanilla planifolia HOM05D004237 ORTHO05D005002 8.0e-32 142.5 463 34.3
MBI08_g18909_MAGBIO Magnolia biondii HOM05D004237 ORTHO05D005002 1.0e-31 142.1 155 45.2
Psat2g041040 Pisum sativum HOM05D004237 ORTHO05D005002 1.0e-31 142.1 137 51.1
PGR004G2154 Punica granatum HOM05D004237 ORTHO05D005002 1.0e-31 142.1 281 36.7
Sc11g0008610 Simmondsia chinensis HOM05D004237 ORTHO05D005002 2.3e-31 141.0 245 40.8
Duzib106G0201 Durio zibethinus HOM05D004237 ORTHO05D005002 3.0e-31 140.6 279 36.2
Medtr5g079680 Medicago truncatula HOM05D004237 ORTHO05D005002 3.0e-31 140.6 137 49.6
Cfa007846 Carpinus fangiana HOM05D004237 ORTHO05D005002 5.2e-31 139.8 295 33.2
Hund16204 Selenicereus undatus HOM05D004237 ORTHO05D005002 8.8e-31 139.0 447 30.2
CDE09G1075 Ceratophyllum demersum HOM05D004237 ORTHO05D005002 1.5e-30 138.3 250 38.0
MD09G1261100 Malus domestica HOM05D004237 ORTHO05D005002 1.5e-30 138.3 265 38.5
Eucgr.F02819 Eucalyptus grandis HOM05D004237 ORTHO05D005002 2.6e-30 137.5 293 34.8
TPR.G11942 Trifolium pratense HOM05D004237 ORTHO05D005002 5.7e-30 136.3 78 83.3
CBR_g29388 Chara braunii HOM05D004237 ORTHO05D005002 1.3e-29 135.2 134 47.8
SHI19441 Sapria himalayana HOM05D004237 ORTHO05D005002 2.2e-29 134.4 313 32.9
Haze_14220 Corylus avellana HOM05D004237 ORTHO05D005002 9.1e-28 129.0 284 34.5
SHI01026 Sapria himalayana HOM05D004237 ORTHO05D005002 1.2e-22 112.1 387 40.6
Lj6P390T29 Lonicera japonica HOM05D004237 ORTHO05D005002 3.4e-22 110.5 134 49.3
FvH4_4g13413 Fragaria vesca HOM05D004237 ORTHO05D196496 1.7e-13 81.6 131 55.7
RcHm_v2.0_Chr1g0334211 Rosa chinensis HOM05D004237 ORTHO05D005002 3.1e-07 60.8 70 44.3


User provided reference genes

Program Settings