Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1267100 Malus domestica HOM05D000306 ORTHO05D007657 0.0e+00 1198.7 631 100.0
Prupe.1G089400 Prunus persica HOM05D000306 ORTHO05D007657 0.0e+00 1080.9 631 86.1
FvH4_4g09080 Fragaria vesca HOM05D000306 ORTHO05D007657 9.2e-305 1049.7 626 83.5
FAN22G1929 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.9e-297 1025.4 649 79.8
CiPaw.07G190000 Carya illinoinensis HOM05D000306 ORTHO05D007657 3.2e-297 1024.6 632 80.9
QL02p097271 Quercus lobata HOM05D000306 ORTHO05D007657 3.3e-294 1014.6 634 79.7
FAN12G4153 Fragaria x ananassa HOM05D000306 ORTHO05D007657 4.3e-294 1014.2 691 75.8
Dinv42746 Davidia involucrata HOM05D000306 ORTHO05D007657 6.2e-293 1010.4 631 79.7
Dinv43355 Davidia involucrata HOM05D000306 ORTHO05D007657 6.2e-293 1010.4 631 79.7
RcHm_v2.0_Chr4g0403081 Rosa chinensis HOM05D000306 ORTHO05D007657 4.0e-292 1007.7 576 86.1
Manes.06G026700 Manihot esculenta HOM05D000306 ORTHO05D007657 7.8e-288 993.4 631 78.1
Cpa.g.sc95.65 Carica papaya HOM05D000306 ORTHO05D007657 2.3e-287 991.9 631 78.8
Potri.018G095700 Populus trichocarpa HOM05D000306 ORTHO05D007657 2.3e-287 991.9 629 77.7
Actinidia17107 Actinidia chinensis HOM05D000306 ORTHO05D007657 3.0e-287 991.5 631 78.3
Eucgr.C00188 Eucalyptus grandis HOM05D000306 ORTHO05D007657 6.6e-287 990.3 576 83.0
GSVIVG01029150001 Vitis vinifera HOM05D000306 ORTHO05D007657 1.5e-286 989.2 574 83.6
Gorai.009G006500 Gossypium raimondii HOM05D000306 ORTHO05D007657 2.5e-286 988.4 633 78.4
Hma1.2p1_3301F.1_g335020 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 2.1e-285 985.3 571 84.8
CSS0004024 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 1.1e-284 983.0 576 82.6
Gohir.D05G006400 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.6e-283 978.4 631 78.1
Sabra18G0081600 Salix brachista HOM05D000306 ORTHO05D007657 2.6e-283 978.4 601 79.7
CsaV3_2G008000 Cucumis sativus L. HOM05D000306 ORTHO05D007657 7.6e-283 976.9 634 76.2
Aqoxy7G03118 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.3e-282 976.1 573 82.7
THA.LOC104803506 Tarenaya hassleriana HOM05D000306 ORTHO05D007657 3.8e-282 974.5 570 82.3
Haze_22120 Corylus avellana HOM05D000306 ORTHO05D007657 2.4e-281 971.8 645 76.9
Thhalv10024769m.g Eutrema salsugineum HOM05D000306 ORTHO05D007657 2.4e-281 971.8 570 82.5
CANSAT11G0744 Cannabis sativa HOM05D000306 ORTHO05D007657 3.2e-281 971.5 635 78.7
PGR142G2969 Punica granatum HOM05D000306 ORTHO05D007657 1.2e-280 969.5 632 76.7
ClCG11G012530 Citrullus lanatus HOM05D000306 ORTHO05D007657 2.7e-280 968.4 610 78.5
Oeu042129.1 Olea europaea HOM05D000306 ORTHO05D007657 1.0e-279 966.5 569 81.4
PSO063G6265 Papaver somniferum HOM05D000306 ORTHO05D007657 1.3e-279 966.1 575 80.9
AL7G21840 Arabidopsis lyrata HOM05D000306 ORTHO05D007657 3.0e-279 964.9 570 81.6
Sp7g28180 Schrenkiella parvula HOM05D000306 ORTHO05D007657 5.1e-279 964.1 570 81.6
PSO782G2546 Papaver somniferum HOM05D000306 ORTHO05D007657 6.6e-279 963.8 575 80.7
FAN17G2452 Fragaria x ananassa HOM05D000306 ORTHO05D007657 1.1e-278 963.0 634 77.9
Nn2g12665 Nelumbo nucifera HOM05D000306 ORTHO05D007657 1.5e-278 962.6 571 80.7
Sed0007717 Sechium edule HOM05D000306 ORTHO05D007657 3.3e-278 961.4 569 82.2
Carub.0007s1029 Capsella rubella HOM05D000306 ORTHO05D007657 1.8e-276 955.7 570 80.7
BraA03t15029Z Brassica rapa HOM05D000306 ORTHO05D007657 6.9e-276 953.7 582 80.9
BolC7t46241H Brassica oleracea HOM05D000306 ORTHO05D007657 9.0e-276 953.4 582 80.9
A03p59750 Brassica napus HOM05D000306 ORTHO05D007657 1.2e-275 953.0 582 80.8
C07p57810 Brassica napus HOM05D000306 ORTHO05D007657 1.5e-275 952.6 582 80.8
Migut.J01462 Erythranthe guttata HOM05D000306 ORTHO05D007657 2.0e-275 952.2 577 80.4
vmacro13107 Vaccinium macrocarpon HOM05D000306 ORTHO05D007657 4.9e-274 947.6 744 67.3
Ciclev10007754m.g Citrus clementina HOM05D000306 ORTHO05D007657 1.1e-273 946.4 574 80.3
VMungo1215G2115 Vigna mungo HOM05D000306 ORTHO05D007657 7.1e-273 943.7 571 81.4
Solyc07g006780.3 Solanum lycopersicum HOM05D000306 ORTHO05D007657 1.2e-272 943.0 569 80.3
TWI34G1080 Tripterygium wilfordii HOM05D000306 ORTHO05D007657 2.7e-272 941.8 630 74.6
Nitab4.5_0000937g0030 Nicotiana tabacum HOM05D000306 ORTHO05D007657 6.0e-272 940.6 572 79.5
Sopen07g002880 Solanum pennellii HOM05D000306 ORTHO05D007657 6.0e-272 940.6 569 80.1
arahy.Tifrunner.gnm1.ann1.2QW3Q9 Arachis hypogaea HOM05D000306 ORTHO05D007657 3.9e-271 937.9 580 80.9
CAN.G584.11 Capsicum annuum HOM05D000306 ORTHO05D007657 5.1e-271 937.6 576 79.2
PGSC0003DMG400018753 Solanum tuberosum HOM05D000306 ORTHO05D007657 6.7e-271 937.2 569 80.1
BcaNung00538 Brassica carinata HOM05D000306 ORTHO05D007657 5.6e-270 934.1 571 81.1
ECA240G1428 Erigeron canadensis HOM05D000306 ORTHO05D005993 5.6e-270 934.1 569 79.3
HanXRQChr03g0068931 Helianthus annuus HOM05D000306 ORTHO05D007657 1.6e-269 932.6 572 79.9
Rhsim01G0007000 Rhododendron simsii HOM05D000306 ORTHO05D007657 3.7e-269 931.4 665 72.3
Glyma.17G065600 Glycine max HOM05D000306 ORTHO05D007657 6.9e-268 927.2 574 80.1
EL10Ac8g18267 Beta vulgaris HOM05D000306 ORTHO05D007657 1.2e-267 926.4 576 77.8
Cfa013520 Carpinus fangiana HOM05D000306 ORTHO05D007657 2.6e-267 925.2 637 74.3
Gohir.A05G005700 Gossypium hirsutum HOM05D000306 ORTHO05D007657 2.6e-267 925.2 593 78.2
ATR0580G308 Amborella trichopoda HOM05D000306 ORTHO05D007657 3.8e-266 921.4 574 76.8
Lj4g0000904 Lotus japonicus HOM05D000306 ORTHO05D007657 4.9e-266 921.0 572 80.2
Zm00001eb069070 Zea mays HOM05D000306 ORTHO05D007657 8.4e-266 920.2 569 77.7
Cc06_g13490 Coffea canephora HOM05D000306 ORTHO05D007657 5.5e-265 917.5 574 77.5
Lalb_Chr07g0180291 Lupinus albus HOM05D000306 ORTHO05D007657 7.9e-264 913.7 569 80.0
HPP92_013461 Vanilla planifolia HOM05D000306 ORTHO05D007657 3.0e-263 911.8 572 76.7
Ca_21206_v3 Cicer arietinum L. HOM05D000306 ORTHO05D007657 3.9e-263 911.4 572 79.0
Lsat_1_v5_gn_7_54281 Lactuca sativa HOM05D000306 ORTHO05D007657 8.7e-263 910.2 581 76.9
Peaxi162Scf00050g00633 Petunia axillaris HOM05D000306 ORTHO05D007657 2.5e-262 908.7 568 78.0
Medtr4g128640 Medicago truncatula HOM05D000306 ORTHO05D007657 5.6e-262 907.5 578 78.0
CDE04G1293 Ceratophyllum demersum HOM05D000306 ORTHO05D007657 9.6e-262 906.7 573 76.8
Nitab4.5_0000244g0290 Nicotiana tabacum HOM05D000306 ORTHO05D007657 6.2e-261 904.0 581 77.1
Phvul.003G148000 Phaseolus vulgaris HOM05D000306 ORTHO05D007657 6.9e-260 900.6 574 77.9
Duzib150G0020 Durio zibethinus HOM05D000306 ORTHO05D007657 1.5e-259 899.4 634 72.9
MBI16_g41815_MAGBIO Magnolia biondii HOM05D000306 ORTHO05D007657 1.0e-258 896.7 569 77.9
Hma1.2p1_1423F.1_g282590 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 8.4e-258 893.6 572 78.5
Sc14g0001220 Simmondsia chinensis HOM05D000306 ORTHO05D007657 1.9e-257 892.5 543 81.2
Hund00645 Selenicereus undatus HOM05D000306 ORTHO05D007657 7.9e-256 887.1 656 67.1
AUR62039995 Chenopodium quinoa HOM05D000306 ORTHO05D007657 8.2e-253 877.1 598 72.4
AUR62040301 Chenopodium quinoa HOM05D000306 ORTHO05D007657 8.2e-253 877.1 585 73.8
Glyma.13G094600 Glycine max HOM05D000306 ORTHO05D007657 2.5e-246 855.5 533 79.4
Atru.chr7.723 Acer truncatum HOM05D000306 ORTHO05D007657 1.0e-242 843.6 549 76.0
Aa31LG2G20220 Aethionema arabicum HOM05D000306 ORTHO05D007657 3.2e-241 838.6 530 76.2
ECA240G0310 Erigeron canadensis HOM05D000306 ORTHO05D007657 6.7e-239 830.9 608 69.1
TAR383G0632 Trochodendron aralioides HOM05D000306 ORTHO05D007657 2.8e-237 825.5 468 84.6
Thecc.09G168500 Theobroma cacao HOM05D000306 ORTHO05D007657 5.9e-235 817.8 462 85.3
Mapoly0003s0282 Marchantia polymorpha HOM05D000306 ORTHO05D007657 3.3e-230 802.0 575 66.1
Pp3c23_15560 Physcomitrium patens HOM05D000306 ORTHO05D007657 1.5e-225 786.6 571 67.3
AT4G30310 Arabidopsis thaliana HOM05D000306 ORTHO05D007657 2.7e-224 782.3 462 80.3
TPR.G5313 Trifolium pratense HOM05D000306 ORTHO05D007657 5.3e-220 768.1 489 77.3
Psat4g012000 Pisum sativum HOM05D000306 ORTHO05D007657 2.6e-214 749.2 471 78.6
DCAR_020115 Daucus carota HOM05D000306 ORTHO05D007657 1.5e-206 723.4 440 79.5
SGA_v2.0_scaffold69G23280 Striga asiatica HOM05D000306 ORTHO05D007657 1.7e-205 719.9 468 75.6
Lj9A688T83 Lonicera japonica HOM05D000306 ORTHO05D007657 1.7e-202 709.9 465 75.7
CARHR238220 Cardamine hirsuta HOM05D000306 ORTHO05D007657 9.8e-190 667.5 399 79.7
Hma1.2p1_0342F.1_g130620 Hydrangea macrophylla HOM05D000306 ORTHO05D007657 9.8e-190 667.5 599 62.4
AagrBONN_evm.TU.Sc2ySwM_117.626 Anthoceros agrestis HOM05D000306 ORTHO05D007657 5.1e-186 655.2 531 60.6
Hund00646 Selenicereus undatus HOM05D000306 ORTHO05D007657 9.5e-185 651.0 592 58.6
RcHm_v2.0_Chr4g0405011 Rosa chinensis HOM05D000306 ORTHO05D007657 1.9e-164 583.6 358 79.9
Os02g0177900 Oryza sativa ssp. japonica HOM05D000306 ORTHO05D007657 1.5e-158 563.9 351 77.5
MELO3C004085.2 Cucumis melo HOM05D000306 ORTHO05D007657 2.1e-152 543.5 631 50.1
SMO239G0169 Selaginella moellendorffii HOM05D000306 ORTHO05D007657 1.4e-151 540.8 461 59.2
Nn8g40502 Nelumbo nucifera HOM05D000306 ORTHO05D007657 3.0e-146 523.1 318 80.2
SEGI_13713 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 4.2e-132 476.1 310 71.9
Haze_26997 Corylus avellana HOM05D000306 ORTHO05D007657 4.5e-126 456.1 561 45.1
Aqoxy3G01085 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.4e-119 433.7 267 79.4
Nn2g14416 Nelumbo nucifera HOM05D000306 ORTHO05D007657 9.1e-119 431.8 239 85.8
SHI02941 Sapria himalayana HOM05D000306 ORTHO05D007657 2.0e-110 404.1 265 75.1
CSS0008880 Camellia sinensis var. sinensis HOM05D000306 ORTHO05D007657 9.4e-108 395.2 240 79.6
Cfa026537 Carpinus fangiana HOM05D000306 ORTHO05D007657 1.0e-93 348.6 590 36.8
Aqoxy1G02891 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.0e-82 312.0 208 75.0
Aqoxy3G01524 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 5.6e-76 289.7 175 80.6
Lj9A687T77 Lonicera japonica HOM05D000306 ORTHO05D007657 1.8e-66 258.1 205 67.3
Aqoxy1G03516 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 2.6e-57 227.6 187 65.2
MELO3C000682.2 Cucumis melo HOM05D000306 ORTHO05D007657 9.3e-55 219.2 121 86.0
arahy.Tifrunner.gnm1.ann1.ID2I7H Arachis hypogaea HOM05D000306 ORTHO05D007657 8.4e-48 196.1 128 77.3
HanXRQChr09g0255811 Helianthus annuus HOM05D000306 ORTHO05D007657 1.9e-47 194.9 125 76.8
SEGI_25583 Sequoiadendron giganteum HOM05D000306 ORTHO05D007657 1.9e-47 194.9 134 70.9
Cre12.g543902 Chlamydomonas reinhardtii HOM05D000306 ORTHO05D007657 6.0e-46 189.9 538 29.9
Aqoxy3G01525 Aquilegia oxysepala HOM05D000306 ORTHO05D007657 1.4e-39 168.7 88 88.6
Pp3s30_470 Physcomitrium patens HOM05D000306 ORTHO05D317356 1.4e-39 168.7 536 30.2
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 3.5e-38 164.1 557 26.4
MELO3C028573.2 Cucumis melo HOM05D000306 ORTHO05D007657 7.9e-30 136.3 104 62.5
QL02p086401 Quercus lobata HOM05D000306 ORTHO05D007657 1.4e-26 125.6 82 74.4
QL02p097096 Quercus lobata HOM05D000306 ORTHO05D007657 1.7e-24 118.6 82 70.7
arahy.Tifrunner.gnm1.ann1.MK7H36 Arachis hypogaea HOM05D000306 ORTHO05D007657 3.2e-23 114.4 64 79.7
SEGI_34135 Sequoiadendron giganteum HOM05D000306 ORTHO05D030075 2.1e-22 111.7 69 78.3
DCAR_020114 Daucus carota HOM05D000306 ORTHO05D007657 2.3e-21 108.2 78 71.8
RcHm_v2.0_Chr4g0405021 Rosa chinensis HOM05D000306 ORTHO05D030075 2.8e-19 101.3 59 84.7
QL02p097130 Quercus lobata HOM05D000306 ORTHO05D007657 8.2e-19 99.8 66 75.8
CAN.G790.37 Capsicum annuum HOM05D000306 ORTHO05D007657 4.1e-18 97.4 55 80.0
MD07G1169000 Malus domestica HOM05D000306 ORTHO05D030075 4.1e-18 97.4 60 86.7
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 2.1e-14 85.1 547 21.6
TPR.G18960 Trifolium pratense HOM05D000306 ORTHO05D007657 1.3e-11 75.9 45 82.2
arahy.Tifrunner.gnm1.ann1.QZT5UT Arachis hypogaea HOM05D000200 ORTHO05D010534 4.8e-11 73.9 50 80.0
unitig_699.g19091 Utricularia gibba HOM05D003206 ORTHO05D005207 1.8e-10 72.0 563 21.0
TPR.G20440 Trifolium pratense HOM05D000306 ORTHO05D050985 3.1e-10 71.2 41 82.9
MSTRG.11155 Avicennia marina HOM05D003206 ORTHO05D005207 1.5e-09 68.9 546 21.4
PGR102G2366 Punica granatum HOM05D003206 ORTHO05D005207 3.4e-09 67.8 534 22.3
PSO017G7051 Papaver somniferum HOM05D003206 ORTHO05D005207 7.7e-09 66.6 539 21.0
PSO170G1430 Papaver somniferum HOM05D003206 ORTHO05D005207 2.9e-08 64.7 539 20.8
SEGI_29302 Sequoiadendron giganteum HOM05D000306 ORTHO05D050985 5.0e-08 63.9 41 70.7
FAN09G0310 Fragaria x ananassa HOM05D003206 ORTHO05D005207 6.5e-08 63.5 540 21.5
Glyma.07G028600 Glycine max HOM05D003206 ORTHO05D005207 6.5e-08 63.5 531 21.7
QL02p097186 Quercus lobata HOM05D000306 ORTHO05D030075 8.5e-08 63.2 42 73.8
FAN02G2065 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.1e-07 62.8 540 21.5
FAN02G2439 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.1e-07 62.8 540 21.5
FAN14G4723 Fragaria x ananassa HOM05D003206 ORTHO05D005207 1.9e-07 62.0 542 21.6
SEGI_06294 Sequoiadendron giganteum HOM05D003206 ORTHO05D005207 3.2e-07 61.2 579 22.3
FvH4_6g29330 Fragaria vesca HOM05D003206 ORTHO05D005207 4.2e-07 60.8 540 21.3
FAN05G2875 Fragaria x ananassa HOM05D003206 ORTHO05D005207 4.2e-07 60.8 543 21.7
SGA_v2.0_scaffold5G02725 Striga asiatica HOM05D003206 ORTHO05D005207 4.2e-07 60.8 538 21.0
Cpa.g.sc10.151 Carica papaya HOM05D003206 ORTHO05D005207 3.6e-06 57.8 536 20.5


User provided reference genes

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