Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 1.5e-65 252.7 128 100.0
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 5.7e-52 207.6 128 82.0
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.4e-50 203.0 128 81.2
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 1.3e-40 169.9 129 69.8
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 7.2e-39 164.1 133 69.2
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 9.4e-39 163.7 125 68.8
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.6e-38 161.4 126 67.5
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 6.1e-38 161.0 133 65.4
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.7e-35 151.8 130 61.5
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.2e-32 142.5 128 61.7
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.9e-32 142.1 128 61.7
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 8.5e-32 140.6 128 62.5
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 4.2e-31 138.3 125 63.2
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.2e-30 136.7 125 63.2
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 1.6e-30 136.3 132 61.4
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 1.6e-30 136.3 125 62.4
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.7e-30 134.8 135 57.0
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.1e-30 134.4 132 60.6
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 6.1e-30 134.4 125 61.6
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.4e-29 133.3 126 58.7
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 1.4e-29 133.3 122 61.5
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 1.4e-29 133.3 129 55.0
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 3.0e-29 132.1 125 59.2
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 3.0e-29 132.1 131 56.5
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 5.1e-29 131.3 120 61.7
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 6.7e-29 131.0 126 57.1
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 6.7e-29 131.0 129 59.7
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 6.7e-29 131.0 119 63.0
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.8e-29 130.6 102 65.7
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 3.3e-28 128.6 119 58.8
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 3.3e-28 128.6 102 65.7
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 4.4e-28 128.3 122 54.1
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 1.3e-27 126.7 122 58.2
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.3e-27 126.7 128 57.0
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.3e-27 126.7 128 57.0
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 9.1e-26 120.6 129 56.6
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.5e-25 119.8 124 52.4
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.0e-25 119.4 127 55.9
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 2.6e-25 119.0 126 55.6
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 3.5e-25 118.6 120 56.7
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 4.5e-25 118.2 131 49.6
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.9e-25 117.9 127 52.8
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 5.9e-25 117.9 123 52.8
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.7e-25 117.5 127 52.0
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 7.7e-25 117.5 127 52.0
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.0e-24 117.1 117 54.7
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.3e-24 116.7 127 52.0
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 1.3e-24 116.7 132 49.2
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 2.9e-24 115.5 134 48.5
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 5.0e-24 114.8 124 54.8
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 5.0e-24 114.8 129 53.5
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 6.5e-24 114.4 134 55.2
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 8.5e-24 114.0 128 56.2
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.1e-23 113.6 160 46.2
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 1.5e-23 113.2 125 49.6
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 1.9e-23 112.8 125 56.8
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.9e-23 112.8 128 56.2
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 2.5e-23 112.5 120 52.5
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 4.2e-23 111.7 117 54.7
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 5.5e-23 111.3 119 49.6
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 9.4e-23 110.5 125 54.4
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 2.1e-22 109.4 135 49.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 2.7e-22 109.0 131 56.5
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 3.6e-22 108.6 131 48.9
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 4.7e-22 108.2 131 49.6
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 4.7e-22 108.2 126 50.0
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 6.1e-22 107.8 129 45.7
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 8.0e-22 107.5 131 48.1
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 8.0e-22 107.5 125 50.4
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 8.0e-22 107.5 124 54.0
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 8.0e-22 107.5 135 50.4
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 2.3e-21 105.9 130 49.2
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 4.0e-21 105.1 130 49.2
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 5.2e-21 104.8 135 46.7
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 6.7e-21 104.4 140 45.0
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 6.7e-21 104.4 122 50.0
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 8.8e-21 104.0 125 50.4
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 8.8e-21 104.0 125 50.4
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.1e-20 103.6 123 48.0
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 1.1e-20 103.6 123 49.6
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.1e-20 103.6 120 50.0
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.5e-20 103.2 132 47.7
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 2.6e-20 102.4 121 49.6
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.6e-20 102.4 111 51.4
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 3.3e-20 102.1 115 54.8
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 5.7e-20 101.3 122 51.6
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.7e-20 101.3 118 43.2
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 7.4e-20 100.9 131 47.3
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 7.4e-20 100.9 131 47.3
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 7.4e-20 100.9 119 47.9
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 9.7e-20 100.5 129 48.1
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 1.3e-19 100.1 116 50.0
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 2.2e-19 99.4 131 47.3
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.8e-19 99.0 123 43.9
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 2.8e-19 99.0 125 47.2
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.8e-19 99.0 122 49.2
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 4.8e-19 98.2 124 46.0
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.8e-19 98.2 119 47.9
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 8.2e-19 97.4 122 51.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-18 97.1 116 50.9
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.1e-18 97.1 121 42.1
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.4e-18 96.7 120 48.3
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 1.8e-18 96.3 118 47.5
HanXRQChr05g0137241 Helianthus annuus HOM05D001798 ORTHO05D005040 3.1e-18 95.5 147 42.9
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.1e-18 95.1 125 43.2
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 4.1e-18 95.1 125 43.2
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 5.3e-18 94.7 117 47.9
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 5.3e-18 94.7 138 45.7
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 5.3e-18 94.7 115 50.4
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 7.0e-18 94.4 119 45.4
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.2e-17 93.6 115 47.8
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.0e-17 92.8 118 45.8
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 3.5e-17 92.0 113 52.2
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 5.9e-17 91.3 114 49.1
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 5.9e-17 91.3 122 45.1
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 1.0e-16 90.5 123 44.7
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.0e-16 90.5 114 49.1
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.7e-16 89.7 112 47.3
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 3.8e-16 88.6 137 41.6
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 3.8e-16 88.6 132 43.2
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.8e-16 88.6 127 43.3
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 3.8e-16 88.6 118 44.1
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 6.5e-16 87.8 127 44.1
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 6.5e-16 87.8 130 42.3
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 8.5e-16 87.4 127 44.1
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 8.5e-16 87.4 129 40.3
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 8.5e-16 87.4 117 42.7
Lsat_1_v5_gn_7_54461 Lactuca sativa HOM05D001798 ORTHO05D005040 1.5e-15 86.7 126 46.8
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.9e-15 86.3 131 41.2
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 1.9e-15 86.3 135 42.2
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 2.5e-15 85.9 87 55.2
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 3.2e-15 85.5 121 48.8
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 3.2e-15 85.5 108 48.1
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 5.5e-15 84.7 120 43.3
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 9.4e-15 84.0 119 44.5
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 9.4e-15 84.0 125 41.6
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 1.2e-14 83.6 110 45.5
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 2.1e-14 82.8 137 40.9
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 3.6e-14 82.0 108 47.2
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 1.0e-13 80.5 74 58.1
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 1.0e-13 80.5 74 58.1
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.8e-13 79.7 132 37.9
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 2.3e-13 79.3 134 38.8
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 4.0e-13 78.6 114 40.4
PGSC0003DMG400026318 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.2e-13 78.2 126 42.9
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 8.8e-13 77.4 164 37.2
Nitab4.5_0004131g0070 Nicotiana tabacum HOM05D001798 ORTHO05D005040 1.2e-12 77.0 138 39.9
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-12 76.3 110 43.6
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 4.4e-12 75.1 77 54.5
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 4.8e-11 71.6 120 41.7
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 2.4e-10 69.3 113 37.2
ATR0580G067 Amborella trichopoda HOM05D001798 ORTHO05D005040 4.1e-10 68.6 113 40.7
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 4.1e-10 68.6 145 38.6
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 9.1e-10 67.4 98 38.8
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.6e-09 66.6 130 42.3
MELO3C013791.2 Cucumis melo HOM05D001798 ORTHO05D022392 2.0e-09 66.2 123 35.8
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 4.5e-09 65.1 118 37.3
SHI04313 Sapria himalayana HOM05D001798 ORTHO05D005040 7.7e-09 64.3 95 45.3
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 2.9e-08 62.4 139 40.3
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 1.2e-06 57.0 166 28.9
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 2.7e-06 55.8 156 31.4


User provided reference genes

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