Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1249500 Malus domestica HOM05D004757 ORTHO05D005743 7.2e-61 237.3 139 100.0
MD16G1255800 Malus domestica HOM05D004757 ORTHO05D005743 3.1e-56 221.9 145 91.7
Prupe.1G082700 Prunus persica HOM05D004757 ORTHO05D005743 3.6e-44 181.8 145 73.8
Cfa013398 Carpinus fangiana HOM05D004757 ORTHO05D005743 1.6e-39 166.4 147 61.9
Manes.06G022800 Manihot esculenta HOM05D004757 ORTHO05D005743 2.0e-39 166.0 146 63.7
Potri.006G166400 Populus trichocarpa HOM05D004757 ORTHO05D005743 1.3e-38 163.3 158 58.9
Thecc.09G175100 Theobroma cacao HOM05D004757 ORTHO05D005743 3.9e-38 161.8 147 72.1
ClCG06G013460 Citrullus lanatus HOM05D004757 ORTHO05D005743 6.6e-38 161.0 148 57.4
Gohir.A08G083700 Gossypium hirsutum HOM05D004757 ORTHO05D005743 6.6e-38 161.0 147 68.7
Atru.chr7.878 Acer truncatum HOM05D004757 ORTHO05D005743 1.9e-37 159.5 147 60.5
Duzib150G0244 Durio zibethinus HOM05D004757 ORTHO05D005743 2.5e-37 159.1 147 68.0
Cpa.g.sc95.44 Carica papaya HOM05D004757 ORTHO05D005743 3.3e-37 158.7 140 67.1
Gohir.D08G093400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 4.3e-37 158.3 147 68.0
FvH4_4g07900 Fragaria vesca HOM05D004757 ORTHO05D005743 5.6e-37 157.9 145 71.0
FAN17G1906 Fragaria x ananassa HOM05D004757 ORTHO05D005743 5.6e-37 157.9 140 72.9
Lj4g0011233 Lotus japonicus HOM05D004757 ORTHO05D005743 9.5e-37 157.1 145 60.0
Potri.018G090900 Populus trichocarpa HOM05D004757 ORTHO05D005743 9.5e-37 157.1 157 57.3
RcHm_v2.0_Chr4g0401201 Rosa chinensis HOM05D004757 ORTHO05D005743 2.8e-36 155.6 144 70.8
Sed0015670 Sechium edule HOM05D004757 ORTHO05D005743 2.8e-36 155.6 142 58.5
Duzib168G0914 Durio zibethinus HOM05D004757 ORTHO05D005743 3.6e-36 155.2 147 66.7
CiPaw.07G193700 Carya illinoinensis HOM05D004757 ORTHO05D005743 8.1e-36 154.1 146 61.0
CsaV3_1G031720 Cucumis sativus L. HOM05D004757 ORTHO05D005743 1.4e-35 153.3 148 55.4
Manes.14G157383 Manihot esculenta HOM05D004757 ORTHO05D005743 1.8e-35 152.9 147 58.5
Gorai.004G027500 Gossypium raimondii HOM05D004757 ORTHO05D005743 4.0e-35 151.8 147 70.1
TWI34G1741 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 4.0e-35 151.8 147 59.9
Glyma.17G062100 Glycine max HOM05D004757 ORTHO05D005743 5.2e-35 151.4 145 59.3
Sed0003925 Sechium edule HOM05D004757 ORTHO05D005743 5.2e-35 151.4 148 60.1
QL02p098330 Quercus lobata HOM05D004757 ORTHO05D005743 8.9e-35 150.6 179 56.4
Glyma.13G097500 Glycine max HOM05D004757 ORTHO05D005743 1.5e-34 149.8 145 58.6
Medtr4g127810 Medicago truncatula HOM05D004757 ORTHO05D005743 1.5e-34 149.8 150 56.7
Phvul.003G144000 Phaseolus vulgaris HOM05D004757 ORTHO05D005743 3.4e-34 148.7 140 57.9
Gohir.A08G019400 Gossypium hirsutum HOM05D004757 ORTHO05D005743 5.8e-34 147.9 147 69.4
TWI63G0987 Tripterygium wilfordii HOM05D004757 ORTHO05D005743 9.8e-34 147.1 147 59.2
Duzib170G0153 Durio zibethinus HOM05D004757 ORTHO05D005743 1.7e-33 146.4 147 64.6
Gohir.D08G030000 Gossypium hirsutum HOM05D004757 ORTHO05D005743 1.7e-33 146.4 147 67.3
TPR.G5446 Trifolium pratense HOM05D004757 ORTHO05D005743 2.2e-33 146.0 142 57.7
CANSAT11G1025 Cannabis sativa HOM05D004757 ORTHO05D005743 3.7e-33 145.2 143 69.2
FAN12G2780 Fragaria x ananassa HOM05D004757 ORTHO05D005743 4.9e-33 144.8 168 61.3
Haze_21940 Corylus avellana HOM05D004757 ORTHO05D005743 6.4e-33 144.4 129 60.5
BolC3t18202H Brassica oleracea HOM05D004757 ORTHO05D005743 1.9e-32 142.9 140 56.4
FAN07G0988 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.9e-32 142.9 168 60.7
FAN22G2108 Fragaria x ananassa HOM05D004757 ORTHO05D005743 1.9e-32 142.9 168 60.7
C03p59380 Brassica napus HOM05D004757 ORTHO05D005743 4.1e-32 141.7 140 56.4
Carub.0003s3315 Capsella rubella HOM05D004757 ORTHO05D005743 9.2e-32 140.6 143 57.3
Lalb_Chr13g0300141 Lupinus albus HOM05D004757 ORTHO05D005743 9.2e-32 140.6 143 53.1
AL3G53010 Arabidopsis lyrata HOM05D004757 ORTHO05D005743 2.1e-31 139.4 143 57.3
BcaB03g16684 Brassica carinata HOM05D004757 ORTHO05D005743 2.1e-31 139.4 140 59.3
BcaB07g31638 Brassica carinata HOM05D004757 ORTHO05D005743 2.1e-31 139.4 143 56.6
C07p03670 Brassica napus HOM05D004757 ORTHO05D005743 2.1e-31 139.4 140 55.7
BolC7t40764H Brassica oleracea HOM05D004757 ORTHO05D005743 2.1e-31 139.4 140 55.7
A07p01750 Brassica napus HOM05D004757 ORTHO05D005743 2.7e-31 139.0 143 56.6
Thhalv10022848m.g Eutrema salsugineum HOM05D004757 ORTHO05D005743 3.5e-31 138.7 140 67.9
Aa31LG8G16000 Aethionema arabicum HOM05D004757 ORTHO05D005743 4.6e-31 138.3 140 55.7
AT2G18910 Arabidopsis thaliana HOM05D004757 ORTHO05D005743 4.6e-31 138.3 143 56.6
MELO3C017451.2 Cucumis melo HOM05D004757 ORTHO05D005743 4.6e-31 138.3 130 54.6
THA.LOC104803488 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 7.8e-31 137.5 142 53.5
BcaC04g22879 Brassica carinata HOM05D004757 ORTHO05D005743 1.7e-30 136.3 143 57.3
Gorai.004G099000 Gossypium raimondii HOM05D004757 ORTHO05D005743 2.3e-30 136.0 128 67.2
BolC9t54334H Brassica oleracea HOM05D004757 ORTHO05D005743 5.1e-30 134.8 153 54.2
Psat4g012760 Pisum sativum HOM05D004757 ORTHO05D005743 5.1e-30 134.8 143 54.5
A09p12120 Brassica napus HOM05D004757 ORTHO05D005743 6.6e-30 134.4 144 56.2
BraA06t26238Z Brassica rapa HOM05D004757 ORTHO05D005743 6.6e-30 134.4 140 55.0
Hma1.2p1_0935F.1_g238550 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 6.6e-30 134.4 145 60.0
Hma1.2p1_2317F.1_g319740 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 6.6e-30 134.4 145 60.7
Sp3g32380 Schrenkiella parvula HOM05D004757 ORTHO05D005743 8.6e-30 134.0 143 58.0
TAR626G1857 Trochodendron aralioides HOM05D004757 ORTHO05D005743 8.6e-30 134.0 150 51.3
Lalb_Chr12g0199461 Lupinus albus HOM05D004757 ORTHO05D005743 1.1e-29 133.7 135 63.7
CARHR109470 Cardamine hirsuta HOM05D004757 ORTHO05D005743 2.5e-29 132.5 143 54.5
Ca_21237_v3 Cicer arietinum L. HOM05D004757 ORTHO05D005743 4.3e-29 131.7 121 58.7
A06p33080 Brassica napus HOM05D004757 ORTHO05D005743 5.6e-29 131.3 137 53.3
BraA09t36856Z Brassica rapa HOM05D004757 ORTHO05D005743 5.6e-29 131.3 144 56.2
CiPaw.08G035200 Carya illinoinensis HOM05D004757 ORTHO05D005743 5.6e-29 131.3 144 63.2
PGR044G0017 Punica granatum HOM05D004757 ORTHO05D005743 7.3e-29 131.0 134 54.5
Ciclev10009829m.g Citrus clementina HOM05D004757 ORTHO05D005743 1.6e-28 129.8 129 64.3
Peaxi162Scf01558g00012 Petunia axillaris HOM05D004757 ORTHO05D005743 1.6e-28 129.8 150 48.7
C09p14310 Brassica napus HOM05D004757 ORTHO05D005743 2.8e-28 129.0 153 53.6
Actinidia19844 Actinidia chinensis HOM05D004757 ORTHO05D005743 4.7e-28 128.3 142 52.1
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 1.1e-27 127.1 134 56.7
PGR142G2781 Punica granatum HOM05D004757 ORTHO05D005743 1.1e-27 127.1 151 62.3
VMungo1215G0044 Vigna mungo HOM05D004757 ORTHO05D005743 1.4e-27 126.7 122 55.7
Actinidia01305 Actinidia chinensis HOM05D004757 ORTHO05D005743 1.8e-27 126.3 131 51.9
Eucgr.C00145 Eucalyptus grandis HOM05D004757 ORTHO05D005743 1.8e-27 126.3 121 66.1
THA.LOC104803943 Tarenaya hassleriana HOM05D004757 ORTHO05D005743 1.8e-27 126.3 143 51.0
Hma1.2p1_1303F.1_g274440 Hydrangea macrophylla HOM05D004757 ORTHO05D005743 6.8e-27 124.4 157 53.5
Dinv19553 Davidia involucrata HOM05D004757 ORTHO05D005743 8.9e-27 124.0 127 59.1
BcaC06g36489 Brassica carinata HOM05D004757 ORTHO05D005743 1.5e-26 123.2 120 56.7
ECA240G0762 Erigeron canadensis HOM05D004757 ORTHO05D005743 9.9e-26 120.6 133 51.9
PSO170G5353 Papaver somniferum HOM05D004757 ORTHO05D005743 9.9e-26 120.6 181 40.3
PSO063G6152 Papaver somniferum HOM05D004757 ORTHO05D005743 1.3e-25 120.2 181 40.3
ECA234G2687 Erigeron canadensis HOM05D004757 ORTHO05D005743 1.7e-25 119.8 137 48.9
Sabra06G0128000 Salix brachista HOM05D004757 ORTHO05D005743 1.7e-25 119.8 171 49.7
GSVIVG01035530001 Vitis vinifera HOM05D004757 ORTHO05D005743 2.9e-25 119.0 146 49.3
Nitab4.5_0010128g0010 Nicotiana tabacum HOM05D004757 ORTHO05D005743 1.4e-24 116.7 151 41.7
HanXRQChr09g0244371 Helianthus annuus HOM05D004757 ORTHO05D005743 7.1e-24 114.4 127 49.6
CDE02G3269 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 9.2e-24 114.0 132 54.5
Ah.14g083740 Amaranthus hybridus HOM05D004757 ORTHO05D005743 1.6e-23 113.2 142 47.2
CDE04G2108 Ceratophyllum demersum HOM05D004757 ORTHO05D005743 1.6e-23 113.2 133 47.4
Nn8g40409 Nelumbo nucifera HOM05D004757 ORTHO05D005743 1.6e-23 113.2 170 41.2
unitig_21.g20652 Utricularia gibba HOM05D004757 ORTHO05D005743 2.1e-23 112.8 141 44.7
Lsat_1_v5_gn_5_85101 Lactuca sativa HOM05D004757 ORTHO05D005743 2.7e-23 112.5 134 46.3
Sabra18G0078100 Salix brachista HOM05D004757 ORTHO05D005743 3.5e-23 112.1 168 51.2
Sc14g0001290 Simmondsia chinensis HOM05D004757 ORTHO05D005743 3.5e-23 112.1 118 50.0
Rhsim01G0003200 Rhododendron simsii HOM05D004757 ORTHO05D005743 4.6e-23 111.7 129 62.8
MSTRG.19719 Avicennia marina HOM05D004757 ORTHO05D005743 7.8e-23 110.9 141 44.7
Cc06_g12990 Coffea canephora HOM05D004757 ORTHO05D005743 7.8e-23 110.9 159 40.9
Sc08g0005260 Simmondsia chinensis HOM05D004757 ORTHO05D005743 7.8e-23 110.9 133 48.9
HanXRQChr09g0254201 Helianthus annuus HOM05D004757 ORTHO05D005743 1.3e-22 110.2 123 51.2
Lsat_1_v5_gn_7_54961 Lactuca sativa HOM05D004757 ORTHO05D005743 3.0e-22 109.0 130 47.7
Hund09034 Selenicereus undatus HOM05D004757 ORTHO05D005743 3.0e-22 109.0 141 43.3
TAR636G1688 Trochodendron aralioides HOM05D004757 ORTHO05D005743 3.0e-22 109.0 127 58.3
Oeu025209.1 Olea europaea HOM05D004757 ORTHO05D005743 6.6e-22 107.8 125 48.8
SalBow6G1691 Salvia bowleyana HOM05D004757 ORTHO05D005743 6.6e-22 107.8 141 54.6
EL10Ac8g18296 Beta vulgaris HOM05D004757 ORTHO05D005743 8.6e-22 107.5 144 42.4
Solyc07g006960.3 Solanum lycopersicum HOM05D004757 ORTHO05D005743 1.1e-21 107.1 133 45.1
Sopen07g003050 Solanum pennellii HOM05D004757 ORTHO05D005743 1.1e-21 107.1 141 49.6
Aqoxy7G02958 Aquilegia oxysepala HOM05D004757 ORTHO05D005743 1.9e-21 106.3 135 52.6
CSS0015413 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 1.2e-20 103.6 117 62.4
Migut.J01503 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.1e-20 102.8 142 47.9
MBI16_g31788_MAGBIO Magnolia biondii HOM05D004757 ORTHO05D005743 2.1e-20 102.8 159 42.1
Migut.K00229 Erythranthe guttata HOM05D004757 ORTHO05D005743 2.8e-20 102.4 140 45.0
HanXRQChr10g0308501 Helianthus annuus HOM05D004757 ORTHO05D005743 3.6e-20 102.1 141 49.6
ATR0580G064 Amborella trichopoda HOM05D004757 ORTHO05D005743 1.4e-19 100.1 130 44.6
DCAR_020127 Daucus carota HOM05D004757 ORTHO05D005743 1.8e-19 99.8 132 43.2
ECA236G5014 Erigeron canadensis HOM05D004757 ORTHO05D005743 3.1e-19 99.0 131 44.3
Oeu025694.3 Olea europaea HOM05D004757 ORTHO05D005743 1.2e-18 97.1 127 43.3
TAR383G0800 Trochodendron aralioides HOM05D004757 ORTHO05D005743 2.6e-18 95.9 139 43.2
Nn2g12725 Nelumbo nucifera HOM05D004757 ORTHO05D005743 3.4e-18 95.5 148 39.2
PGSC0003DMG400018757 Solanum tuberosum HOM05D004757 ORTHO05D005743 5.8e-18 94.7 125 44.8
CSS0012735 Camellia sinensis var. sinensis HOM05D004757 ORTHO05D005743 7.6e-18 94.4 128 41.4
CAN.G1464.4 Capsicum annuum HOM05D004757 ORTHO05D005743 7.6e-18 94.4 115 47.0
HanXRQChr05g0142021 Helianthus annuus HOM05D004757 ORTHO05D005743 1.7e-17 93.2 125 41.6
vmacro13132 Vaccinium macrocarpon HOM05D004757 ORTHO05D005743 2.9e-17 92.4 166 39.2
Eucgr.L02640 Eucalyptus grandis HOM05D004757 ORTHO05D005743 3.8e-17 92.0 120 45.0
MSTRG.6239 Avicennia marina HOM05D004757 ORTHO05D005743 8.4e-17 90.9 126 57.9
HPP92_015369 Vanilla planifolia HOM05D004757 ORTHO05D005743 4.2e-16 88.6 150 38.7
Lsat_1_v5_gn_8_68041 Lactuca sativa HOM05D004757 ORTHO05D005743 9.3e-16 87.4 113 42.5
SGA_v2.0_scaffold66G22433 Striga asiatica HOM05D004757 ORTHO05D005743 9.3e-16 87.4 112 45.5
Os02g0461900 Oryza sativa ssp. japonica HOM05D004757 ORTHO05D005743 3.9e-14 82.0 176 39.8
Peaxi162Scf00200g00183 Petunia axillaris HOM05D004757 ORTHO05D005743 3.3e-13 79.0 103 48.5
Ah.09g229970 Amaranthus hybridus HOM05D004757 ORTHO05D005743 4.3e-13 78.6 145 37.9
Peaxi162Scf00200g01819 Petunia axillaris HOM05D004757 ORTHO05D005743 4.3e-13 78.6 66 56.1
ATR0030G045 Amborella trichopoda HOM05D004757 ORTHO05D005743 5.6e-13 78.2 123 36.6
Zm00001eb236700 Zea mays HOM05D004757 ORTHO05D005743 5.6e-13 78.2 174 32.8
Zm00001eb420280 Zea mays HOM05D004757 ORTHO05D005743 7.3e-13 77.8 149 39.6
Dinv41223 Davidia involucrata HOM05D004757 ORTHO05D005743 1.6e-12 76.6 101 57.4
Zm00001eb087060 Zea mays HOM05D004757 ORTHO05D005743 6.2e-12 74.7 58 56.9
Zm00001eb180540 Zea mays HOM05D004757 ORTHO05D005743 1.1e-11 73.9 183 33.9
AUR62043442 Chenopodium quinoa HOM05D000216 ORTHO05D003518 7.1e-08 61.2 40 57.5
Peaxi162Scf00627g00011 Petunia axillaris HOM05D004757 ORTHO05D005743 1.6e-07 60.1 29 82.8
Peaxi162Scf00200g00182 Petunia axillaris HOM05D004757 ORTHO05D005743 3.9e-06 55.5 48 54.2


User provided reference genes

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