Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1245800 Malus domestica HOM05D000476 ORTHO05D004987 2.3e-90 335.5 166 100.0
MD00G1185400 Malus domestica HOM05D000476 ORTHO05D004987 5.4e-63 244.6 165 75.8
Prupe.1G079100 Prunus persica HOM05D000476 ORTHO05D004987 9.6e-60 233.8 135 84.4
Thecc.09G181300 Theobroma cacao HOM05D000476 ORTHO05D004987 2.6e-57 225.7 135 83.7
Cfa013432 Carpinus fangiana HOM05D000476 ORTHO05D004987 8.4e-56 220.7 165 69.1
Haze_21986 Corylus avellana HOM05D000476 ORTHO05D004987 1.2e-54 216.9 159 71.1
Haze_21989 Corylus avellana HOM05D000476 ORTHO05D004987 1.2e-54 216.9 159 71.1
Sabra06G0058300 Salix brachista HOM05D000476 ORTHO05D004987 4.6e-54 214.9 135 81.5
Potri.006G077000 Populus trichocarpa HOM05D000476 ORTHO05D004987 6.0e-54 214.5 135 81.5
Duzib150G0836 Durio zibethinus HOM05D000476 ORTHO05D004987 2.5e-52 209.1 135 77.0
QL11p004794 Quercus lobata HOM05D000476 ORTHO05D004987 4.3e-52 208.4 134 79.1
COL.COLO4_29314 Corchorus olitorius HOM05D000476 ORTHO05D004987 2.8e-51 205.7 135 77.0
Gohir.A13G212500 Gossypium hirsutum HOM05D000476 ORTHO05D004987 2.8e-51 205.7 135 74.8
Atru.chr7.818 Acer truncatum HOM05D000476 ORTHO05D004987 3.6e-51 205.3 137 78.8
Manes.14G158839 Manihot esculenta HOM05D000476 ORTHO05D004987 4.8e-51 204.9 135 74.1
Gorai.013G246900 Gossypium raimondii HOM05D000476 ORTHO05D004987 1.1e-50 203.8 135 74.8
CAN.G854.13 Capsicum annuum HOM05D000476 ORTHO05D004987 1.4e-50 203.4 135 74.8
Gohir.D13G216600 Gossypium hirsutum HOM05D000476 ORTHO05D004987 9.0e-50 200.7 135 74.1
ClCG11G011920 Citrullus lanatus HOM05D000476 ORTHO05D004987 2.6e-49 199.1 135 76.3
Nn8g40976 Nelumbo nucifera HOM05D000476 ORTHO05D004987 5.8e-49 198.0 135 73.3
GSVIVG01010901001 Vitis vinifera HOM05D000476 ORTHO05D004987 5.8e-49 198.0 135 74.8
Dinv25413 Davidia involucrata HOM05D000476 ORTHO05D004987 3.8e-48 195.3 134 73.9
Dinv25416 Davidia involucrata HOM05D000476 ORTHO05D004987 3.8e-48 195.3 134 73.9
FvH4_4g07580 Fragaria vesca HOM05D000476 ORTHO05D004987 3.8e-48 195.3 144 73.6
FAN12G0029 Fragaria x ananassa HOM05D000476 ORTHO05D004987 3.8e-48 195.3 144 73.6
Cc06_g21650 Coffea canephora HOM05D000476 ORTHO05D004987 4.9e-48 194.9 137 73.7
PGSC0003DMG400006129 Solanum tuberosum HOM05D000476 ORTHO05D004987 1.1e-47 193.7 136 72.1
FAN22G0745 Fragaria x ananassa HOM05D000476 ORTHO05D004987 1.9e-47 193.0 144 72.9
Solyc07g047830.3 Solanum lycopersicum HOM05D000476 ORTHO05D004987 4.2e-47 191.8 140 70.7
Sopen07g024270 Solanum pennellii HOM05D000476 ORTHO05D004987 4.2e-47 191.8 140 70.7
MELO3C003998.2 Cucumis melo HOM05D000476 ORTHO05D004987 5.4e-47 191.4 136 75.0
Nitab4.5_0009877g0040 Nicotiana tabacum HOM05D000476 ORTHO05D004987 7.1e-47 191.0 137 70.8
TWI63G1758 Tripterygium wilfordii HOM05D000476 ORTHO05D004987 9.3e-47 190.7 135 72.6
FAN17G2277 Fragaria x ananassa HOM05D000476 ORTHO05D004987 1.2e-46 190.3 144 72.2
Aqoxy7G02736 Aquilegia oxysepala HOM05D000476 ORTHO05D004987 1.6e-46 189.9 137 68.6
Peaxi162Scf00776g00228 Petunia axillaris HOM05D000476 ORTHO05D004987 2.7e-46 189.1 136 67.6
CsaV3_2G008590 Cucumis sativus L. HOM05D000476 ORTHO05D004987 3.5e-46 188.7 136 73.5
Sed0006240 Sechium edule HOM05D000476 ORTHO05D004987 3.5e-46 188.7 130 75.4
Nitab4.5_0000441g0050 Nicotiana tabacum HOM05D000476 ORTHO05D004987 4.6e-46 188.3 137 68.6
SalBow5G1589 Salvia bowleyana HOM05D000476 ORTHO05D004987 6.0e-46 188.0 136 71.3
CiPaw.08G033700 Carya illinoinensis HOM05D000476 ORTHO05D004987 7.8e-46 187.6 134 74.6
Ciclev10007457m.g Citrus clementina HOM05D000476 ORTHO05D004987 1.7e-45 186.4 188 56.4
Lj6g0013002 Lotus japonicus HOM05D000476 ORTHO05D004987 3.9e-45 185.3 137 68.6
Rhsim01G0120300 Rhododendron simsii HOM05D000476 ORTHO05D004987 5.1e-45 184.9 138 68.1
Cpa.g.sc95.27 Carica papaya HOM05D000476 ORTHO05D004987 6.6e-45 184.5 136 72.8
DCAR_019822 Daucus carota HOM05D000476 ORTHO05D004987 9.6e-44 180.6 135 70.4
Oeu057498.1 Olea europaea HOM05D000476 ORTHO05D004987 9.6e-44 180.6 136 71.3
CSS0030263 Camellia sinensis var. sinensis HOM05D000476 ORTHO05D004987 2.4e-42 176.0 138 71.7
CANSAT11G0766 Cannabis sativa HOM05D000476 ORTHO05D004987 2.4e-42 176.0 138 71.0
Glyma.13G099500 Glycine max HOM05D000476 ORTHO05D004987 5.3e-42 174.9 136 66.9
RcHm_v2.0_Chr4g0400181 Rosa chinensis HOM05D000476 ORTHO05D004987 6.9e-42 174.5 204 52.9
arahy.Tifrunner.gnm1.ann1.4E3UXJ Arachis hypogaea HOM05D000476 ORTHO05D004987 9.0e-42 174.1 137 68.6
Phvul.009G237700 Phaseolus vulgaris HOM05D000476 ORTHO05D004987 9.0e-42 174.1 139 67.6
VMungo1215G2438 Vigna mungo HOM05D000476 ORTHO05D004987 1.2e-41 173.7 136 67.6
arahy.Tifrunner.gnm1.ann1.U5BQ4B Arachis hypogaea HOM05D000476 ORTHO05D004987 2.0e-41 172.9 137 67.9
Glyma.15G164100 Glycine max HOM05D000476 ORTHO05D004987 2.6e-41 172.6 139 66.9
MSTRG.10451 Avicennia marina HOM05D000476 ORTHO05D004987 4.5e-41 171.8 136 65.4
vmacro20834 Vaccinium macrocarpon HOM05D000476 ORTHO05D004987 7.6e-41 171.0 139 64.7
Glyma.17G060600 Glycine max HOM05D000476 ORTHO05D004987 1.3e-40 170.2 135 65.2
VMungo1309G0449 Vigna mungo HOM05D000476 ORTHO05D004987 4.9e-40 168.3 139 66.2
Hund26320 Selenicereus undatus HOM05D000476 ORTHO05D004987 6.4e-40 167.9 137 64.2
Ah.14g083660 Amaranthus hybridus HOM05D000476 ORTHO05D004987 2.4e-39 166.0 138 65.2
Lalb_Chr07g0180601 Lupinus albus HOM05D000476 ORTHO05D004987 5.4e-39 164.9 135 65.9
Lj5A679T31 Lonicera japonica HOM05D000476 ORTHO05D004987 9.3e-39 164.1 132 68.2
TAR625G0610 Trochodendron aralioides HOM05D000476 ORTHO05D004987 1.2e-38 163.7 166 55.4
Phvul.003G142800 Phaseolus vulgaris HOM05D000476 ORTHO05D004987 2.7e-38 162.5 136 64.0
arahy.Tifrunner.gnm1.ann1.94TNN4 Arachis hypogaea HOM05D000476 ORTHO05D004987 3.5e-38 162.2 136 64.7
arahy.Tifrunner.gnm1.ann1.QRCU7C Arachis hypogaea HOM05D000476 ORTHO05D004987 3.5e-38 162.2 136 64.7
Ah.09g230180 Amaranthus hybridus HOM05D000476 ORTHO05D004987 3.0e-37 159.1 137 63.5
Sc14g0001360 Simmondsia chinensis HOM05D000476 ORTHO05D004987 1.9e-36 156.4 136 63.2
Lalb_Chr18g0052521 Lupinus albus HOM05D000476 ORTHO05D004987 2.5e-36 156.0 150 58.0
Glyma.09G058000 Glycine max HOM05D000476 ORTHO05D004987 7.4e-36 154.5 138 62.3
Lalb_Chr20g0116291 Lupinus albus HOM05D000476 ORTHO05D004987 1.3e-35 153.7 149 59.7
PSO079G0004 Papaver somniferum HOM05D000476 ORTHO05D004987 1.3e-35 153.7 135 60.0
PSO423G0107 Papaver somniferum HOM05D000476 ORTHO05D004987 1.3e-35 153.7 135 60.0
Migut.L01895 Erythranthe guttata HOM05D000476 ORTHO05D004987 2.8e-35 152.5 138 63.8
AUR62033245 Chenopodium quinoa HOM05D000476 ORTHO05D004987 8.1e-35 151.0 136 64.0
AUR62021330 Chenopodium quinoa HOM05D000476 ORTHO05D004987 1.4e-34 150.2 136 64.0
Ca_02043_v3 Cicer arietinum L. HOM05D000476 ORTHO05D004987 9.0e-34 147.5 152 55.3
Ca_02047_v3 Cicer arietinum L. HOM05D000476 ORTHO05D004987 9.0e-34 147.5 152 55.3
Medtr4g127620 Medicago truncatula HOM05D000476 ORTHO05D004987 1.5e-33 146.7 134 61.9
Eucgr.C02248 Eucalyptus grandis HOM05D000476 ORTHO05D004987 1.7e-32 143.3 189 46.0
Psat1g145880 Pisum sativum HOM05D000476 ORTHO05D004987 8.4e-32 141.0 170 48.8
ECA234G2540 Erigeron canadensis HOM05D000476 ORTHO05D004987 2.5e-31 139.4 139 60.4
Psat0ss2585g0040 Pisum sativum HOM05D000476 ORTHO05D004987 9.3e-31 137.5 138 57.2
TPR.G5365 Trifolium pratense HOM05D000476 ORTHO05D004987 1.2e-30 137.1 135 57.0
TPR.G9019 Trifolium pratense HOM05D000476 ORTHO05D004987 2.1e-30 136.3 136 56.6
Lsat_1_v5_gn_5_82221 Lactuca sativa HOM05D000476 ORTHO05D004987 6.0e-30 134.8 143 55.2
Actinidia29959 Actinidia chinensis HOM05D000476 ORTHO05D004987 1.3e-29 133.7 137 55.5
unitig_578.g16067 Utricularia gibba HOM05D000476 ORTHO05D004987 1.3e-29 133.7 135 56.3
Ca_21246_v3 Cicer arietinum L. HOM05D000476 ORTHO05D004987 1.8e-29 133.3 129 58.1
Lj4g0015498 Lotus japonicus HOM05D000476 ORTHO05D004987 5.1e-29 131.7 136 55.1
HanXRQChr10g0309241 Helianthus annuus HOM05D000476 ORTHO05D004987 8.7e-29 131.0 149 53.7
EL10Ac8g18316 Beta vulgaris HOM05D000476 ORTHO05D004987 3.3e-28 129.0 106 67.0
HPP92_003060 Vanilla planifolia HOM05D000476 ORTHO05D004987 4.8e-27 125.2 131 54.2
PGR044G2442 Punica granatum HOM05D000476 ORTHO05D004987 3.1e-26 122.5 136 53.7
MBI13_g31545_MAGBIO Magnolia biondii HOM05D000476 ORTHO05D004987 1.5e-25 120.2 135 51.9
CiPaw.07G195200 Carya illinoinensis HOM05D000476 ORTHO05D004987 1.4e-23 113.6 135 50.4
THA.LOC104814668 Tarenaya hassleriana HOM05D000476 ORTHO05D004987 5.5e-23 111.7 142 51.4
Medtr2g036920 Medicago truncatula HOM05D000476 ORTHO05D004987 1.9e-20 103.2 196 38.3
unitig_8.g4936 Utricularia gibba HOM05D000476 ORTHO05D004987 5.7e-20 101.7 135 46.7
SGA_v2.0_scaffold41G15860 Striga asiatica HOM05D000476 ORTHO05D004987 2.8e-19 99.4 141 48.9
Sp7g27980 Schrenkiella parvula HOM05D000476 ORTHO05D004987 4.8e-19 98.6 138 47.8
Os08g0519700 Oryza sativa ssp. japonica HOM05D000476 ORTHO05D004987 4.1e-18 95.5 166 38.6
Thhalv10024537m.g Eutrema salsugineum HOM05D000476 ORTHO05D004987 5.3e-18 95.1 136 46.3
AL7G22070 Arabidopsis lyrata HOM05D000476 ORTHO05D004987 4.5e-17 92.0 140 47.1
BcaNung04413 Brassica carinata HOM05D000476 ORTHO05D004987 1.0e-16 90.9 137 44.5
Zm00001eb174640 Zea mays HOM05D000476 ORTHO05D004987 1.3e-16 90.5 166 38.6
A07p01640 Brassica napus HOM05D000476 ORTHO05D004987 1.7e-16 90.1 168 41.7
BraA07t27966Z Brassica rapa HOM05D000476 ORTHO05D004987 1.7e-16 90.1 168 41.7
ECA240G1670 Erigeron canadensis HOM05D000476 ORTHO05D004987 1.7e-16 90.1 79 60.8
AT4G30130 Arabidopsis thaliana HOM05D000476 ORTHO05D004987 2.9e-16 89.4 139 46.0
Thhalv10022561m.g Eutrema salsugineum HOM05D000476 ORTHO05D004987 3.8e-16 89.0 159 47.2
Carub.0007s1048 Capsella rubella HOM05D000476 ORTHO05D004987 5.0e-16 88.6 138 44.9
Sp3g32490 Schrenkiella parvula HOM05D000476 ORTHO05D004987 8.5e-16 87.8 160 45.6
Zm00001eb035710 Zea mays HOM05D000476 ORTHO05D004987 5.5e-15 85.1 137 39.4
BcaC09g51792 Brassica carinata HOM05D000476 ORTHO05D004987 7.2e-15 84.7 138 44.2
C01p08970 Brassica napus HOM05D000476 ORTHO05D004987 7.2e-15 84.7 138 44.2
BolC7t40739H Brassica oleracea HOM05D000476 ORTHO05D004987 1.2e-14 84.0 169 43.2
A01p08010 Brassica napus HOM05D000476 ORTHO05D004987 2.1e-14 83.2 136 41.2
BolC1t00887H Brassica oleracea HOM05D000476 ORTHO05D004987 2.1e-14 83.2 131 43.5
BraA01t00746Z Brassica rapa HOM05D000476 ORTHO05D004987 2.1e-14 83.2 136 41.2
BcaC06g36519 Brassica carinata HOM05D000476 ORTHO05D004987 2.7e-14 82.8 169 42.6
C07p03400 Brassica napus HOM05D000476 ORTHO05D004987 2.7e-14 82.8 169 42.6
Zm00001eb215720 Zea mays HOM05D000476 ORTHO05D030734 3.6e-14 82.4 137 38.7
CDE05G1192 Ceratophyllum demersum HOM05D007715 ORTHO05D004987 1.0e-13 80.9 191 35.6
BcaB03g16802 Brassica carinata HOM05D000476 ORTHO05D004987 1.4e-13 80.5 123 48.8
THA.LOC104819969 Tarenaya hassleriana HOM05D000476 ORTHO05D004987 1.8e-13 80.1 126 46.0
C09p14450 Brassica napus HOM05D000476 ORTHO05D004987 3.9e-13 79.0 169 42.0
unitig_746.g26790 Utricularia gibba HOM05D000476 ORTHO05D004987 5.1e-13 78.6 137 40.9
BcaC04g22868 Brassica carinata HOM05D000476 ORTHO05D004987 8.8e-13 77.8 170 41.8
BolC9t54348H Brassica oleracea HOM05D000476 ORTHO05D004987 8.8e-13 77.8 170 41.8
TAR506G0004 Trochodendron aralioides HOM05D000476 ORTHO05D004987 1.1e-12 77.4 44 79.5
Aa31LG8G16150 Aethionema arabicum HOM05D000476 ORTHO05D004987 2.0e-12 76.6 154 40.9
AL3G52830 Arabidopsis lyrata HOM05D000476 ORTHO05D004987 4.3e-12 75.5 166 42.8
AT2G19090 Arabidopsis thaliana HOM05D000476 ORTHO05D004987 1.3e-11 73.9 160 43.1
Actinidia28216 Actinidia chinensis HOM05D000476 ORTHO05D004987 3.7e-11 72.4 48 75.0
Carub.0003s3333 Capsella rubella HOM05D000476 ORTHO05D004987 4.8e-11 72.0 159 42.8
HPP92_019928 Vanilla planifolia HOM05D000476 ORTHO05D004987 4.1e-10 68.9 135 33.3
BraA09t36866Z Brassica rapa HOM05D000476 ORTHO05D004987 2.0e-09 66.6 169 38.5
ATR0626G137 Amborella trichopoda HOM05D000476 ORTHO05D004987 3.4e-09 65.9 101 48.5
Nn2g12746 Nelumbo nucifera HOM05D000476 ORTHO05D004987 1.4e-07 60.5 44 65.9
CARHR109610 Cardamine hirsuta HOM05D000476 ORTHO05D004987 6.1e-06 55.1 120 42.5


User provided reference genes

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