Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1245100 Malus domestica HOM05D000751 ORTHO05D005618 9.1e-34 146.4 75 100.0
Prupe.1G079600 Prunus persica HOM05D000751 ORTHO05D005618 2.6e-12 75.1 105 45.7
MD13G1251200 Malus domestica HOM05D000751 ORTHO05D005618 3.4e-12 74.7 106 47.2
FAN07G1720 Fragaria x ananassa HOM05D000751 ORTHO05D005618 1.4e-10 69.3 107 42.1
Lsat_1_v5_gn_7_56501 Lactuca sativa HOM05D000751 ORTHO05D005618 1.4e-10 69.3 83 48.2
FvH4_4g07640 Fragaria vesca HOM05D000751 ORTHO05D005618 2.4e-10 68.6 106 41.5
FAN12G3496 Fragaria x ananassa HOM05D000751 ORTHO05D005618 2.4e-10 68.6 106 41.5
FAN17G2112 Fragaria x ananassa HOM05D000751 ORTHO05D005618 4.1e-10 67.8 107 41.1
RcHm_v2.0_Chr4g0400251 Rosa chinensis HOM05D000751 ORTHO05D005618 1.6e-09 65.9 106 40.6
CAN.G101.3 Capsicum annuum HOM05D000751 ORTHO05D005618 2.0e-09 65.5 73 50.7
Eucgr.A01411 Eucalyptus grandis HOM05D000751 ORTHO05D005618 2.2e-08 62.0 104 38.5
Cc06_g22130 Coffea canephora HOM05D000751 ORTHO05D005618 2.9e-08 61.6 150 32.7
GSVIVG01010908001 Vitis vinifera HOM05D000751 ORTHO05D005618 6.5e-08 60.5 43 67.4
CANSAT11G2085 Cannabis sativa HOM05D000751 ORTHO05D005618 1.1e-07 59.7 104 38.5
Cc06_g21120 Coffea canephora HOM05D000751 ORTHO05D005618 1.1e-07 59.7 104 38.5
CSS0048015 Camellia sinensis var. sinensis HOM05D000751 ORTHO05D005618 1.5e-07 59.3 43 65.1
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 1.5e-07 59.3 94 41.5
TPR.G9024 Trifolium pratense HOM05D000751 ORTHO05D005618 1.5e-07 59.3 43 62.8
Ciclev10030781m.g Citrus clementina HOM05D000751 ORTHO05D005618 1.9e-07 58.9 38 76.3
HPP92_003076 Vanilla planifolia HOM05D000751 ORTHO05D005618 1.9e-07 58.9 66 47.0
MELO3C017440.2 Cucumis melo HOM05D000751 ORTHO05D005618 2.5e-07 58.5 104 38.5
CsaV3_1G031770 Cucumis sativus L. HOM05D000751 ORTHO05D005618 2.5e-07 58.5 104 38.5
Glyma.09G057700 Glycine max HOM05D000751 ORTHO05D005618 2.5e-07 58.5 43 60.5
Atru.chr11.2504 Acer truncatum HOM05D000751 ORTHO05D005618 3.2e-07 58.2 42 64.3
Actinidia06357 Actinidia chinensis HOM05D000751 ORTHO05D005618 3.2e-07 58.2 43 62.8
Aqoxy2G02196 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.2e-07 58.2 43 65.1
Aqoxy2G02322 Aquilegia oxysepala HOM05D000751 ORTHO05D005618 3.2e-07 58.2 43 65.1
Nitab4.5_0008918g0010 Nicotiana tabacum HOM05D000751 ORTHO05D005618 3.2e-07 58.2 101 38.6
PSO017G1776 Papaver somniferum HOM05D000751 ORTHO05D005618 3.2e-07 58.2 43 62.8
PSO478G0715 Papaver somniferum HOM05D000751 ORTHO05D005618 3.2e-07 58.2 43 62.8
TAR636G3589 Trochodendron aralioides HOM05D000751 ORTHO05D005618 3.2e-07 58.2 43 65.1
vmacro08789 Vaccinium macrocarpon HOM05D000751 ORTHO05D005618 3.2e-07 58.2 43 62.8
ClCG06G013510 Citrullus lanatus HOM05D000751 ORTHO05D005618 4.2e-07 57.8 43 65.1
Hma1.2p1_0207F.1_g087810 Hydrangea macrophylla HOM05D000751 ORTHO05D005618 4.2e-07 57.8 104 36.5
Lalb_Chr02g0148081 Lupinus albus HOM05D000751 ORTHO05D005618 4.2e-07 57.8 104 37.5
Sed0012322 Sechium edule HOM05D000751 ORTHO05D005618 4.2e-07 57.8 43 65.1
VMungo1309G0231 Vigna mungo HOM05D000751 ORTHO05D005618 4.2e-07 57.8 43 60.5
arahy.Tifrunner.gnm1.ann1.EK4LKE Arachis hypogaea HOM05D000751 ORTHO05D005618 5.5e-07 57.4 99 39.4
Cfa016755 Carpinus fangiana HOM05D000751 ORTHO05D005618 7.2e-07 57.0 102 38.2
Lj6g0015551 Lotus japonicus HOM05D000751 ORTHO05D005618 7.2e-07 57.0 43 60.5
Peaxi162Scf00324g00731 Petunia axillaris HOM05D000751 ORTHO05D005618 7.2e-07 57.0 101 37.6
Phvul.009G238100 Phaseolus vulgaris HOM05D000751 ORTHO05D005618 7.2e-07 57.0 43 60.5
CAN.G266.4 Capsicum annuum HOM05D000751 ORTHO05D005618 9.4e-07 56.6 37 67.6
ECA240G3678 Erigeron canadensis HOM05D000751 ORTHO05D005618 9.4e-07 56.6 104 35.6
HPP92_028565 Vanilla planifolia HOM05D000751 ORTHO05D005618 9.4e-07 56.6 65 46.2
CDE02G3188 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 1.2e-06 56.2 43 60.5
arahy.Tifrunner.gnm1.ann1.4Y102Q Arachis hypogaea HOM05D000751 ORTHO05D005618 1.6e-06 55.8 57 54.4
arahy.Tifrunner.gnm1.ann1.QPM7FK Arachis hypogaea HOM05D000751 ORTHO05D005618 1.6e-06 55.8 43 62.8
Manes.17G002500 Manihot esculenta HOM05D000751 ORTHO05D005618 1.6e-06 55.8 99 37.4
CiPaw.14G110300 Carya illinoinensis HOM05D000751 ORTHO05D005618 2.1e-06 55.5 43 62.8
CDE06G1960 Ceratophyllum demersum HOM05D000751 ORTHO05D005618 2.1e-06 55.5 43 60.5
Cc06_g21130 Coffea canephora HOM05D000751 ORTHO05D005618 2.7e-06 55.1 83 39.8
Cc10_g11360 Coffea canephora HOM05D000751 ORTHO05D005618 2.7e-06 55.1 83 39.8
DCAR_007397 Daucus carota HOM05D000751 ORTHO05D005618 2.7e-06 55.1 43 60.5
Nitab4.5_0000074g0030 Nicotiana tabacum HOM05D000751 ORTHO05D005618 2.7e-06 55.1 101 37.6
SalBow1G4534 Salvia bowleyana HOM05D000751 ORTHO05D005618 2.7e-06 55.1 131 32.8
ATR0626G151 Amborella trichopoda HOM05D000751 ORTHO05D005618 3.6e-06 54.7 40 65.0
Nn8g40996 Nelumbo nucifera HOM05D000751 ORTHO05D005618 3.6e-06 54.7 104 35.6
THA.LOC104813512 Tarenaya hassleriana HOM05D000751 ORTHO05D005618 3.6e-06 54.7 99 38.4
Carub.0001s1742 Capsella rubella HOM05D000751 ORTHO05D005618 4.7e-06 54.3 105 36.2
Gohir.D05G003900 Gossypium hirsutum HOM05D000751 ORTHO05D005618 4.7e-06 54.3 100 39.0
Zm00001eb406370 Zea mays HOM05D000751 ORTHO05D005618 4.7e-06 54.3 100 36.0
Gohir.A05G003500 Gossypium hirsutum HOM05D000751 ORTHO05D005618 8.0e-06 53.5 39 69.2
Gorai.009G003500 Gossypium raimondii HOM05D000751 ORTHO05D005618 8.0e-06 53.5 100 39.0
SalBow6G0847 Salvia bowleyana HOM05D000751 ORTHO05D005618 8.0e-06 53.5 131 32.1
Sopen07g005110 Solanum pennellii HOM05D000751 ORTHO05D005618 8.0e-06 53.5 37 64.9


User provided reference genes

Program Settings