Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 4.8e-118 427.9 233 100.0
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 5.1e-83 311.6 236 78.0
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 2.9e-54 216.1 245 52.7
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 6.4e-54 214.9 245 52.7
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.9e-51 205.7 245 52.2
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.5e-50 203.8 243 51.4
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 2.5e-50 203.0 250 52.8
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.6e-49 200.3 210 58.1
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 2.0e-39 166.8 231 48.5
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 2.6e-39 166.4 213 50.7
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 7.6e-39 164.9 212 53.3
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.2e-38 163.3 224 47.3
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 2.2e-38 163.3 213 51.2
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 6.5e-38 161.8 238 46.2
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.4e-37 160.6 217 50.2
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 3.2e-37 159.5 214 48.6
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 7.2e-37 158.3 215 47.9
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 7.2e-37 158.3 233 47.6
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 2.1e-36 156.8 214 47.7
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 2.7e-36 156.4 220 45.5
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.6e-36 155.6 219 46.6
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 6.1e-36 155.2 223 47.1
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 7.9e-36 154.8 217 50.2
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 6.7e-35 151.8 222 46.8
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 6.7e-35 151.8 232 46.6
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 8.7e-35 151.4 203 46.3
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 2.5e-34 149.8 220 45.5
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.7e-33 147.1 223 43.9
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 2.8e-33 146.4 216 48.1
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.1e-32 144.4 218 45.4
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 2.4e-32 143.3 231 43.3
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 6.9e-32 141.7 218 44.0
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 6.9e-32 141.7 121 64.5
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 6.9e-32 141.7 218 44.5
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 6.9e-32 141.7 241 43.6
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 6.9e-32 141.7 223 45.7
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.5e-31 140.6 219 42.9
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.5e-31 140.6 225 45.3
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 2.0e-31 140.2 224 43.8
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 2.6e-31 139.8 224 43.8
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 7.7e-31 138.3 232 40.9
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.3e-30 137.5 222 46.4
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.7e-30 137.1 231 44.2
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 1.7e-30 137.1 226 42.9
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.7e-30 137.1 223 43.0
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.7e-30 137.1 216 44.0
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.9e-30 136.3 209 43.1
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 6.5e-30 135.2 223 42.6
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 1.9e-29 133.7 218 40.8
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.5e-29 133.3 218 41.7
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 3.2e-29 132.9 223 42.6
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 3.2e-29 132.9 247 42.9
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.2e-29 132.9 219 42.9
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 7.2e-29 131.7 219 43.8
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 9.4e-29 131.3 241 41.5
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.2e-28 131.0 224 42.4
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.2e-28 131.0 203 44.8
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.1e-28 130.2 247 43.3
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.7e-28 129.8 236 40.7
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 3.6e-28 129.4 208 43.3
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.0e-27 127.9 212 42.0
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.4e-27 127.5 213 43.7
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 1.8e-27 127.1 222 42.3
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 5.1e-27 125.6 210 44.8
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 5.1e-27 125.6 211 41.7
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 1.1e-26 124.4 219 41.6
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 3.3e-26 122.9 211 43.1
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 3.3e-26 122.9 211 43.1
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 5.7e-26 122.1 221 42.1
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 7.4e-26 121.7 209 43.1
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 7.4e-26 121.7 211 42.7
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 7.4e-26 121.7 208 40.9
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 9.7e-26 121.3 221 40.3
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.3e-25 120.9 225 41.8
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 3.7e-25 119.4 215 42.8
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 1.4e-24 117.5 232 39.7
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.8e-24 117.1 221 38.9
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 2.0e-23 113.6 216 43.5
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 2.0e-23 113.6 173 47.4
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 3.4e-23 112.8 228 38.6
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.0e-22 111.3 229 38.9
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.0e-22 111.3 221 38.9
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.3e-22 110.9 219 42.0
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.7e-22 110.5 208 41.3
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 6.5e-22 108.6 212 37.7
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 1.1e-21 107.8 217 38.7
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 1.4e-21 107.5 223 38.6
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 4.2e-21 105.9 222 42.3
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 5.5e-21 105.5 213 42.3
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 5.5e-21 105.5 206 39.8
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 7.2e-21 105.1 211 41.7
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.7e-20 103.2 220 35.9
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 3.6e-20 102.8 213 41.8
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 8.0e-20 101.7 206 39.8
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 1.4e-19 100.9 222 37.4
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.8e-19 100.5 224 33.0
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 5.2e-19 99.0 208 36.5
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 6.7e-19 98.6 223 36.8
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 3.3e-18 96.3 216 36.6
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 4.4e-18 95.9 206 38.3
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 9.7e-18 94.7 213 34.3
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.2e-17 93.6 209 35.4
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 2.8e-17 93.2 216 36.1
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 3.7e-17 92.8 219 36.5
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 8.2e-17 91.7 209 36.4
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-16 91.3 104 44.2
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 1.8e-16 90.5 212 36.8
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 4.1e-16 89.4 104 42.3
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 5.3e-16 89.0 208 39.4
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 5.3e-16 89.0 130 40.0
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 1.6e-15 87.4 104 41.3
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 5.9e-15 85.5 104 42.3
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 1.7e-14 84.0 199 34.7
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 3.8e-14 82.8 227 35.7
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 3.8e-14 82.8 220 35.5
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-13 81.3 93 45.2
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 1.9e-13 80.5 130 37.7
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 4.2e-13 79.3 201 33.3
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 5.5e-13 79.0 203 35.0
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 7.2e-13 78.6 208 35.6
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 7.2e-13 78.6 208 35.6
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 7.2e-13 78.6 208 35.6
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.6e-12 77.4 228 34.6
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 1.6e-12 77.4 193 32.1
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 3.6e-12 76.3 214 33.6
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 6.1e-12 75.5 208 32.2
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 6.1e-12 75.5 163 35.6
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 1.0e-11 74.7 211 31.8
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 3.0e-11 73.2 231 33.3
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 3.0e-11 73.2 181 30.4
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 4.0e-11 72.8 211 31.3
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 2.0e-10 70.5 230 30.4
Peaxi162Scf00543g00012 Petunia axillaris HOM05D005081 ORTHO05D005506 2.6e-10 70.1 89 42.7
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 9.7e-10 68.2 208 33.2
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 9.7e-10 68.2 207 33.8
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 1.7e-09 67.4 212 31.6
Peaxi162Scf00451g00717 Petunia axillaris HOM05D005081 ORTHO05D005506 2.8e-09 66.6 91 39.6
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 1.1e-08 64.7 227 31.3
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 1.8e-08 63.9 208 33.7
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 2.0e-07 60.5 222 31.1
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 7.7e-07 58.5 209 31.1
SHI03105 Sapria himalayana HOM05D005081 ORTHO05D005506 2.2e-06 57.0 110 33.6


User provided reference genes

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