Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1230600 Malus domestica HOM05D002672 ORTHO05D002887 3.6e-83 311.6 164 100.0
Prupe.1G056400 Prunus persica HOM05D002672 ORTHO05D002887 1.5e-68 263.1 150 90.7
RcHm_v2.0_Chr4g0396581 Rosa chinensis HOM05D002672 ORTHO05D002887 2.2e-61 239.2 151 84.1
Ciclev10005726m.g Citrus clementina HOM05D002672 ORTHO05D002887 4.0e-58 228.4 151 79.5
arahy.Tifrunner.gnm1.ann1.D41UNS Arachis hypogaea HOM05D002672 ORTHO05D002887 1.2e-57 226.9 163 73.0
ClCG05G003690 Citrullus lanatus HOM05D002672 ORTHO05D002887 7.5e-57 224.2 151 78.8
Sed0004284 Sechium edule HOM05D002672 ORTHO05D002887 1.1e-55 220.3 151 78.1
MELO3C006348.2 Cucumis melo HOM05D002672 ORTHO05D002887 1.4e-55 219.9 151 77.5
TWI09G0639 Tripterygium wilfordii HOM05D002672 ORTHO05D002887 1.4e-55 219.9 151 76.2
CsaV3_3G011410 Cucumis sativus L. HOM05D002672 ORTHO05D002887 2.4e-55 219.2 151 77.5
arahy.Tifrunner.gnm1.ann1.5T6AGB Arachis hypogaea HOM05D002672 ORTHO05D002887 5.4e-55 218.0 151 76.2
Lalb_Chr19g0128641 Lupinus albus HOM05D002672 ORTHO05D002887 7.0e-55 217.6 151 76.2
Manes.03G154900 Manihot esculenta HOM05D002672 ORTHO05D002887 9.1e-55 217.2 151 78.1
Medtr1g046460 Medicago truncatula HOM05D002672 ORTHO05D002887 1.6e-54 216.5 151 76.8
TPR.G23642 Trifolium pratense HOM05D002672 ORTHO05D002887 1.6e-54 216.5 151 77.5
Thecc.04G215100 Theobroma cacao HOM05D002672 ORTHO05D002887 6.5e-53 211.1 149 73.8
Atru.chr4.1817 Acer truncatum HOM05D002672 ORTHO05D002887 1.5e-52 209.9 153 71.2
Sed0026388 Sechium edule HOM05D002672 ORTHO05D002887 1.5e-52 209.9 151 76.2
CiPaw.01G206000 Carya illinoinensis HOM05D002672 ORTHO05D002887 1.9e-52 209.5 151 72.8
Glyma.20G079100 Glycine max HOM05D002672 ORTHO05D002887 2.5e-52 209.1 153 72.5
GSVIVG01029026001 Vitis vinifera HOM05D002672 ORTHO05D002887 5.5e-52 208.0 143 74.8
Phvul.007G238400 Phaseolus vulgaris HOM05D002672 ORTHO05D002887 7.2e-52 207.6 152 72.4
Potri.003G174000 Populus trichocarpa HOM05D002672 ORTHO05D002887 9.5e-52 207.2 151 74.8
Lj6g0003587 Lotus japonicus HOM05D002672 ORTHO05D002887 1.2e-51 206.8 151 72.8
arahy.Tifrunner.gnm1.ann1.8G5UYU Arachis hypogaea HOM05D002672 ORTHO05D002887 1.4e-50 203.4 145 73.1
CiPaw.02G127400 Carya illinoinensis HOM05D002672 ORTHO05D002887 1.8e-50 203.0 150 72.0
Ca_11791_v3 Cicer arietinum L. HOM05D002672 ORTHO05D002887 1.8e-50 203.0 143 74.8
FvH4_4g05430 Fragaria vesca HOM05D002672 ORTHO05D002887 1.8e-50 203.0 142 78.2
Psat6g109760 Pisum sativum HOM05D002672 ORTHO05D002887 3.0e-50 202.2 146 76.0
Nn3g19862 Nelumbo nucifera HOM05D002672 ORTHO05D002887 4.0e-50 201.8 151 70.9
Hma1.2p1_0903F.1_g234970 Hydrangea macrophylla HOM05D002672 ORTHO05D002887 6.8e-50 201.1 151 70.2
Sabra03G0127500 Salix brachista HOM05D002672 ORTHO05D002887 8.9e-50 200.7 148 71.6
Duzib151G1018 Durio zibethinus HOM05D002672 ORTHO05D002887 3.4e-49 198.7 141 73.0
Actinidia39946 Actinidia chinensis HOM05D002672 ORTHO05D002887 4.4e-49 198.4 151 69.5
Duzib268G1141 Durio zibethinus HOM05D002672 ORTHO05D002887 5.7e-49 198.0 151 70.9
Aqoxy2G03816 Aquilegia oxysepala HOM05D002672 ORTHO05D002887 2.2e-48 196.1 151 68.9
arahy.Tifrunner.gnm1.ann1.3B1TBB Arachis hypogaea HOM05D002672 ORTHO05D002887 2.2e-48 196.1 142 72.5
Cfa019497 Carpinus fangiana HOM05D002672 ORTHO05D002887 2.8e-48 195.7 141 70.2
MBI10_g16800_MAGBIO Magnolia biondii HOM05D002672 ORTHO05D002887 2.8e-48 195.7 151 68.2
Glyma.10G127700 Glycine max HOM05D002672 ORTHO05D002887 3.7e-48 195.3 152 69.1
Dinv38293 Davidia involucrata HOM05D002672 ORTHO05D002887 8.3e-48 194.1 142 71.8
TAR633G1836 Trochodendron aralioides HOM05D002672 ORTHO05D002887 8.3e-48 194.1 151 68.2
Cfa019499 Carpinus fangiana HOM05D002672 ORTHO05D002887 4.1e-47 191.8 139 69.8
Nitab4.5_0003136g0010 Nicotiana tabacum HOM05D002672 ORTHO05D002887 9.2e-47 190.7 151 65.6
Lsat_1_v5_gn_0_4681 Lactuca sativa HOM05D002672 ORTHO05D002887 1.6e-46 189.9 150 68.0
Nitab4.5_0000436g0140 Nicotiana tabacum HOM05D002672 ORTHO05D002887 2.7e-46 189.1 151 65.6
PGSC0003DMG400011588 Solanum tuberosum HOM05D002672 ORTHO05D002887 3.5e-46 188.7 151 64.2
Solyc09g091190.3 Solanum lycopersicum HOM05D002672 ORTHO05D002887 4.5e-46 188.3 151 64.2
Sopen09g034160 Solanum pennellii HOM05D002672 ORTHO05D002887 4.5e-46 188.3 151 64.2
CAN.G1588.4 Capsicum annuum HOM05D002672 ORTHO05D002887 1.3e-45 186.8 151 66.2
AUR62022848 Chenopodium quinoa HOM05D002672 ORTHO05D002887 2.3e-45 186.0 145 70.3
AUR62043886 Chenopodium quinoa HOM05D002672 ORTHO05D002887 2.3e-45 186.0 145 70.3
SalBow2G2270 Salvia bowleyana HOM05D002672 ORTHO05D002887 2.3e-45 186.0 150 63.3
Haze_08458 Corylus avellana HOM05D002672 ORTHO05D002887 2.9e-45 185.7 154 63.6
Cc03_g07050 Coffea canephora HOM05D002672 ORTHO05D002887 3.8e-45 185.3 153 62.1
Gohir.D02G035300 Gossypium hirsutum HOM05D002672 ORTHO05D002887 3.8e-45 185.3 148 65.5
Migut.G00607 Erythranthe guttata HOM05D002672 ORTHO05D002887 5.0e-45 184.9 151 64.9
Gohir.A09G053666 Gossypium hirsutum HOM05D002672 ORTHO05D002887 5.0e-45 184.9 150 66.0
Gorai.006G054900 Gossypium raimondii HOM05D002672 ORTHO05D002887 5.0e-45 184.9 149 66.4
Sc19g0005830 Simmondsia chinensis HOM05D002672 ORTHO05D002887 5.0e-45 184.9 149 66.4
CSS0034834 Camellia sinensis var. sinensis HOM05D002672 ORTHO05D002887 6.6e-45 184.5 151 66.2
HanXRQChr11g0342751 Helianthus annuus HOM05D002672 ORTHO05D002887 8.6e-45 184.1 146 67.1
MSTRG.4200 Avicennia marina HOM05D002672 ORTHO05D002887 1.1e-44 183.7 151 65.6
Gorai.005G039000 Gossypium raimondii HOM05D002672 ORTHO05D002887 2.5e-44 182.6 148 64.2
Gohir.A02G027400 Gossypium hirsutum HOM05D002672 ORTHO05D002887 7.3e-44 181.0 148 63.5
CSS0003468 Camellia sinensis var. sinensis HOM05D002672 ORTHO05D002887 2.8e-43 179.1 142 69.0
Cpa.g.sc59.68 Carica papaya HOM05D002672 ORTHO05D002887 3.6e-43 178.7 116 75.9
PGR142G0027 Punica granatum HOM05D002672 ORTHO05D002887 2.3e-42 176.0 150 64.7
VMungo0720G0022 Vigna mungo HOM05D002672 ORTHO05D002887 2.3e-42 176.0 173 59.0
CSS0012732 Camellia sinensis var. sinensis HOM05D002672 ORTHO05D002887 3.0e-42 175.6 142 67.6
SGA_v2.0_scaffold155G37236 Striga asiatica HOM05D002672 ORTHO05D002887 4.0e-42 175.3 143 65.7
THA.LOC104821622 Tarenaya hassleriana HOM05D002672 ORTHO05D002887 4.0e-42 175.3 150 63.3
CANSAT78G1624 Cannabis sativa HOM05D002672 ORTHO05D002887 5.2e-42 174.9 138 65.9
ECA248G1602 Erigeron canadensis HOM05D002672 ORTHO05D002887 6.8e-42 174.5 150 63.3
Hund24853 Selenicereus undatus HOM05D002672 ORTHO05D002887 1.2e-41 173.7 146 65.8
Eucgr.H00109 Eucalyptus grandis HOM05D002672 ORTHO05D002887 2.6e-41 172.6 150 62.7
PSO063G4327 Papaver somniferum HOM05D002672 ORTHO05D002887 5.8e-41 171.4 139 65.5
EL10Ac2g04795 Beta vulgaris HOM05D002672 ORTHO05D002887 1.7e-40 169.9 141 66.0
Thhalv10002653m.g Eutrema salsugineum HOM05D002672 ORTHO05D002887 2.2e-40 169.5 153 60.1
PSO017G6518 Papaver somniferum HOM05D002672 ORTHO05D002887 2.9e-40 169.1 143 63.6
Sp3g21950 Schrenkiella parvula HOM05D002672 ORTHO05D002887 2.9e-40 169.1 151 60.9
CSS0018143 Camellia sinensis var. sinensis HOM05D002672 ORTHO05D002887 4.1e-39 165.2 143 63.6
Carub.0003s2451 Capsella rubella HOM05D002672 ORTHO05D002887 2.0e-38 162.9 126 66.7
Lj6A642T83 Lonicera japonica HOM05D002672 ORTHO05D002887 6.0e-38 161.4 120 69.2
AT3G24010 Arabidopsis thaliana HOM05D002672 ORTHO05D002887 3.0e-37 159.1 126 65.1
SHI00004 Sapria himalayana HOM05D002672 ORTHO05D002887 5.0e-37 158.3 142 64.1
Zm00001eb402910 Zea mays HOM05D002672 ORTHO05D002887 1.1e-36 157.1 164 51.8
BolC7t41762H Brassica oleracea HOM05D002672 ORTHO05D002887 2.5e-36 156.0 151 56.3
BcaB06g26596 Brassica carinata HOM05D002672 ORTHO05D002887 5.6e-36 154.8 151 56.3
CDE02G1586 Ceratophyllum demersum HOM05D002672 ORTHO05D002887 5.6e-36 154.8 148 58.1
AL3G39370 Arabidopsis lyrata HOM05D002672 ORTHO05D002887 9.5e-36 154.1 126 64.3
Os03g0143600 Oryza sativa ssp. japonica HOM05D002672 ORTHO05D002887 1.6e-35 153.3 173 49.7
Peaxi162Scf00047g01527 Petunia axillaris HOM05D002672 ORTHO05D002887 1.1e-34 150.6 117 68.4
Aa31LG8G10850 Aethionema arabicum HOM05D002672 ORTHO05D002887 6.8e-34 147.9 125 61.6
unitig_747.g21674 Utricularia gibba HOM05D002672 ORTHO05D002887 4.4e-33 145.2 125 64.8
Oeu008827.1 Olea europaea HOM05D002672 ORTHO05D002887 7.5e-33 144.4 117 65.8
BcaC06g35630 Brassica carinata HOM05D002672 ORTHO05D002887 2.9e-32 142.5 127 59.1
C07p12760 Brassica napus HOM05D002672 ORTHO05D002887 2.9e-32 142.5 127 59.1
SEGI_10634 Sequoiadendron giganteum HOM05D002672 ORTHO05D002887 3.7e-32 142.1 151 51.7
A07p08220 Brassica napus HOM05D002672 ORTHO05D002887 6.4e-32 141.4 127 59.1
BraA07t28605Z Brassica rapa HOM05D002672 ORTHO05D002887 6.4e-32 141.4 127 59.1
Rhsim02G0050900 Rhododendron simsii HOM05D002672 ORTHO05D002887 1.1e-31 140.6 221 41.2
QL06p022695 Quercus lobata HOM05D002672 ORTHO05D002887 1.2e-30 137.1 97 70.1
vmacro15498 Vaccinium macrocarpon HOM05D002672 ORTHO05D002887 3.5e-30 135.6 142 53.5
HPP92_017467 Vanilla planifolia HOM05D002672 ORTHO05D002887 2.3e-29 132.9 122 56.6
ATR0787G094 Amborella trichopoda HOM05D002672 ORTHO05D002887 4.3e-28 128.6 103 64.1
Rhsim02G0050100 Rhododendron simsii HOM05D002672 ORTHO05D002887 6.2e-27 124.8 183 43.7
Oeu063493.1 Olea europaea HOM05D002672 ORTHO05D002887 8.3e-24 114.4 101 60.4
Pp3c17_6960 Physcomitrium patens HOM05D002672 ORTHO05D002887 1.2e-22 110.5 154 39.6
SMO358G0727 Selaginella moellendorffii HOM05D002672 ORTHO05D002887 1.1e-15 87.4 117 36.8
AagrBONN_evm.TU.Sc2ySwM_369.188 Anthoceros agrestis HOM05D002672 ORTHO05D002887 4.3e-12 75.5 154 35.7
QL06p022689 Quercus lobata HOM05D002672 ORTHO05D002887 4.3e-12 75.5 55 70.9
Ciclev10006965m.g Citrus clementina HOM05D000424 ORTHO05D000355 1.4e-10 70.5 53 62.3
CBR_g34558 Chara braunii HOM05D002672 ORTHO05D002887 1.1e-07 60.8 110 34.5
ATR0697G210 Amborella trichopoda HOM05D002672 ORTHO05D002887 2.4e-07 59.7 115 30.4
Eucgr.A02091 Eucalyptus grandis HOM05D002672 ORTHO05D002887 9.3e-07 57.8 125 28.8
CBR_g3046 Chara braunii HOM05D002672 ORTHO05D002887 1.6e-06 57.0 156 28.8
Lj1A1137T84 Lonicera japonica HOM05D002672 ORTHO05D002887 1.6e-06 57.0 115 30.4
DCAR_016869 Daucus carota HOM05D002672 ORTHO05D002887 3.5e-06 55.8 115 29.6
Actinidia22088 Actinidia chinensis HOM05D002672 ORTHO05D002887 4.6e-06 55.5 116 30.2
ECA285G0009 Erigeron canadensis HOM05D002672 ORTHO05D002887 4.6e-06 55.5 130 27.7
Thhalv10003462m.g Eutrema salsugineum HOM05D002672 ORTHO05D002887 4.6e-06 55.5 123 26.0
Carub.0002s0957 Capsella rubella HOM05D002672 ORTHO05D002887 6.0e-06 55.1 122 26.2
Lsat_1_v5_gn_1_59540 Lactuca sativa HOM05D002672 ORTHO05D002887 6.0e-06 55.1 130 28.5
TAR623G0799 Trochodendron aralioides HOM05D002672 ORTHO05D002887 6.0e-06 55.1 142 28.2
Atru.chr2.1366 Acer truncatum HOM05D002672 ORTHO05D002887 7.8e-06 54.7 135 30.4
Haze_27341 Corylus avellana HOM05D002672 ORTHO05D002887 7.8e-06 54.7 167 28.1
Nn2g15174 Nelumbo nucifera HOM05D002672 ORTHO05D002887 7.8e-06 54.7 116 29.3


User provided reference genes

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