Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD13G1218100 Malus domestica HOM05D003760 ORTHO05D020255 3.0e-32 141.4 78 100.0
Prupe.1G044800 Prunus persica HOM05D003760 ORTHO05D004672 3.5e-20 101.3 73 76.7
QL06p019987 Quercus lobata HOM05D003760 ORTHO05D004672 1.6e-17 92.4 73 71.2
Peaxi162Scf00602g00420 Petunia axillaris HOM05D003760 ORTHO05D004672 3.6e-17 91.3 73 67.1
RcHm_v2.0_Chr4g0394571 Rosa chinensis HOM05D003760 ORTHO05D004672 4.7e-17 90.9 73 72.6
CAN.G220.44 Capsicum annuum HOM05D003760 ORTHO05D004672 3.0e-16 88.2 73 63.0
Sc10g0004370 Simmondsia chinensis HOM05D003760 ORTHO05D004672 3.0e-16 88.2 73 65.8
CSS0026575 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D020255 6.8e-16 87.0 72 69.4
Dinv32036 Davidia involucrata HOM05D003760 ORTHO05D004672 2.0e-15 85.5 73 64.4
Solyc09g090400.4 Solanum lycopersicum HOM05D003760 ORTHO05D004672 2.0e-15 85.5 73 61.6
Sopen09g033310 Solanum pennellii HOM05D003760 ORTHO05D004672 2.0e-15 85.5 73 61.6
DCAR_022349 Daucus carota HOM05D003760 ORTHO05D004672 3.4e-15 84.7 73 58.9
Glyma.09G185000 Glycine max HOM05D003760 ORTHO05D004672 3.4e-15 84.7 73 64.4
VMungo0464G1704 Vigna mungo HOM05D003760 ORTHO05D004672 3.4e-15 84.7 73 63.0
Cpa.g.sc223.12 Carica papaya HOM05D003760 ORTHO05D004672 4.4e-15 84.3 73 65.8
Phvul.004G157800 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 4.4e-15 84.3 73 63.0
arahy.Tifrunner.gnm1.ann1.88C8QI Arachis hypogaea HOM05D003760 ORTHO05D004672 5.7e-15 84.0 73 63.0
arahy.Tifrunner.gnm1.ann1.R8F3HD Arachis hypogaea HOM05D003760 ORTHO05D004672 5.7e-15 84.0 73 63.0
MELO3C005125.2 Cucumis melo HOM05D003760 ORTHO05D004672 5.7e-15 84.0 73 64.4
Nitab4.5_0006936g0020 Nicotiana tabacum HOM05D003760 ORTHO05D004672 5.7e-15 84.0 73 63.0
Psat3g180400 Pisum sativum HOM05D003760 ORTHO05D020255 5.7e-15 84.0 72 65.3
ECA233G5140 Erigeron canadensis HOM05D003760 ORTHO05D004672 7.5e-15 83.6 73 57.5
Potri.001G026100 Populus trichocarpa HOM05D003760 ORTHO05D004672 7.5e-15 83.6 73 64.4
Sabra03G0148000 Salix brachista HOM05D003760 ORTHO05D004672 7.5e-15 83.6 73 64.4
Ah.11g039100 Amaranthus hybridus HOM05D003760 ORTHO05D004672 9.8e-15 83.2 73 61.6
PGSC0003DMG400017207 Solanum tuberosum HOM05D003760 ORTHO05D004672 9.8e-15 83.2 73 60.3
SGA_v2.0_scaffold124G33635 Striga asiatica HOM05D003760 ORTHO05D004672 9.8e-15 83.2 73 61.6
Aqoxy2G00338 Aquilegia oxysepala HOM05D003760 ORTHO05D004672 1.3e-14 82.8 73 58.9
Sabra10G0038400 Salix brachista HOM05D003760 ORTHO05D004672 1.3e-14 82.8 73 64.4
Dinv09260 Davidia involucrata HOM05D003760 ORTHO05D004672 1.7e-14 82.4 73 61.6
Sed0003663 Sechium edule HOM05D003760 ORTHO05D004672 1.7e-14 82.4 73 63.0
CsaV3_5G024790 Cucumis sativus L. HOM05D003760 ORTHO05D004672 2.2e-14 82.0 73 63.0
Lj9C655T7 Lonicera japonica HOM05D003760 ORTHO05D004672 2.2e-14 82.0 73 60.3
GSVIVG01000658001 Vitis vinifera HOM05D003760 ORTHO05D004672 2.2e-14 82.0 73 63.0
Cfa010888 Carpinus fangiana HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 64.4
AUR62043363 Chenopodium quinoa HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 61.6
Ciclev10005415m.g Citrus clementina HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 61.6
Ciclev10006759m.g Citrus clementina HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 64.4
FvH4_4g04150 Fragaria vesca HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 65.8
FAN12G0242 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 65.8
FAN22G1391 Fragaria x ananassa HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 65.8
Potri.003G199301 Populus trichocarpa HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 63.0
Potri.T126106 Populus trichocarpa HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 63.0
TWI63G0088 Tripterygium wilfordii HOM05D003760 ORTHO05D004672 2.9e-14 81.6 73 60.3
CiPaw.13G012300 Carya illinoinensis HOM05D003760 ORTHO05D004672 3.7e-14 81.3 73 64.4
AUR62042161 Chenopodium quinoa HOM05D003760 ORTHO05D004672 3.7e-14 81.3 72 62.5
Nitab4.5_0001425g0120 Nicotiana tabacum HOM05D003760 ORTHO05D004672 3.7e-14 81.3 73 61.6
ClCG01G007720 Citrullus lanatus HOM05D003760 ORTHO05D004672 4.9e-14 80.9 73 61.6
COL.COLO4_15929 Corchorus olitorius HOM05D003760 ORTHO05D004672 4.9e-14 80.9 73 64.4
Glyma.07G090900 Glycine max HOM05D003760 ORTHO05D004672 4.9e-14 80.9 73 60.3
Medtr5g031790 Medicago truncatula HOM05D003760 ORTHO05D004672 4.9e-14 80.9 73 61.6
Aa31LG5G17870 Aethionema arabicum HOM05D003760 ORTHO05D004672 6.3e-14 80.5 73 60.3
MSTRG.20523 Avicennia marina HOM05D003760 ORTHO05D004672 6.3e-14 80.5 73 63.0
AUR62033839 Chenopodium quinoa HOM05D003760 ORTHO05D004672 6.3e-14 80.5 73 60.3
Ca_02468_v3 Cicer arietinum L. HOM05D003760 ORTHO05D004672 6.3e-14 80.5 73 60.3
Lalb_Chr08g0234711 Lupinus albus HOM05D003760 ORTHO05D004672 6.3e-14 80.5 73 61.6
Nitab4.5_0001681g0070 Nicotiana tabacum HOM05D003760 ORTHO05D004672 6.3e-14 80.5 71 60.6
Potri.010G068600 Populus trichocarpa HOM05D003760 ORTHO05D004672 6.3e-14 80.5 73 64.4
QL04p014453 Quercus lobata HOM05D003760 ORTHO05D004672 6.3e-14 80.5 73 63.0
QL04p014818 Quercus lobata HOM05D003760 ORTHO05D004672 6.3e-14 80.5 73 63.0
Sabra01G0019300 Salix brachista HOM05D003760 ORTHO05D004672 6.3e-14 80.5 73 61.6
Atru.chr12.1379 Acer truncatum HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 61.6
Cc02_g29710 Coffea canephora HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 58.9
Migut.B01218 Erythranthe guttata HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 60.3
FvH4_7g02780 Fragaria vesca HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 60.3
FAN06G0531 Fragaria x ananassa HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 60.3
Gohir.D05G283000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 60.3
Gorai.009G296500 Gossypium raimondii HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 60.3
Prupe.2G032300 Prunus persica HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 58.9
Sed0017009 Sechium edule HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 61.6
Hund21541 Selenicereus undatus HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 60.3
vmacro15463 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 8.3e-14 80.1 73 61.6
EL10Ac1g02286 Beta vulgaris HOM05D003760 ORTHO05D004672 1.1e-13 79.7 73 57.5
Eucgr.G03244 Eucalyptus grandis HOM05D003760 ORTHO05D004672 1.1e-13 79.7 73 61.6
FAN01G2043 Fragaria x ananassa HOM05D003760 ORTHO05D004672 1.1e-13 79.7 73 60.3
FAN03G0077 Fragaria x ananassa HOM05D003760 ORTHO05D004672 1.1e-13 79.7 73 60.3
Hma1.2p1_0121F.1_g057510 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 1.1e-13 79.7 73 58.9
Lj3g0013265 Lotus japonicus HOM05D003760 ORTHO05D004672 1.1e-13 79.7 73 61.6
Manes.04G165800 Manihot esculenta HOM05D003760 ORTHO05D004672 1.1e-13 79.7 73 60.3
Nn2g14898 Nelumbo nucifera HOM05D003760 ORTHO05D004672 1.1e-13 79.7 73 60.3
THA.LOC104818980 Tarenaya hassleriana HOM05D003760 ORTHO05D004672 1.1e-13 79.7 73 60.3
Actinidia19460 Actinidia chinensis HOM05D003760 ORTHO05D004672 1.4e-13 79.3 73 58.9
CSS0033000 Camellia sinensis var. sinensis HOM05D003760 ORTHO05D004672 1.4e-13 79.3 73 58.9
Haze_03069 Corylus avellana HOM05D003760 ORTHO05D004672 1.4e-13 79.3 73 63.0
FAN17G2831 Fragaria x ananassa HOM05D003760 ORTHO05D004672 1.4e-13 79.3 73 64.4
Oeu035508.1 Olea europaea HOM05D003760 ORTHO05D020255 1.4e-13 79.3 71 63.4
RcHm_v2.0_Chr1g0322021 Rosa chinensis HOM05D003760 ORTHO05D004672 1.4e-13 79.3 73 60.3
TAR633G0271 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.4e-13 79.3 73 60.3
CiPaw.14G006600 Carya illinoinensis HOM05D003760 ORTHO05D004672 1.8e-13 79.0 73 60.3
FAN03G0469 Fragaria x ananassa HOM05D003760 ORTHO05D020255 1.8e-13 79.0 70 62.9
FAN10G4281 Fragaria x ananassa HOM05D003760 ORTHO05D004672 1.8e-13 79.0 73 60.3
Gohir.A05G281000 Gossypium hirsutum HOM05D003760 ORTHO05D004672 1.8e-13 79.0 73 58.9
Lsat_1_v5_gn_5_36241 Lactuca sativa HOM05D003760 ORTHO05D004672 1.8e-13 79.0 73 53.4
TAR633G2507 Trochodendron aralioides HOM05D003760 ORTHO05D004672 1.8e-13 79.0 73 58.9
BNapus_Darmor_BZH_scaffold_109p00130 Brassica napus HOM05D003760 ORTHO05D004672 2.4e-13 78.6 72 61.1
Cfa006289 Carpinus fangiana HOM05D003760 ORTHO05D004672 2.4e-13 78.6 73 61.6
MBI13_g01615_MAGBIO Magnolia biondii HOM05D003760 ORTHO05D004672 2.4e-13 78.6 73 60.3
Sabra12G0005200 Salix brachista HOM05D003760 ORTHO05D020255 2.4e-13 78.6 73 60.3
HPP92_016595 Vanilla planifolia HOM05D003760 ORTHO05D004672 2.4e-13 78.6 73 60.3
Carub.0003s0684 Capsella rubella HOM05D003760 ORTHO05D004672 3.2e-13 78.2 73 60.3
COL.COLO4_21460 Corchorus olitorius HOM05D003760 ORTHO05D004672 3.2e-13 78.2 73 58.9
Duzib114G0596 Durio zibethinus HOM05D003760 ORTHO05D004672 3.2e-13 78.2 73 58.9
Hma1.2p1_1396F.1_g280580 Hydrangea macrophylla HOM05D003760 ORTHO05D004672 3.2e-13 78.2 73 58.9
Thecc.10G166200 Theobroma cacao HOM05D003760 ORTHO05D004672 3.2e-13 78.2 73 58.9
vmacro22865 Vaccinium macrocarpon HOM05D003760 ORTHO05D004672 3.2e-13 78.2 73 58.9
BcaB04g21296 Brassica carinata HOM05D003760 ORTHO05D004672 4.1e-13 77.8 73 57.5
CAN.G476.4 Capsicum annuum HOM05D003760 ORTHO05D004672 4.1e-13 77.8 70 58.6
Rhsim07G0066200 Rhododendron simsii HOM05D003760 ORTHO05D004672 4.1e-13 77.8 73 58.9
AT3G07300 Arabidopsis thaliana HOM05D003760 ORTHO05D004672 5.4e-13 77.4 73 60.3
Thhalv10007798m.g Eutrema salsugineum HOM05D003760 ORTHO05D004672 5.4e-13 77.4 73 58.9
Lsat_1_v5_gn_8_34020 Lactuca sativa HOM05D003760 ORTHO05D004672 5.4e-13 77.4 73 53.4
PSO339G5967 Papaver somniferum HOM05D003760 ORTHO05D004672 5.4e-13 77.4 73 60.3
PSO384G0478 Papaver somniferum HOM05D003760 ORTHO05D004672 5.4e-13 77.4 73 60.3
Sp3g06250 Schrenkiella parvula HOM05D003760 ORTHO05D004672 5.4e-13 77.4 73 58.9
Solyc11g005600.2 Solanum lycopersicum HOM05D003760 ORTHO05D004672 5.4e-13 77.4 70 58.6
Sopen11g001570 Solanum pennellii HOM05D003760 ORTHO05D004672 5.4e-13 77.4 70 58.6
AL3G18600 Arabidopsis lyrata HOM05D003760 ORTHO05D004672 7.0e-13 77.0 73 58.9
Cc03_g05880 Coffea canephora HOM05D003760 ORTHO05D020255 7.0e-13 77.0 93 55.9
HanXRQChr12g0382881 Helianthus annuus HOM05D003760 ORTHO05D004672 7.0e-13 77.0 70 58.6
TAR636G0376 Trochodendron aralioides HOM05D003760 ORTHO05D004672 7.0e-13 77.0 73 58.9
BolC5t34655H Brassica oleracea HOM05D003760 ORTHO05D004672 9.2e-13 76.6 73 57.5
CARHR081950 Cardamine hirsuta HOM05D003760 ORTHO05D004672 9.2e-13 76.6 73 57.5
C05p60000 Brassica napus HOM05D003760 ORTHO05D004672 1.2e-12 76.3 73 56.2
Rhsim02G0042300 Rhododendron simsii HOM05D003760 ORTHO05D004672 1.2e-12 76.3 73 58.9
A05p40900 Brassica napus HOM05D003760 ORTHO05D004672 1.6e-12 75.9 73 57.5
BraA05t22819Z Brassica rapa HOM05D003760 ORTHO05D004672 1.6e-12 75.9 73 57.5
Ciclev10001295m.g Citrus clementina HOM05D003760 ORTHO05D004672 1.6e-12 75.9 75 58.7
MSTRG.16994 Avicennia marina HOM05D003760 ORTHO05D004672 2.0e-12 75.5 73 58.9
Oeu015685.1 Olea europaea HOM05D003760 ORTHO05D004672 2.0e-12 75.5 73 57.5
Zm00001eb048720 Zea mays HOM05D003760 ORTHO05D004672 2.0e-12 75.5 73 54.8
Phvul.005G029500 Phaseolus vulgaris HOM05D003760 ORTHO05D004672 2.7e-12 75.1 73 60.3
PGR031G0954 Punica granatum HOM05D003760 ORTHO05D004672 2.7e-12 75.1 73 60.3
Zm00001eb223560 Zea mays HOM05D003760 ORTHO05D004672 2.7e-12 75.1 73 54.8
SalBow5G2833 Salvia bowleyana HOM05D003760 ORTHO05D004672 5.9e-12 73.9 73 57.5
unitig_578.g16298 Utricularia gibba HOM05D003760 ORTHO05D004672 7.8e-12 73.6 73 57.5
Glyma.11G154300 Glycine max HOM05D003760 ORTHO05D004672 1.7e-11 72.4 73 53.4
Pp3c21_14090 Physcomitrium patens HOM05D003760 ORTHO05D004672 5.0e-11 70.9 73 54.8
Atru.chr4.1982 Acer truncatum HOM05D003760 ORTHO05D004672 6.6e-11 70.5 73 57.5
CDE07G1968 Ceratophyllum demersum HOM05D003760 ORTHO05D004672 8.6e-11 70.1 73 53.4
Mapoly0105s0017 Marchantia polymorpha HOM05D003760 ORTHO05D004672 8.6e-11 70.1 73 53.4
SEGI_21043 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 1.1e-10 69.7 73 54.8
SEGI_24692 Sequoiadendron giganteum HOM05D003760 ORTHO05D004672 2.5e-10 68.6 73 52.1
ATR0075G007 Amborella trichopoda HOM05D003760 ORTHO05D004672 3.3e-10 68.2 73 53.4
Pp3c10_19890 Physcomitrium patens HOM05D003760 ORTHO05D004672 4.3e-10 67.8 73 53.4
Actinidia39916 Actinidia chinensis HOM05D003760 ORTHO05D004672 1.2e-09 66.2 73 56.2
RcHm_v2.0_Chr1g0322881 Rosa chinensis HOM05D003760 ORTHO05D004672 2.8e-09 65.1 69 58.0
MD07G1036800 Malus domestica HOM05D003760 ORTHO05D004672 6.2e-09 63.9 55 63.6
MD02G1290200 Malus domestica HOM05D003760 ORTHO05D004672 1.4e-08 62.8 55 63.6
AagrBONN_evm.TU.Sc2ySwM_344.807 Anthoceros agrestis HOM05D003760 ORTHO05D004672 1.8e-08 62.4 73 46.6
CDE04G3266 Ceratophyllum demersum HOM05D000656 ORTHO05D000871 1.8e-08 62.4 66 53.0
SMO340G0195 Selaginella moellendorffii HOM05D003760 ORTHO05D004672 1.8e-08 62.4 73 47.9


User provided reference genes

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